Comparison of Crinipellis perniciosa isolates from Brazil by ERIC repetitive element sequence-based PCR genomic fingerprinting

Fifty isolates of Crinipellis perniciosa originating from Theobroma cacao , Heteropterys acutifolia and Solanum lycocarpum , from six states within Brazil, were characterized through ERIC-PCR, representing the first application of this method for molecular characterization within C. perniciosa . Phenetic analysis of banding patterns revealed a separation of isolates on the basis of host of origin, with T. cacao -derived isolates showing only a 0·2 similarity level to a cluster comprising the isolates from H. acutifolia and S. lycocarpum . Considerable intraspecific variability was observed within C. perniciosa isolates from T. cacao , with distinct groups observed correlating with geographical origin. Given that a number of isolates from T. cacao from the Amazon region grouped with isolates from Bahia state, this work discusses the possibility that current C. perniciosa populations pathogenic on T. cacao in Bahia originated from the Amazon region, rather than from alternative host plants.     

Feeding ecology of fishes associated with Egeria spp. patches in a tropical reservoir, Brazil

Abstract –  This research characterised feeding ecology of fishes associated with patches of Egeria najas and Egeria densa , two submerged macrophytes, in Rosana Reservoir, Upper Paraná River basin, Brazil. Fishes were sampled using a 1 m² throw trap in patches of different macrophyte biomass and in three diel periods during a wet season. Fish diet (10 species) was primarily composed of autochthonous items (zooplankton, algae and aquatic insect larvae). Almost all intra-specific diet patterns had moderate to low levels of diet similarity, indicating a high variability in diet. Some species showed no diel patterns in feeding activity, whereas others were primarily diurnal or nocturnal. No differences in feeding activity were observed among habitats of medium and high macrophyte biomasses, and species tended to feed on the same items among these habitats. The most abundant fish species demonstrated low inter-specific diet overlap and appear not to compete for food resources. We suggest that Egeria patches are feeding grounds and shelter for small-sized fish species.     

Genetic variability following selection for scrapie resistance in six autochthonous sheep breeds in the province of Bolzano (northern Italy)

Scrapie is an ovine transmissible spongiform encephalopathy, and its susceptibility is associated with polymorphisms in the prion protein gene (PRNP). Genetic selection is currently the most effective mean for eradication of the susceptible VRQ allele in favour of resistant ARR allele. Maintenance of genetic diversity should be one of the major objectives in breeding programmes, especially in endangered breeds, and genetic information are an excellent alternative to pedigree data where these information are missing. The aim of our study was to determine changes of genetic variability in six native sheep breeds from autonomous province of Bolzano, northern Italy, following simulation of scrapie selection scenarios. A total of 684 rams were investigated for PRNP polymorphisms and for 10 microsatellite loci to estimate genetic variability. Across all loci, a total of 163 alleles were detected with a mean of 10.4 alleles per locus. Average observed (Ho) and unbiased expected (uHe) heterozygosity overall loci were 0.74 and 0.78, respectively, showing a statistically significant deviation from Hardy–Weinberg equilibrium (HWE) in all breeds. This heterozygosity deficit was confirmed by a positive fixation index (Fis), determining a moderate inbreeding in each breed. Simulating a soft selection, where only rams having at least a VRQ allele should be excluded from reproduction, Ho, uHe and Fis values remained almost unchanged, indicating that genetic variability should not be affected by the removal of these individuals. With a mild selection scenario, considering only rams with at least one ARR allele, we observed a decrease in the mean alleles per breed (8.9) and the maintenance of heterozygosity deficiency, except for two breeds, where it was any longer significant. These results showed that selection strategies allowing use of heterozygous as well homozygous ARR rams might be the right compromise to improve resistance to scrapie and to do not dramatically affect genetic variability of these breeds.     

Effects of size and morphology on swimming performance in juvenile brown trout (Salmo trutta L.)

Abstract –  Our study assesses swimming capacity (speed and stamina) and possible morphometric determinants of locomotor performance of juvenile brown trout ( Salmo trutta L.). We addressed these issues at the individual level to have an approach of the functional significance of intraspecific variation in morphological design. Both swimming speed and endurance time showed significant positive relationships with fish length. Size-corrected values of speed and endurance time were negatively correlated suggesting a phenotypic trade-off between burst and prolonged swimming. Size was also highly correlated with all the morphological variables measured. Therefore, we used the residuals of the regressions of those variables on fish length to remove the effect of body size. A principal components analysis (PCA) summarised the 12 morphological variables into two factors, which accounted for 44.3% of the variance. PC1 combined several measures of body depth and width, whereas PC2 represented mainly postanal length relative to abdomen length. Relationships between the scores of the two factors and size-corrected values of maximum swimming speed and endurance time were weak. PC2 showed a significant positive relationship with endurance time; that is, individuals with longer caudal regions were able to swim against water flow for longer periods of time. Stoutness (PC1) showed a marginally significant negative correlation with endurance time. The lack of stronger relationships could be because of the low morphometric variability among the test individuals, all proceeding from the same population, reared in a common environment, and measured at the same ontogenetic stage.     

