Functional resilience of soil microbial communities depends on both soil structure and microbial community composition

The effects of soil structure and microbial community composition on microbial resistance and resilience to stress were found to be interrelated in a series of experiments. The initial ability of Pseudomonas fluorescens to decompose added plant residues immediately after a copper or heat stress (resistance) depended significantly on which of 26 sterile soils it was inoculated into. Subsequent studies showed that both the resistance and subsequent recovery in the ability of P. fluorescens to decompose added plant residues over 28 days after stress (resilience) varied significantly between a sandy and a clay-loam soil. Sterile, sandy and clay-loam soil was then inoculated with a complex microbial community extracted from either of the soils. The resulting microbial community structure depended on soil type rather than the source of inoculum, whilst the resistance and resilience of decomposition was similarly governed by the soil and not the inoculum source. Resilience of the clay-loam soil to heat stress did not depend on the water content of the soil at the time of stress, although the physical condition of the soil when decomposition was measured did affect the outcome. We propose that soil functional resilience is governed by the physico-chemical structure of the soil through its effect on microbial community composition and microbial physiology.     

新生代农民工城市融入过程中的抗逆力研究

对新生代农民工抗逆力的现状进行了分析,并提出了新生代农民工抗逆力培养的内在机制,即：从社会方面建立和完善社会支持网络,提高对新生代农民工的社会接纳能力,为解决新生代农民工生活和就业问题提供保障措施等。     

Biodiversity management in the face of climate change: A review of 22 years of recommendations

Climate change creates new challenges for biodiversity conservation. Species ranges and ecological dynamics are already responding to recent climate shifts, and current reserves will not continue to support all species they were designed to protect. These problems are exacerbated by other global changes. Scholarly articles recommending measures to adapt conservation to climate change have proliferated over the last 22 years. We systematically reviewed this literature to explore what potential solutions it has identified and what consensus and direction it provides to cope with climate change. Several consistent recommendations emerge for action at diverse spatial scales, requiring leadership by diverse actors. Broadly, adaptation requires improved regional institutional coordination, expanded spatial and temporal perspective, incorporation of climate change scenarios into all planning and action, and greater effort to address multiple threats and global change drivers simultaneously in ways that are responsive to and inclusive of human communities. However, in the case of many recommendations the how, by whom, and under what conditions they can be implemented is not specified. We synthesize recommendations with respect to three likely conservation pathways: regional planning; site-scale management; and modification of existing conservation plans. We identify major gaps, including the need for (1) more specific, operational examples of adaptation principles that are consistent with unavoidable uncertainty about the future; (2) a practical adaptation planning process to guide selection and integration of recommendations into existing policies and programs; and (3) greater integration of social science into an endeavor that, although dominated by ecology, increasingly recommends extension beyond reserves and into human-occupied landscapes.     

Potential impacts of water harvesting and ecological sanitation on crop yield, evaporation and river flow regimes in the Thukela River basin, South Africa

In this study we explore the potential impacts of two strategies, namely in situ water harvesting (in situ WH) and fertilisation with stored human urine (Ecosan), to increase the water and nutrient availability in rain-fed smallholder agriculture in South Africa's Thukela River basin (29,000 km²). We use the soil and water assessment tool (SWAT) to simulate potential impacts on smallholder maize yields, river flow regimes, plant transpiration, and soil and canopy evaporation during 1997-2006. Based on the results, the impacts on maize yields are likely to be small with in situ WH (median change: 0%) but significant with Ecosan (median increase: 30%). The primary causes for these effects are high nitrogen stress on crop growth, and low or untimed soil moisture enhancement with in situ WH. However, the impacts vary significantly in time and space, occasionally resulting in yield increases of up to 40% with in situ WH. Soil fertility improvements primarily increase yield magnitudes, whereas soil moisture enhancements reduce spatial yield variability. Ecosan significantly improves the productivity of the evaporative fluxes by increasing transpiration (median: 2.8%, 4.7 mm season⁻¹) and reducing soil and canopy evaporation (median: −1.7%, −4.5 mm season⁻¹). In situ WH does not generally affect the river flow regimes. Occasionally, significant regime changes occur due to enhanced lateral and shallow aquifer return flows. This leads to higher risks of flooding in some areas, but also to enhanced low flows, which help sustain aquatic ecosystems in the basin.     

