荧光定量PCR中至少应提供的信息(MIQE)

荧光定量PCR也称qPCR(quantitative PCR),是通过荧光染料或荧光标记的特异性的探针,利用荧光信号积累实时监测整个PCR进程,然后结合相应的软件对待测样品模板的起始浓度进行定量。目前,人们对实时定量PCR的操作规范和试验结果分析缺乏共识,许多发表的文章中缺乏足够的试验细     

鱼肠道弧菌免疫检测方法的研究

采用灭活的鱼肠道弧菌作为抗原,制备兔抗血清,建立了鱼肠道弧菌的间接荧光抗体检测技术(indirect im-munofluorescence assay test,IFAT)、Western-blotting免疫印迹检测技术。IFAT结果显示阳性信号覆盖整个菌体,明亮,清晰,荧光信号呈长弧形且两端钝圆,与鱼肠道弧菌形状一致。Western-blotting结果显示共10条蛋白带发生免疫反应,其中6条蛋白带结果较清晰,显示出较强的特异性免疫反应,阴性对照组无条带。IFAT和Western-blotting结果说明所建立检测方法能够准确、快速的检测出鱼肠道弧菌。     

The Fluorescent Characterization and Analysis of Two Brucella Attenuated Vaccine Infecting Mouse Macrophagocyte

The experiment was conducted to discuss the difference of binding time of green fluorescent protein B.melitensis M5 (GFP-M5) and B.abortus S19 (GFP-S19) infecting the mouse macrophagocyte (RAW264.7),lysosome,endoplasmic reticulum and golgi body in the initial stage and compare the binding rate of GFP-M5,GFP-S19 with organelle in different timeline,respectively,by confocal laser scanning microscope (CLSM) and flow cytometry.The result showed that GFP-M5 and GFP-S19 were successfully constructed.The intracellular survival ability of Brucella M5,Brucella S19,GFP-M5 and GFP-S19 were not obvisouly affected after infecting RAW264.7.GFP-M5 and GFP-S19 could enter the macrophagocyte in 30 mins,and in 2 h the Brucella could reach lysosome,endoplasmic reticulum and golgi body.In addition,the binding time for two attenuated vaccine did not show differences in 1,2,3 and 4 h.The content of GFP⁺ cell produced by RAW264.7 infected by GFP-M5 and GFP-S19 did not show significant differences (P>0.05).Therefore,the two strains did not have significant differences in the invasion ability in the initial stage of infecting host cell.     

Establishment of a Duplex Real-time RT-PCR Assay for the Differential Detection of Nipha Virus and Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus

To establish a rapid,sensitive and specific assay for the differential detection of Nipah virus (NiV) and highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV),a duplex Real-time RT-PCR was developed with specific primers and probes targeting to the special sequences of NiV M gene and HP-PRRSV nsp2 gene by optimization of reaction conditions.The performance of the assay was linear ranging from 4.6×10¹ to 4.6×10⁷ copies/μL for RNA standard control of NiV M (NiV-M-RNA) and from 4.1×10¹ to 4.1×10⁸ copies/μL for RNA standard control of HP-PRRSV nsp2 (HP-PRRSV-nsp2-RNA),and detection limits of the assay was 46 copies for the NiV-M-RNA and 4.1 copies for the HP-PRRSV-nsp2-RNA,respectively.The coefficients of variation (CVs) of both inter-assay and intra-assay repeatability were less than 2.0%,showing good repeatability.The assay was able to specifically detect NiV and HP-PRRSV simultaneously without cross-reaction with classical swine fever virus (CSFV),porcine epidemic diarrhea virus (PEDV),swine influenza virus (SIV),porcine parvovirus (PPV),pseudorabies virus (PRV) and porcine circovirus type 2 (PCV2).Of the 236 samples from pigs for both NiV and HP-PRRSV detection by the established assay,all the samples were negative for NiV,8 samples were HP-PRRSV positive.In conclusion,this assay offers a useful approach for the differential detection of NiV and HP-PRRSV in clinical specimens from the pigs.     

羊源性成分LAMP检测方法的建立

根据羊cyt B基因设计3对特异性引物,运用GenieⅡ等温扩增荧光检测系统,以LAMP荧光检测方法为基础,建立了检测羊源性成分的LAMP方法,并对该方法进行了反应体系和条件的优化。试验结果表明:该方法操作简单、特异性好;灵敏度比普通PCR方法高100倍,比q PCR方法低10倍,达到5.928×10-3μg/μL;反应时间短,最快10 min即可完成反应。     

