Distribution and abundance of soil fungi in Antarctica at sites on the Peninsula, Ross Sea Region and McMurdo Dry Valleys

Fungal abundance and diversity were studied from 245 soil samples collected in 18 distinct ice-free locations in Antarctica including areas in the McMurdo Dry Valleys, Ross Sea Region, and the Antarctic Peninsula. Cultivable fungal abundance in soil was found to be most positively correlated with percent carbon and nitrogen based on a Spearman’s rank correlation test of six soil parameters. Soil moisture and C/N ratio were also positively correlated with fungal abundance while pH and conductivity were negatively correlated. These results suggest that nutrient limitations in these highly oligotrophic environments are a primary factor in determining the distribution and abundance of indigenous fungi. Other effects of the extreme Antarctic environment likely affect fungi indirectly by limiting the distribution and abundance of plant-derived sources of carbon.     

Drought meets acid: three new genera in a dothidealean clade of extremotolerant fungi

Fungal strains isolated from rocks and lichens collected in the Antarctic ice-free area of the Victoria Land, one of the coldest and driest habitats on earth, were found in two phylogenetically isolated positions within the subclass Dothideomycetidae. They are here reported as new genera and species, Recurvomyces mirabilis gen. nov., sp. nov. and Elasticomyces elasticus gen. nov., sp. nov. The nearest neighbours within the clades were other rock-inhabiting fungi from dry environments, either cold or hot. Plant-associated Mycosphaerella-like species, known as invaders of leathery leaves in semi-arid climates, are also phylogenetically related with the new taxa. The clusters are also related to the halophilic species Hortaea werneckii, as well as to acidophilic fungi. One of the latter, able to grow at pH 0, is Scytalidium acidophilum, which is ascribed here to the newly validated genus Acidomyces. The ecological implications of this finding are discussed.Taxonomic novelties: Recurvomyces Selbmann & de Hoog, gen. nov.; Recurvomyces mirabilis Selbmann & de Hoog, sp. nov.; Elasticomyces Zucconi & Selbmann, gen. nov.; Elasticomyces elasticus Zucconi & Selbmann, sp. nov.; Acidomyces Selbmann, de Hoog & De Leo, gen. nov.; Acidomyces acidophilus (Sigler & J.W. Carmich.) Selbmann, de Hoog & De Leo, comb. nov.     

Bacterial diversity and bioprospecting for cold-active hydrolytic enzymes from culturable bacteria associated with sediment from Nella Fjord, Eastern Antarctica

The diversity and cold-active hydrolytic enzymes of culturable bacteria associated with sandy sediment from Nella Fjord, Eastern Antarctica (69°22'6″ S, 76°21'45″ E) was investigated. A total of 33 aerobic heterotrophic bacterial strains were isolated at 4 °C. These bacterial isolates could be sorted into 18 phylotypes based on the 16S rRNA gene sequence belonging to four phyla, namely Alphaproteobacteria, Gammaproteobacteria, Bacteroidetes and Actinobacteria. Only seven isolates were psychrophilic, 15 isolates were moderately psychrophilic, and 11 isolates were psychrotolerant. More than 72% of the isolates required sodium chloride to grow. Esterase, β-glucosidase and proteases activities at 4 °C were detected in more than 45% of the strains while approximately 21%, 15% and 12% of the strains possessed lipase, amylase and chitinase, respectively. These results indicate that a relatively high culturable bacterial diversity is present within marine sediment of Nella Fjord and it could serve as an ideal candidate region for bioprospecting.     

南极半岛海洋气候区的土壤I.风化作用

南极海洋性气候区是南极风化与成土作用相对较强的地区。本在对本区气候特点进行分析的基础上，明确了冻胀风化是本区最主要的物理风化形式，强烈的现代地貌过程对本区风化与成土过程具有显影响。阐述了本区内化学风化的主要过程、机制与产物，同时指出生物因素在本区的岩石风化与原始土壤形成过程具有重要意义。     

Occurrence of nematodes, tardigrades and rotifers on ice-free areas in East Antarctica

Nematodes, rotifers and tardigrades were collected on three nunataks (mountain peaks penetrating the ice sheet) in Vestfjella, on six nunataks in Heimefrontfjella and on the Schirmacher Oasis in East Antarctica in the austral summers of 1996/97 and 2001/02. Most samples were taken on the nunatak Basen in Vestfjella where the Swedish station Wasa is located. The microfauna was patchily distributed and the highest densities of animals were found on sites with visible vegetation of mosses, lichens or algae. Thirty-four taxa of nematodes and tardigrades were found. Only seven of these occurred regularly in apparently actively reproducing populations. Other occasional records of nematodes had very few specimens. The highest number of species was found on the nunatak Basen. Rotifers, found in 66% of the samples, were the most frequent animal group. Nematodes occurred in 37% of the samples and tardigrades in 42%. The most frequent nematodes were Plectus and Panagrolaimus, occurring in 26% and 5% of the samples, respectively. Macrobiotus, Hebesuncus and Acutuncus were the most frequent and abundant tardigrades. The pattern of animal distribution can be related to both habitat characteristics and to the geographic position of the nunatak. The communities are little organised and the distribution of the fauna has similarities with an early phase of colonisation.     

