Diazotroph community structure and abundance in wheat–fallow and wheat–pea crop rotations

Biological input of nitrogen (N) from the atmosphere by free-living diazotrophs can help alleviate fertilizer use in agricultural systems. In this study, we investigated the effect of N fertilizer and winter pea (Pisum sativum L.) crop on the community structure and abundance of free-living diazotrophs in a two year study of dryland winter wheat (Triticum aestivum L.) no-till production system in Eastern Oregon, USA. Based on quantification of the nifH gene, diazotroph abundance was strongly influenced by plant species and the crop year in which the soil samples were collected. A greater amount of nifH copies was recovered in 2012 compared to 2011 either as copies per gram soil or normalized to the abundance of bacterial 16S rRNA genes. The quantity of genes was greater under pea than wheat in 2012 although no difference was observed in the preceding year. The nifH gene abundance was positively correlated to ammonium concentration in 2011 and bacterial abundance in 2012. Nitrogen application did not influence diazotroph abundance in the top 0–5 cm; however the abundance was reduced by application at the lower 5–10 cm depth under wheat crop. The diazotroph community structure appeared to be influenced more by N fertilization rather than plant species with the exception of wheat in 2012. Changes in the community structure over the two years were greater for fertilized than unfertilized soil. Collectively, these data suggest that year-to-year variability had a greater influence on diazotroph communities rather than specific parameters of plant species, fertilization, total N, total organic C, or soil pH. Multi-year studies are necessary to define the specific drivers of diazotroph abundance, community structure and function.     

Analysis of sinking death using video images of the swimming performance of Pacific Bluefin tuna (Thunnus orientalis) larvae

In this study, we aimed to clarify the mechanism of sinking death during the larval stage of Pacific Bluefin tuna Thunnus orientalis by investigating the effects of swimming performance on sinking death, using a behavioral approach. Swimming performance was examined 3–9 days after hatching (DAH) under day and night light conditions in cuboid experimental tanks. Swimming behavior variables such as swimming speed and swimming angle were measured under both light conditions. Larvae in the daytime experiment and larvae with inflated swim bladders at night were distributed on the surface layer of the water column. In contrast, larvae with uninflated swim bladders at night were frequently observed swimming vertically or sinking to the bottom of the tank. Larvae with inflated swim bladders at night were always distributed beneath the surface until the next morning (survival rates were 100 %). However, larvae with uninflated swim bladders at night swam upward repeatedly and later sank to the bottom of the tank (survival rates were 60 % and 38 % at 5 and 9 DAH, respectively). Larvae with uninflated swim bladders were not always able to maintain their swimming depth by swimming until the next morning. Additionally, their swimming speed and vertical swimming frequency (ratio) depended on the illumination and swim bladder conditions. Our findings show that larvae with uninflated swim bladders at night were associated with a higher risk of sinking death. The swimming energy capacity of Pacific Bluefin tuna larvae, which indicates the total amount of the energy that enables individuals to swim throughout the night without feeding, was found to be linked to sinking death.     

Japanese service sector multinationals and the hierarchy of Pacific Rim cities

The explosive growth of Japanese service sector activities overseas since 1985 has had a significant impact on Pacific Rim cities. However, previous accounts of Japanese direct foreign investment in services have been constrained by official statistics which provide comparative information only at a national level. This paper uses establishment level data to assess changes in the spatial patterns of Japanese service firms among 35 cities as well as changes in the hierarchy of cities in the Pacific during the years 1985 to 1995. The period saw important changes in Japan’s economy such as the emergence of a ‘bubble economy’ up to 1990 and domestic recession after that. The results show the importance of Hong Kong, Singapore and Los Angeles as centres of Japanese service firms. However, the analysis indicates that a shift occurred in Japanese service sector focus over the study period, across the Pacific Rim from North America and Oceania to cities of the Asia-Pacific region. Along with that shift the concentration of services in just a few cities has remained unchanged, even though some new cities have emerged in importance.     