Landscapes in Time and Space

Landscape ecology has a temporal dimension, and the role of past processes in shaping landscapes is increasingly recognised. To date, the interface between landscape ecology and palaeoecology has proved most productive in understanding the impacts of climate change and in discovering the extent of past human impacts on ecosystems. Further areas of synergy are emerging. This Perspective gives selected examples of five main areas of synergy between palaeoecology and landscape ecology: dynamic landscape mosaics; resilience and thresholds; biocomplexity; adaptive cycles; and in the landscape ecology of invasive spread.     

Effects of Teladorsagia (Ostertagia) circumcincta infection on lambs selected for high fleece weight

The physiological processes leading to the expression of the resilient phenotype, which allow animals to maintain a relatively higher production level during infection, have been investigated in lambs from a closed flock selected for 40 generations for high fleece weight (HFW), but with higher FEC and worm burdens than their unselected control (C) flock run in parallel. After recovery from surgery to implant abomasal cannulae, eight parasite-naïve lambs from each flock were infected intraruminally at 4.5 months-of-age with 50,000 Teladorsagia circumcincta L3. Blood, abomasal fluid and faecal samples were collected daily for measurement of serum gastrin and pepsinogen concentrations, blood eosinophils, abomasal pH and FEC. Four lambs from each flock were euthanased on Day 8 post-infection and the other four on Day 28 post-infection. At necropsy, abomasal contents and tissues were collected for worm counts, abomasal lymph nodes and fundic tissue for cytokine gene expression and fundic tissue for histopathology. Expression of resilience appeared to be age-dependent as there were no significant differences in either FEC or worm burden between lambs from the two flocks, unlike older HFW lambs in a previous study. Abomasal secretion did not differ between flocks. Histopathological changes were typical of parasitism: inflammatory cells, mainly eosinophils and lymphocytes, were numerous in nodular areas and there were fewer TGF-α positive parietal cells, many of which were vacuolated. By Day 28 p.i., globule leucocytes were present. Mucosal thickness was significantly greater on Day 8 than Day 28 p.i. (p = 0.000) and in C than HFW lambs. There were fewer parietal cells on Day 28 than on Day 8 p.i. (p = 0.003) for pooled data. Circulating eosinophil counts increased moderately in both groups, significantly less in the HFW lambs. Fewer tissue and blood eosinophils in the HFW than C group on Day 8 p.i. were consistent with cytokine gene expression patterns, particularly lower IL-5 levels. Worm count decreased by 90% by Day 28 p.i., along with declining tissue eosinophil counts and IL-13 gene expression and increasing IL-10 and IL-4 gene expression. Food intake was depressed less in the HFW lambs, suggesting that maintenance of appetite could be an important aspect of the physiological basis for resilience. Although the resilient phenotype was not apparent at the younger age, lesser effects on food intake, differences in ALN cytokine profiles and lower blood and tissue eosinophil numbers in the HFW lambs may lead to the expression of resilience when older.     

Permanence of resilience and protection efficiency in mountain Norway spruce forest stands: A simulation study

An objective of mountain forest management is to increase the ability of forest stands to protect human activities against natural hazards such as rock-falls and snow avalanches in a sustainable way. The challenge is to find a compromise between efficient instantaneous protection, favoured by dense stands, and continuous renewal, minimizing time periods of low protection efficiency. We used a Norway spruce stand dynamics model to compare the respective advantages of individual tree and gap selection silviculture in this context. We simulated stand dynamics over 800 years with either individual tree or gap thinning every 20 years with several thinning intensities. At each time step, we evaluated stand resilience, protection efficiency against rock-falls, protection efficiency against avalanches, and structural complexity with four indicators based on stand structure. Every scenario produced short time periods with low stand resilience and protection efficiency. Such periods can be tolerated if they are sufficiently rare compared to the local disturbance regime. We characterized the permanence of resilience and protection of a forest stand as its ability to remain within boundary values of the different indicators, without going out of them during continuous time periods longer than fixed maximum durations. Permanence of resilience and permanence of protection decreased with thinning intensity. Efficient protection against rock-falls was obtained with gap thinning of intermediate intensity while protection against avalanches was obtained only for very low thinning intensities. For our ecological context, the best compromise between resilience and protection was obtained with three 10 m radius gaps per hectare every 20 years (9.5% of the area of a stand). This strategy led to uneven-aged stand structures with a high diversity of diameters classes. Our results suggest that small gap silviculture may be a good way to combine forest renewal and protection efficiency in mountain regions.     

