Identification and Molecular Characteristics Analysis of Porcine Epidemic Diarrhea Virus Variants

To ascertain a diarrhea case in a pig farm in Shandong province,the pathological changes of dead piglets were observed and nested RT-PCR test was carried out on 7 diarrhea samples for porcine epidemic diarrhea virus (PEDV).Pathological examination revealed that intestine was detected as enlargement,hyperemia and edema.After histological examination,the typical microscopic lesions of intestine were disappearance of epithelial cells,villus shrinkage and shortening.The result of nested RT-PCR showed that all of the 7 samples could amplify a specific target band of PEDV.Molecular characteristics of two field strains showed that they had an amino acid homology of 92.3% to 92.4% with vaccine CV777 and 96.6% to 98.6% with other previous field strains which sequences were downloaded from GenBank.Phylogenetic tree analysis further revealed that all of PEDV strains could be mainly divided into two clusters of G1 and G2. G2 consisted of the field strains of our study and other field strains from USA,China and so on,which had the same sequence characteristics of two insertions and one deletion,while G1 consisted of all vaccines of CV777 and several older field strains from China and Korea.These results indicated that our field strains were the dominant strains in recent epidemic diarrhea occurrence.Moreover,its molecular characteristics might be a characterization of differentiating the field and vaccine strains.     

红树植物—白骨壤黑斑病病原菌的分离与鉴定

<正>红树林是生长在热带、亚热带海岸潮间带,可海陆两栖的特殊木本植物群落,具有防风御浪、净化环境、维护沿海湿地生物多样性等生态功能,为珍稀植物群落。有报道认为红树植物生长在海边又富含抗菌等活性物质,不利于病害发生,但近年来本实验室在广东雷州半岛等地红树林发现有多种病害发生~([1,2]),仅白骨壤(Avicennia marina)上就发现有黑茎病、灰斑病等病害。2014年我们在该区白骨壤小苗     

C语言在线评价与测试系统的开发与探讨

随着网络教育的发展,接受网络教育和考试认证的人越来越多,在线考试正在得以迅速发展.本文简要介绍在线系统工作原理和系统配置.     

基于S基因序列分析新型猪流行性腹泻病毒的遗传演化

最近，笔者实验室在青藏高原地区发现两种新亚型藏猪源猪流行性腹泻病毒（PEDV），为进一步调查新型PEDV是否在四川腹泻猪群中存在或流行，对实验室2018-2019年保存的116份猪腹泻粪便或肠组织样本进行PEDV的检测及其纤突蛋白基因（spike）分子特征研究。结果表明：腹泻样本的PEDV检出率为42.2%（49/116，95% CI=33.1%~51.8%），并获得了13条完整的S基因序列，全长为4 149~4 170 bp，序列相似性为94.2%~99.9%，其中SWUN-H3-CH-SCYA-2019的S基因与藏猪源新G1亚群PEDV的序列相似性高达97.0%~98.6%。遗传演化研究结果表明13株PEDV S基因划分为G1和G2大群，其中SWUN-H3-CH-SCYA-2019位于藏猪源新G1亚群；SWUN-19-CH-SCZY-2018、SWUN-4-CH-SCXC-2018、SWUN-1-CH-SCNJ-2019和SWUN-3CH-CH-SCZG-2019位于G2亚群中一个独立的分支，且与藏猪源新G2亚群毒株有着较近的亲缘关系。为了进一步研究13株PEDV的演化过程，以贝叶斯进化分析软件包（BEAST）进行分歧时间估算，结果表明SWUN-H3-CH-SCYA-2019的分歧时间约为2012.3年，早于藏猪源新G1亚群其余毒株的最早分歧时间（2015.7年）；SWUN-4-CH-SCXC-2018、SWUN-19-CH-SCZY-2018和SWUN-3CH-CH-SCZG-2019的分歧时间约为2014.2年，早于G2亚群的藏猪源毒株2014.7年，所有藏猪源PEDV的分歧时间均晚于四川毒株。本研究在四川地区首次发现了藏猪源PEDV，并且从毒株的分歧时间推断青藏高原的藏猪源PEDV来源于四川，为新型PEDV分子遗传进化的监测提供了依据。     

基于B/S的农业气象自动化观测系统国家级平台设计与应用

农业气象自动化观测系统国家级平台是依托中国气象局组织的农业气象自动化观测试点工作而设计开发,平台的搭建采用B/S架构实现多级用户、跨平台登录,采用XML及JSON等数据传输格式实现国家级、省级、台站级用户信息交互,实现农业气象观测XML数据传输状态的监控、台站端设备状态的评估以及数据内容的实时查询。     