The Effect of Training on Yili Horse 1 600 m Test Results and Heart Rate Variability

【Objective】 The objective of this study was to analyze the effect of different training stages on the performance and heart rate variability(HRV) of Yili horses and to provide data for reference in the conditioning training of 1 600 m distance Yili horses.【Method】 Eight 3-year-old Yili horses (stallions) were selected as test subjects.A 3-month speed specific performance training program was conducted, and a speed test race was organized in the last week of each month of training, and HRV was collected before, immediately after, 0.5 h after, and 1 h after 1 600 m test race.Among them, the time-domain indexes included the mean of all R-R intervals (Mean RR), the standard deviation of all R-R intervals (SDNN), the mean heart rate (Mean HR), the root mean square of the difference between adjacent R-R intervals (RMSSD), the number of adjacent R-R intervals with a difference greater than 50 ms (NN50), and the percentage of adjacent R-R intervals with a difference greater than 50 ms to the total number of heartbeats (pNN50).Frequency domain metrics included very low frequency (VLF), low frequency power (LF), high frequency power (HF) and nonlinear metrics:standard deviation (Y) of all R-R-spacing (SD1), standard deviation (X) of all R-R-spacing (SD2).Consequently, the variability of HRV indexes in horses at different training stages was analyzed.【Result】 The race time in the post training period in 1 600 m speed test race of Yili horses was significantly lower than that in the early training period (P<0.05), and Mean RR, NN50 and pNN50 in the middle and post training periods were significantly lower than that in the early training period (P<0.05).Mean HR in the beginning of training was significantly lower than that in post training (P<0.05).VLF and LF in the end of training were significantly lower than that in the beginning of training (P<0.05).【Conclusion】 Under the conditions of this test, the HRV indexes of 1 600 m test race of Yili horses in different conditioning training stages were analyzed.The outcomes demonstrated that the types of neural activity in Yili horses at the beginning, middle and end of training presented some differences, showing changes of increased sympathetic excitability and decreased parasympathetic excitability, and the horses' athletic performance improved.Therefore, HRV could be considered as an effective tool to evaluate the training load and intensity of Yili horses during training.     

The scope for reconciling public good and private forestry in the United Kingdom

The nature of private forestry in the UK as an economic activity is changing, with increasing ‘public good’ demands being placed on forest owners, with or without compensation from government. Although the motives for owning woodland are weakly researched, it is evident that amenity and recreational interests rather than formal productive economic activity are a major force in influencing woodland purchase and may well be a dominant force in woodland management over many parts of the UK. Recent research suggests a need for recognition of the high value of the public goods and, in particular, recognition of their high levels of spatial variability, whilst recognising that the public good — private good dualism is an oversimplification of the actual situation. New policy instruments are currently being implemented in various parts of the UK by devolved governments, and their capacity to both remediate market failure and address the needs of forest owners is considered. Their voluntary character and the preferences of forest owners may seriously constrain the optimal delivery of public goods. Further, existing policy instruments may be seen as insufficiently geographically targeted to areas where the greatest social benefits could be anticipated from policy-induced improvements in public good values.     

A comparative study of pigeons and chickens experimentally infected with PPMV-1 to determine antigenic relationships between PPMV-1 and NDV strains

To compare the pathogenicity of PPMV-1 in pigeons and chickens, both species of birds were experimentally infected with strain pi/CH/LHLJ/110822, which was isolated from a pigeon in China. The clinical signs, gross lesions, and histopathological changes were observed in pigeons inoculated with pi/CH/LHLJ/110822. The morbidity and mortality rates were 80% and 70% in pigeons, respectively, whereas there were no clinical signs or gross lesions in chickens inoculated with the same strain. The viral loads in tissue samples were detected by real-time RT-PCR, indicating that six tissue samples (i.e., kidney, lung, brain, trachea, Harderian glands, and proventriculus) had detectable viral RNA in all dead pigeons, and significant differences in viral loads between pigeons and chickens were observed in several tissue samples (i.e., Harderian glands, proventriculus, duodenum, pancreas, small intestine, and large intestine) on 3 days post-inoculation (dpi) and in brain tissue on 7 dpi. In general, viral loads in pigeons were higher than those in chickens, whereas antibody titers in pigeons were lower than those in chickens. These results showed differences in pathogenicity, efficiency of viral RNA replication, and humoral immunity, indicating different susceptibilities between the host species. Additionally, the cross hemagglutination inhibition assay and cross virus neutralization tests demonstrated that pi/CH/LHLJ/110822 antigenicity was different from those of strains La Sota and F48E9.     