Body size trends along vertical and thermal gradients of chum salmon in the Bering Sea during summer

Relationships between the vertical distribution and thermal habitat, and body size of chum salmon Oncorhynchus keta were studied in the Bering Sea in summer using trawl surveys at various depths. Chum salmon abundance decreased with increasing depth, but the patterns of decrease differed between size groups. The abundance of small salmon fell rapidly with depth, whereas that of large salmon decreased gradually to 40 m depth, and abruptly below that. The average fork length of chum salmon collected from each trawl correlated positively with trawl net depth and negatively with water temperature. Since the optimal temperature for growth decreases with body size in this species, the observed body size‐related vertical habitat use by chum salmon may indicate size‐dependent thermal preferences.     

Effects of supplementation of crystalline or coated methionine on growth performance and feed utilization of the pacific white shrimp,Litopenaeus vannamei

This study was conducted to evaluate the effects of supplementation of crystalline methionine or coated methionine supplemented in diets of Pacific white shrimp (Litopenaeus vannamei) on growth performance and feed utilization. Five iso‐nitrogen and iso‐caloric diets were prepared in which diets were supplemented with cellulose‐acetate‐phthalate (CAP), tripalmitin‐polyvinyl alcohol (TPA), acrylic resin (RES) coated l ‐methionine, hydroxyl‐methionine calcium (MHA) and crystalline l ‐methionine diet (MET, control), respectively. After 7 weeks, shrimp (0.81 ± 0.01 g in initial body weight) weight gain fed with MET and RES diets were significantly higher than that of the others (P < 0.05), while feed conversion ratio of shrimp fed with RES was significantly lower than the others (P < 0.05). Crude protein (as wet weight basis) in whole body of shrimp fed the RES diet was markedly higher than the others (P < 0.05). Methionine contents in muscle of CAP and MHA groups were significantly higher than those of MET group (P < 0.05). Apparently digestibility for essential amino acid of MET group was the highest except methionine. In the present study, RES coating methionine appeared to effectively improve feed protein utilization and enhance growth performance of Pacific white shrimp fed with low fishmeal practical diet.     

北太平洋远东拟沙丁鱼渔场时空分布及其最适环境特征

基于2019—2020年北太平洋灯光敷网渔业数据和海表温度、叶绿素、海面高度等环境数据,采用空间叠加图、频次分析与经验累积分布函数、K-S检验和GAM模型4种方法分析了远东拟沙丁鱼(Sardinops sagax)渔场的单位捕捞努力量(CPUE)时空分布特征及与关键环境因子的相关关系。分析结果显示,作业渔场重心分布范围为147°~153°E、39°~43°N,在4—8月向东北方向移动,9—11月则向西南方向折返。通过频次分析与经验累积分布函数分析,中心渔场区域最适海表温度为10.0~18.0 ℃,最适叶绿素浓度为0.2~0.6 mg/m3,最适海面高度为0.2~0.7 m。K-S检验分析表明,高值CPUE海域和海表温度、叶绿素浓度、海面高度均有密切关系,最适范围分别为10.9~18.9 ℃、0.2~0.6 mg/m3、0.2~0.7 m。GAM模型模拟结果表明,高值CPUE的最适海表温度为11.0~17.0 ℃,最适叶绿素浓度为0.3~0.8 mg/m3,最适海面高度为0.1~0.4 m。综合来说,CPUE高值区海域的最适海表温度为11.0~18.0 ℃,叶绿素浓度为0.2~0.6 mg/m3,海面高度为0.2~0.7 m。     

Effects of ontogeny, temperature, and light on vertical movements of larval Pacific cod (Gadus macrocephalus)

The role of behavior, especially vertical migration, is recognized as a critical component of realistic models of larval fish dispersion. Unfortunately, our understanding of these behaviors lags well behind our ability to construct three-dimensional flow-field models. Previous field studies of vertical behavior of larval Pacific cod ( Gadus macrocephalus ) were limited to small, preflexion stages (≤11 mm SL) in a narrow range of thermal conditions. To develop a more complete picture of larval behavior, we examined the effects of ontogeny, temperature, and light on vertical responses of larval Pacific cod in experimental columns. While eggs were strictly demersal, yolk-sac larvae displayed a strong surface orientation as early as 1 day post hatch (∼ 5 mm SL). Consistent with field observations, small preflexion larvae (<10 mm SL) showed no response to varying light levels. However, there was a direct effect of temperature on larval behavior: Pacific cod larvae exhibited a stronger surface orientation at 4°C than at 8°C. The behavior of larger, postflexion larvae (>15 mm SL) in experimental columns was consistent with a diel vertical migration and independent of water temperature: fish were more widely distributed in the column, and median positions were consistently deeper at higher light levels. These laboratory observations are combined with observations from discrete-depth (MOCNESS) sampling in the Gulf of Alaska to characterize the vertical distribution of larval Pacific cod and contrast ontogenetic patterns with walleye pollock ( Theragra chalcogramma ). The vertical movements of larval Pacific cod described here will be applied in the development of dispersal projections from Gulf of Alaska spawning grounds.     