Community level physiological profile response to plant residue additions in Antarctic soils

Changes in microbial community-level physiological profiles (CLPP) were investigated during decomposition of plant materials in maritime Antarctic soils from Alexander Island and Signy Island. For each soil, a series of microcosms were established and half of them amended with Deschampsia antarctica residues and the other half left unamended (controls). Microcosms were destructively sampled at regular intervals and a soil suspension from each microcosm was used to inoculate BIOLOG EcoPlates. The results showed differences between samples due to the treatment (amendment) but no systematic changes due to incubation period. Microbial response in terms of the overall BIOLOG activity in FB soils was greater than in JC and increased in the former during plant decomposition whilst the overall activity of the JC soils remained relatively unchanged. The differences in the microbial community response to plant amendment between FB and JC may be related to the C:N ratio of these soils and to differences in the way in which the different microbial communities respond to sporadic resource inputs.     

Hidden Diversity in an Antarctic Algal Forest: Metabolomic Profiling Linked to Patterns of Genetic Diversification in the Antarctic Red Alga Plocamium sp.

The common Antarctic red alga Plocamium sp. is rich in halogenated monoterpenes with known anticancer and antimicrobial properties and extracts of Plocamium sp. have strong ecological activity in deterring feeding by sympatric herbivores. Plocamium sp. collected near Anvers Island, Antarctica showed a high degree of secondary metabolite diversity between separate individuals. GC/MS results revealed 15 different combinations of metabolites (chemogroups) across individuals, which were apparent at 50% or greater Bray–Curtis similarity and also clearly distinguishable by eye when comparing chromatographic profiles of the secondary metabolomes. Sequencing of the mitochondrial cox1 gene revealed six distinct haplotypes, of which the most common two had been previously reported (now referred to as Haplotypes 1 and 2). With the exception of one individual, three of the chemogroups were only produced by individuals in Haplotype 1. All the other 12 chemogroups were produced by individuals in Haplotype 2, with five of these chemogroups also present in one of the four new, less common haplotypes that only differed from Haplotype 2 by one base pair. The functional relevance of this metabolomic and genetic diversity is unknown, but they could have important ecological and evolutionary ramifications, thus potentially providing a foundation for differential selection.     

Food for thought: Risks of non-native species transfer to the Antarctic region with fresh produce

To understand fully the risk of biological invasions, it is necessary to quantify propagule pressure along all introduction pathways. In the Antarctic region, importation of fresh produce is a potentially high risk, but as yet unquantified pathway. To address this knowledge gap, >11,250 fruit and vegetables sent to nine research stations in Antarctica and the sub-Antarctic islands, were examined for associated soil, invertebrates and microbial decomposition. Fifty-one food types were sourced from c. 130 locations dispersed across all six of the Earth’s inhabited continents. On average, 12% of food items had soil on their surface, 28% showed microbial infection resulting in rot and more than 56 invertebrates were recorded, mainly from leafy produce. Approximately 30% of identified fungi sampled from infected foods were not recorded previously from within the Antarctic region, although this may reflect limited knowledge of Antarctic fungal diversity. The number of non-native flying invertebrates caught within the Rothera Research Station food storage area was linked closely with the level of fresh food resupply by ship and aircraft. We conclude by presenting practical biosecurity measures to reduce the risk of non-native species introductions to Antarctica associated with fresh foods.     

A Metataxonomic Approach Reveals Diversified Bacterial Communities in Antarctic Sponges

Marine sponges commonly host a repertoire of bacterial-associated organisms, which significantly contribute to their health and survival by producing several anti-predatory molecules. Many of these compounds are produced by sponge-associated bacteria and represent an incredible source of novel bioactive metabolites with biotechnological relevance. Although most investigations are focused on tropical and temperate species, to date, few studies have described the composition of microbiota hosted by Antarctic sponges and the secondary metabolites that they produce. The investigation was conducted on four sponges collected from two different sites in the framework of the XXXIV Italian National Antarctic Research Program (PNRA) in November–December 2018. Collected species were characterized as Mycale (Oxymycale) acerata, Haliclona (Rhizoniera) dancoi, Hemigellius pilosus and Microxina sarai by morphological analysis of spicules and amplification of four molecular markers. Metataxonomic analysis of these four Antarctic sponges revealed a considerable abundance of Amplicon Sequence Variants (ASVs) belonging to the phyla Proteobacteria, Bacteroidetes, Actinobacteria and Verrucomicrobia. In particular, M. (Oxymycale) acerata, displayed several genera of great interest, such as Endozoicomonas, Rubritalea, Ulvibacter, Fulvivirga and Colwellia. On the other hand, the sponges H. pilosus and H. (Rhizoniera) dancoi hosted bacteria belonging to the genera Pseudhongella, Roseobacter and Bdellovibrio, whereas M. sarai was the sole species showing some strains affiliated to the genus Polaribacter. Considering that most of the bacteria identified in the present study are known to produce valuable secondary metabolites, the four Antarctic sponges could be proposed as potential tools for the discovery of novel pharmacologically active compounds.