Simple and effective method for monitoring ambulatory electrocardiogram in toads

AIM：To screen out a suitable lead for monitoring the ambulatory electrocardiogram (ECG) in unrestrained toad, and to investigate its practicability. METHODS：After subcutaneously implanting the electrodes in toads under anaesthesia, the ambulatory ECG of 5 leads were monitored with BL-420S data acquisition and analysis system, and the leads which could well express the waveform in ECG were screened out. The recovery process of the toads from the artificial hibernation within 6 h, the day-to-day stability of the heart rate (HR) and the heart rate variability (HRV) in 5 successive days of hibernation, and the HR and HRV after freeze-thawing process were monitored to determine its practicability. RESULTS：Two out of 5 leads showed better ECG waveforms. Compared with 6 h post hibernation, lowered HR at 0 h and 1 h was observed, and the standard deviation of normal R-R intervals (SDNN) was significantly increased (P<0.05 or P<0.01), but the HR and SDNN from 2 to 5 h showed no significant difference, suggesting that the cardiac function reached the steady state after 2 h recovery. The HR at 2 h and 4 h on day 4 and day 5 decreased significantly compared with that on day 1 (P<0.05 or P<0.01), followed with a significant increase in SDNN (P<0.05 or P<0.01), suggesting that the ECG remained stable within 3 d. The HR increased, while SDNN decreased significantly at 1 h and 12 h post-thawing compared with that at pre-freeze (P<0.05), indicating the damaged cardiac function after freeze-thawing process. CONCLUSION：The method of subcutaneously implanting electrodes is suitable for effectively monitoring the ambulatory ECG in toads.     

The effects of climate variability on zooplankton and basking shark (Cetorhinus maximus) relative abundance off southwest Britain

At small spatial scales basking sharks (Cetorhinus maximus) forage selectively on zooplankton along thermal fronts, but the factors influencing broader scale patterns in their abundance and distribution remain largely unknown. Using long‐term sightings data collected off southwest Britain between 1988 and 2001, we show that the number of basking sharks recorded was highly correlated with abiotic factors, principally sea surface temperature (SST) and the lagged effect of SST in the previous month, but only very weakly to zooplankton density. This suggests that the changes in number of basking sharks recorded over large spatio‐temporal scales are more closely related to the availability of climate‐driven thermal resources than prey availability, whereas the converse is supported by previous studies at local scales. Taken together, these results imply scale‐dependent behavioural responses in basking sharks, with small‐scale foraging movements linked by broad scale responses to temperature variation.     

Genetic improvement of farmed tilapias: Biochemical characterization of strain differences in Nile tilapia

Four African wild strains (Egypt, Ghana, Senegal and Kenya) and four established Asian farmed strains of Nile tilapia, Oreochromis niloticus (popularly known in the Philippines as Taiwan, Thailand, Singapore and Israel) were analysed electrophoretically at 30 protein loci to estimate genetic differences among the strains. All strains shared alleles at 14 monomorphic and 16 variable loci. Among the African strains, characteristic allele frequency differences were observed at AAT-1 ^* 46 for Ghana and Senegal, ADH ^* 83 for Kenya, ADH ^* 120 for Senegal, G3PDH-2 ^* 300 for Egypt, IDDH ^* 67 for Senegal, sMDH-1 ^* 120 for Kenya and SOD ^* 150 for Senegal. Genetic distance values among the strains revealed a clustering of the farmed strains with Egypt and Ghana O. niloticus, a slight separation of the Senegal strain and a larger separation of the Kenya strain. This profile may reflect the origins of the few founder populations of this species previously introduced to Asia. It also confirms the wider genetic divergence of the Kenya strain (O. niloticus vulcani) from the others studied here, which are all O. n. niloticus. Observed heterozygosities of the strains ranged from 0.026 to 0.071, with the African wild strains the lower values (mean Ho = 0.036) and the farmed strains the higher ones (mean Ho = 0.056). The implications of these results to the ongoing tilapia genetic improvement programme in the Philippines are discussed.