What the past tells us about the future of Pacific salmon research

The Larkin lectures are held every two years at the University of British Columbia in recognition of Dr. Peter Larkin's contributions to fisheries science. The lecture I presented in November 2015 coincided with an announcement that the Institute of Fisheries that Peter Larkin founded in the 1960s would be restructured as the “Institute for Oceans and Fisheries” with an emphasis on fisheries and oceans issues important to British Columbia as well as the rest of the world. I decided to look back at research issues that Peter Larkin thought would be important for Pacific salmon (Oncorhynchus spp.) in the future and see what has happened as a way of identifying the complexity that the Institute for Oceans and Fisheries in particular and the science community in general will face. I chose five themes from Peter Larkin's talks: 1 understanding marine survival, 2 ocean carrying capacity, 3 aquaculture, 4 climate, Pacific salmon and climate change and 5 informing the public, and then added my opinion about research priorities for the future. Peter Larkin recognized the future relevance of these examples, but he probably could not have imagined how these and related issues will challenge his renamed institute and the rest of the research community over the next 50 years.     

Effect of disinfection with peracetic acid on the microbial community of a seawater aquaculture recirculation system for Pacific white shrimp (Litopenaeus vannamei)

When tropical shrimps are kept in recirculating aquaculture systems (RAS), one of the limiting factors is the maintenance of a sufficient water quality, and therefore, often disinfectants like peracetic acid (PAA) are added to the water either as prophylactic or treatment measure. In this study, PAA in concentrations of 0.1 mg/L, 1 mg/L and 10 mg/L was applied continuously for 56 days to small-scale seawater RAS stocked with Litopenaeus vannamei. Treatment with 0.1 mg/L did not result in a reduction in the total bacterial amount and therefore was not effective. A concentration of 10 mg/L led to significant changes in the chemical water parameters already after 2 days and was therefore not recommendable. A concentration of 1 mg/L led to increased levels of ammonia and nitrite within 2 days and to a significant increase in the bacterial amount in the water, most probably due to an enhanced growth of heterotrophic bacteria. The microflora showed significant fluctuations, and there were indications that the welfare of the shrimps was affected. Using 1 mg PAA/L for prophylactic use is therefore also not recommendable but might be an alternative option for short-term treatment in cases of disease outbreaks.     

Time‐varying relationships between ocean conditions and sockeye salmon productivity

Environmental change is occurring at unprecedented rates in many marine ecosystems. Yet, environmental effects on fish populations are commonly assumed to be constant across time. In this study, I tested whether relationships between ocean conditions and productivity of North American sockeye salmon (Oncorhynchus nerka) stocks have changed over the past six decades. Specifically, I evaluated the evidence for non‐stationary relationships between three widely used ocean indices and productivity of 45 sockeye salmon stocks using hierarchical Bayesian models. The ocean indices investigated were the Pacific Decadal Oscillation (PDO), North Pacific Gyre Oscillation (NPGO), and sea surface temperature (SST). I found partial support for time‐varying salmon–ocean relationships. Non‐stationary relationships were strongest for the NPGO and weaker for the SST and PDO indices. Productivity–NPGO correlations tended to shift gradually over time with opposite trends for stocks in British Columbia (B.C.) and western Alaska; for B.C. stocks, the NPGO correlations shifted from significantly negative prior to 1980 to significantly positive after 1990, whereas for western Alaska stocks, the correlations shifted from positive to negative. Productivity–SST correlations showed declining trends for B.C. and Gulf of Alaska stocks, that is, correlations became more negative (B.C.) or less positive (Gulf of Alaska) over time. For the PDO, correlations weakened during the 1980s for western Alaska and B.C. stocks. Overall, these results provide evidence for time‐varying relationships between salmon productivity and environmental conditions over six decades, highlighting the need to recognize that historical responses of salmon populations to environmental change may not be indicative of future responses.