Improving resilience against natural gastrointestinal nematode infections in browsing kids during the dry season in tropical Mexico

The objective was to determine the effect of supplementary feeding on the resilience and resistance of Criollo kids against natural gastrointestinal nematode (GIN) infections, when browsing native vegetation during the dry season in tropical Mexico. Thirty-three two-month-old Criollo kids, raised nematode free, were included at weaning in a 20-week trial. The kids were placed into four groups. Two groups of eight kids were offered 100g/day soybean and sorghum meal (26%:74% respectively fresh basis) (treated/supplemented (T-S) and infected/supplemented (I-S)). Two groups remained with no supplement for the duration of the trial (infected/non-supplemented (I-NS) (n=9) and treated/non-supplemented (T-NS) (n=8)). Kids in groups T-S and T-NS were drenched with 0.2mg of moxidectin/kg body weight orally (Cydectin, Fort Dodge) every 28 days. Groups I-S and I-NS were naturally infected with GIN. The animals browsed native vegetation for an average of 7h/day together with a herd of 120 naturally infected adult goats. Cumulative live weight gain (CLWG), packed cell volume (PCV), haemoglobin (Hb), total plasma protein and plasma albumin were recorded every 14 days as measurements of resilience. Resistance parameters (faecal egg counts (FEC) and peripheral eosinophil counts (PEC)) were also measured. Bulk faecal cultures were made for each group every 28 days. Every month a new pair of initially worm-free tracer kids assessed the infectivity of the vegetation browsed by the animals. Tracer kids and faecal cultures showed that kids faced low mixed infections (Haemonchus contortus, Trichostrongylus colubriformis and Oesophagostomum columbianum). Under conditions of scarce vegetation, such as those in the present study, supplemented groups (I-S and T-S) had higher growth rates compared to the non-supplemented groups independently of the control of GIN infection with anthelmintic (AH) treatment (P<0.001). Supplementary feeding did not affect FEC or PEC. In the absence of supplementation, lack of AH treatment may lead to outbreaks of clinical nematodosis. The supplementary feeding was economically feasible.     

基于植物多样性指数对汶川地震灾区崩塌山体的微生境植被自然恢复力评价

本文将地震灾区的崩塌山体划分为碎石坡面、巨石坡面、碎石地、洼地和沟槽地5种微生境类型.在此基础上,基于植物多样性指数,对崩塌山体不同微生境的植被自然恢复力进行了测定.结果表明,不同微生境的植被自然恢复力不同,其恢复力指数大小为：沟槽地＞洼地＞碎石地＞巨石坡面＞碎石坡面.这客观上反应了地震灾区不同生境的植被天然恢复现状,可为灾区有针对性地采取不同恢复措施提供参考.     

Functional resilience of microbial communities from perturbed upland grassland soils to further persistent or transient stresses

The microbial functioning of soils following perturbation was assessed at a temperate upland grassland site, maintained by the Soil Biodiversity and Ecosystem Function Programme at Sourhope Research Station, Scotland. Published results indicated that the soil microbial communities were resilient to these initial perturbations; in this paper we tested whether they were equally resilient to a subsequent perturbation. Soil samples were taken from field plots receiving treatments that represented different forms of perturbation, viz. reseeding, application of sewage-sludge, biocide or nitrogen plus lime, and a non-perturbed control. Functional resilience following further perturbation comprising a transient heat or persistent copper perturbation was assessed over 28 days, by monitoring the short-term decomposition of added plant residues. Bacterial community structure was assessed by DGGE separation of eubacterial 16S rDNA PCR products. PCR-DGGE did not distinguish any significant difference (P>0.05) between the bacterial communities of soils under different treatments, showing differences only between treated soils and the untreated, control soils.Two days after the application of stresses, functional capability differed in soils under different treatments. Soil samples from all the treated plots were less resilient to heat stress than soil from control plots. The initial reduction in decomposition following the addition of copper differed between treatments, but function had not recovered in any of the Cu-amended soils within 28 days. Soil resilience varied according to the type and duration of stress applied, microbial activity, soil characteristics and treatment regimes. The initial resistance of function to stress was not predictive of recovery of function over time.