猪捷申病毒荧光定量RT-PCR检测方法的建立与应用

参考Gen Bank中猪捷申病毒(PTV)基因序列,通过比对分析,设计引物和Taq Man探针,建立荧光定量RT-PCR检测方法。该方法的最低检测灵敏限度为12.6拷贝/μL,组内组间重复试验的变异系数均小于2%,具有较好的特异性,对猪常见病原如猪瘟病毒、猪传染性胃肠炎病毒、猪繁殖与呼吸综合征病毒、猪圆环病毒和伪狂犬病病毒等均没有特异性扩增。用本研究建立的荧光定量RT-PCR方法检测来自猪场的156份猪粪便,阳性检出率为38.5%,与套式RT-PCR符合率达100%,表明本试验建立的荧光定量RT-PCR方法适用于PTV的快速批量筛检,为PTV感染的流行病学调查提供了必要的技术手段。     

兔源强毒力金黄色葡萄球菌荧光定量PCR检测方法的建立

为了建立一种快速、特异性强且敏感性高的兔源强毒力金黄色葡萄球菌检测方法,本试验根据金黄色葡萄球菌pvl基因的保守序列设计了特异性的引物和探针,通过反应条件的优化,建立了检测兔源强毒力金黄色葡萄球菌的荧光定量PCR检测方法。结果显示,该方法耗时短,仅需约50 min就能完成检测,较已报道的双重PCR方法和环介导等温扩增方法均省时;该方法特异性强,对兔源低毒力金黄色葡萄球菌、多杀性巴氏杆菌、支气管败血波氏杆菌、肺炎克雷伯菌、魏氏梭菌、大肠杆菌和阴性对照(灭菌ddH₂O)均无交叉反应;该方法敏感性高,最低检测限为10拷贝/μL,分别是已报道的双重PCR方法和环介导等温扩增方法的1 000倍和10倍。此外,该方法重复性好,批内和批间重复性试验的变异系数均小于2%。应用该方法检测126份已知结果的临床样品,检测结果与已知结果、已报道的双重PCR方法和环介导等温扩增方法的检测结果完全一致。该方法的建立不仅丰富了兔源强毒力金黄色葡萄球菌的检测方法,也为该菌的快速检测提供了更有力的技术支持。     

基于SSR的154份梨地方品种的遗传多样性与群体结构分析

利用荧光SSR引物分析154份梨地方品种的遗传多样性和遗传结构,为梨种质资源收集保存、品种改良、种质创新和资源利用提供理论依据。17对SSR引物在154份梨地方品种中检测到多态性位点303个,不同引物的扩增位点在10 ~ 27间不等,平均等位基因数为17.824个;观测杂合度Ho变异范围0.312（NAUpy09t）~ 0.851（NAUpy08t）之间,平均值为0.690;期望杂合度He变异范围0.613（NH029a）~ 0.919（位点NAUpy08t）,平均值为0.822;多态性信息含量（PIC）值变异范围0.578（位点NH029a）~ 0.913（位点NAUpy08t）之间,平均值0.805;12个群体的遗传距离为0.181~1.576,遗传相似系数为0.207 ~ 0.834;贝叶斯遗传结构分析表明,当K=4时,△K值最大,154个梨地方品种可以划分为4个亚群,140份（90.91%）供试材料的Q值≥0.6,血缘相对单一,另外14份材料的Q值<0.6具有混合来源,遗传背景较为复杂。广东品种群与其他地区品种亲缘关系较远,基因来源单一且独特,属于特殊基因群。个体聚类分析显示在0.54处将154个品种分为8个类群,个体聚类结果与其遗传背景相关。     

检测柑橘黄龙病的四对常规PCR引物特异性和灵敏度比较

柑橘黄龙病是目前危害柑橘产业的重要危险性病害,实验室中通过PCR技术检测柑橘黄龙病是最有效的方法,因此,确定一组特异性好、灵敏度高的引物至关重要。本文通过荧光定量PCR标定柑橘黄龙病菌核酸浓度的方法,对目前各实验室常规PCR应用比较广泛的4对引物（P400F/R、P535F/R、OI1/OI2,16SF/R）做了特异性和灵敏度的比较。结果发现4对引物均能排除其它来源核酸的干扰,表现出明显的特异性,但在灵敏度方面4对引物差别很大,灵敏度结果是依次为：16SF/R＞P400F/R ＞P535F/R=OI1/OI2,灵敏度最高的16SF/R引物检测柑橘黄龙病菌核酸含量约为1.87×10﹣2 ng/μl。本研究结果为实验室开展检测柑橘黄龙病研究提供了很好的理论与实践基础     

定量分析柑橘黄龙病菌在沙糖橘中的分布

柑橘黄龙病是由难培养的革兰氏阴性菌“Candidatus Liberibacter asiaticus”引起的严重为害柑橘的系统性病害。本研究通过实时荧光PCR 检测黄龙病菌在沙糖橘上的分布情况,结果表明不同部位黄龙病病菌浓度存在较大差异。其中果实中橘络部位病菌含量最高,且病原菌在果实中呈现富集的状态。本研究结果可为病原菌在植株体内的转运规律提供参考。