云南芥菜型油菜资源品质及苗期耐旱性评价

为研究芥菜型油菜的耐旱性，对150份云南芥菜型油菜地方品种的品质及苗期不同干旱程度下植株地上 及地下部进行研究。结果表明，参试芥菜型油菜耐旱性总体表现较好，品质变异丰富，其中油酸、芥酸变异系数大 于1，依据品质性状参试品种大致聚为三类；中度及重度干旱均能显著影响油菜地上部及根系的生长，其中对根系 影响更大；各品质性状与耐旱性相关分析表明，中度干旱条件下，耐旱性与含油量及芥酸、花生烯酸2种极长链脂肪 酸呈显著正相关，与5种长链脂肪酸硬脂酸、棕榈酸、油酸、亚油酸、亚麻酸为显著负相关，而重度干旱条件下均不相 关，同一品种在不同程度干旱下其耐旱性有差别；含油量与极长链脂肪酸呈显著正相关，与长链脂肪酸及蛋白含量 呈显著负相关，极长链脂肪酸与长链脂肪酸间呈极显著负相关。共筛出8个综合耐旱性强的材料。     

Development and Application of Cotton InDel Markers Based on High Throughput Sequencing

[Objective] Dimorphic InDel markers can be used for cotton variety identification and purity detection, to improve the accuracy and efficiency of cotton seed testing, and to play a role in molecular breeding of cotton. [Method] Based on the whole genome sequencing of 121 cotton varieties from different sources, the InDel markers with high polymorphism were developed according to polymorphism information content(PIC) and were applied in the genetic distance analysis and cluster analysis by using 66 cotton varieties in China. [Result] Totally 10 967 InDel were identified based on the next generation sequencing data of 121 cotton varieties. Among the 85 pairs of InDel primers synthesized, 64 were selected including 35 from At group and 29 from Dt group. The minimum average allelic frequency(MAF) of At and Dt chromosomes were 0.45 and 0.32, respectively, while the PIC were 0.49 and 0.40, respectively. The genetic distances of the 66 cotton varieties ranged from 0.04 to 0.65 centimorgan (cM), with an average of 0.39 cM. The two varieties with the largest genetic distance were Simian 3 and CCRI 36, and the two varieties with the smallest genetic distance were Xumian 18 and Xuza 3. [Conclusion] The 64 cotton dimorphic InDel markers can effectively reveal the relationships among varieties based on the genetic distance, and distinguish cotton varieties from different sources, which has certain theoretical significance and application value.     

微生物菌群培养组学在动物医学中的应用

实验室条件下可培养的微生物约占自然界中微生物总数的1%，这限制了人们对99%未知微生物的认识和利用，而研究表明，那些“不可培养的微生物”是可以被开发和利用的，未能被纯培养的微生物才是未知微生物的主体。微生物培养组学探索利用多种培养条件和长时间的培养，结合基质辅助激光解吸电离飞行时间质谱法（MALDI-TOF-MS）和16S核糖体RNA（rRNA）测序可以大规模鉴定各种微生物，同时利用全基因组测序和宏基因组测序手段对未知微生物进行深入分析。本文综述了国内外近年来微生物菌群培养组学在反刍动物胃肠道、禽类盲肠及家畜鼻腔微生物菌群研究中的最新进展，探讨将动物体内菌群培养组学方法应用于动物疾病防治领域的可行性。作为一个新兴的研究方法，尽管该培养组学还存在一些不够成熟的方面，但它的发展前景十分广阔，微生物菌群培养组学方法和其他研究方法的互补已经逐渐成为发展兽医微生物学新的突破口。     

海南兰科植物新记录

本文报道了海南兰科植物3新记录种,分别是全唇叉柱兰[Cheirostylis takeoi (Hayata) Schltr]、兰屿芋兰（Nervilia lanyuensis S. S. Ying）和台湾隐柱兰（Cryptostylis taiwaniana Masam）。凭证标本存于上海辰山植物园标本馆（CSH）。     

基于快速幂法子空间跟踪的低频振荡辨识方法

基于中国农村1986~2010年的时间序列数据，采用状态空间模型和中介效应分析方法检验并测算了农村金融发展对农村贫困的影响效应及其成分。研究结果表明：农村金融发展有效促进了农村贫困缓减，并且在促进农村贫困缓减的过程中中介效应与直接效应并存。