一种改进的尖孢镰刀菌的实时荧光定量PCR检测方法

为实现荧光定量PCR对土壤病原真菌数量更为高效、灵敏的检测,本研究将液体培养的孢子悬浮液和长年耕作的水稻土制作成孢子浓度为4×10~1~4×10~6 spore/g的带菌土,采用MoBio PowerSoil@DNA Isolation Kit提取模拟带菌土壤总DNA,引入常规PCR预扩增包含qPCR目标序列的1 446bp片段,以预PCR产物为模板进行qPCR,构建荧光定量PCR标准曲线。研究结果表明:以试剂盒提取的带菌土壤总DNA为模板绘制的qPCR标准曲线相关系数r为0.985,检测下限为4×10~3 spore/g土;引入预PCR后,qPCR标准曲线相关系数r为0.974,检测下限为4×10~2 spore/g土,较未引入时提高了10倍,结合不同土壤病原真菌的特异性引物,该检测方法可为土壤病原真菌的有效定量检测提供技术支撑。     

土壤因子对海洋多粘类芽胞杆菌L_1-9在黄瓜根表土壤定殖的影响

本试验考察了土壤温度、有机质含量和pH对海洋生防细菌多粘类芽胞杆菌L_1-9在黄瓜根表土壤中定殖的影响。采用实时荧光定量PCR方法检测了不同时期黄瓜根表土壤中菌株L_1-9的16S r DNA拷贝数。结果表明,土壤有机质含量、土壤温度和pH对菌株L_1-9在黄瓜根表的定殖有显著影响(P0.01)。25℃定殖数量最高,为5.79×108拷贝/g土,是15℃时的3.4倍;添加有机肥20~40 g/kg土壤,可以促进菌株L_1-9在黄瓜根际定殖;pH 7时,菌株L_1-9在黄瓜根表土壤中的定殖数量最高。本研究为海洋生防菌L_1-9防治黄瓜土传病害提供了理论依据。     

贵州复烤片烟中水溶性糖和烟碱近红外速测定量模型的建立

[目的]建立复烤片烟中水溶性糖和烟碱含量的近红外速测定量模型。[方法]基于近红外光谱法,选取各等级片烟样品共284个,使用偏最小二乘法(PLS)建模,定量分析贵州主要产区的复烤片烟中的水溶性糖(总糖、还原糖)和烟碱含量。人工确定光谱区间为9 002.45~4 069.19 cm~(-1),采用一阶导数结合Savitzky-Goly(SG)平滑滤波进行光谱预处理。考察了模型精密度,并将标准方法和近红外方法测得的结果进行了对比。[结果]复烤片烟中的总糖、还原糖、烟碱3种成分预测模型的相关系数r分别为0.996 8、0.987 2、0.9951,交互验证均方差(RMSECV)分别为0.354、0.558、0.067。[结论]模型精密度良好,2种方法不存在显著差异,近红外方法适合烟草中的水溶性糖和烟碱快速定量分析。     

Establishment of Digital RT-PCR Assay for Detection of Swine Influenza Virus H3N2 Subtype

A new assay for the detection of swine influenza virus (SIV) was developed with a novel nucleic acid probe——Molecular beacon in this study. The specific primers and molecular beacon probes were designed according to the conserved region of H3 and N2 genes of SIV H3N2 subtype. A digital RT-PCR assay was developed for detection of SIV H3N2 subtype. The results showed that SIV H3N2 subtype could be identified simultaneously on this microarry with high sensitivity and reproducibility,which could reach to 10⁶ dilute viruse. The conclusion was that the digital RT-PCR method could analyze quantitatively the RNA templates.On the identification of H3N2 SIV,the digital RT-PCR method was much more scientific than Real-time quantitative PCR method.     

无血清条件下UC-MSCs和BMECs共培养对IGF-Ⅰ表达的影响

试验旨在探讨无血清条件下脐带间充质干细胞（UC-MSCs）和奶牛乳腺上皮细胞（BMECs）共培养对类胰岛素样生长因子-Ⅰ（IGF-Ⅰ）表达的影响,将UC-MSCs和BMECs按1：2直接共培养,对比单纯培养的两种细胞,48 h时利用ELISA法检测各组上清IGF-Ⅰ浓度水平,再利用Transwell小室将两种细胞分离培养,实时荧光定量 PCR检测各组细胞IGF-ⅠR、IGF-Ⅰ mRNA的表达。结果显示,共培养中IGF-Ⅰ浓度显著高于UC-MSCs组（P < 0.05）,极显著高于BMECs组（P < 0.01）;UC-MSCs/BMECs、BMECs/UC-MSCs组IGF-Ⅰ mRNA表达值均极显著高于单纯培养组（P < 0.01）,BMECs/UC-MSCs组显著高于UC-MSCs/BMECs组（P < 0.05）;UC-MSCs/BMECs、BMECs/UC-MSCs组IGF-ⅠR mRNA表达值显著或极显著高于单纯培养组（P < 0.05;P < 0.01）,BMECs/UC-MSCs组较UC-MSCs/BMECs组差异显著（P < 0.05）。综上,体外无血清培养条件下,UC-MSCs和BMECs共培养可显著提高IGF-ⅠR及IGF-Ⅰ mRNA表达,IGF-Ⅰ浓度水平和IGF-ⅠR mRNA的表达具有一致性,IGF-Ⅰ主要存在于UC-MSCs中。     

Cloning and Tissue Expression Analysis of PDK4 and FGF10 Genes in Guizhou Congjiang Xiang Pig

The objective of this study was to clone PDK4 and FGF10 genes, and investigate the expression level of PDK4 and FGF10 genes mRNA in different tissues of Large White pig and Congjiang Xiang pig. The PDK4 and FGF10 genes were cloned by RT-PCR and analyzed by bioinformatics, the relative expression of PDK4 and FGF10 genes were detected by Real-time PCR. The results showed that the coding region of PDK4 gene was 1 224 bp, encoding 407 amino acids; The coding region of FGF10 gene was 636 bp and encoded 211 amino acids. The homologies of nucleotide sequences of PDK4 gene with sheep, horse and human were 93%, 92% and 91%,respectively. The homologies of nucleotide sequences of FGF10 gene with sheep, cattle, human and mouse were 94%,93%, 93% and 90%, respectively. The phylogenetic tree of PDK4 gene showed that the genetic relationship of Congjiang Xiang pig, cattle and sheep were very close, the phylogenetic tree of FGF10 gene indicated that the genetic relationship of Congjiang Xiang pig, cattle, sheep, human and macaque were very close, but the genetic relationship of Congjiang Xiang pig, rat and chicken were far away. Real-time PCR results showed that, in different tissues of Congjiang Xiang pig,PDK4 gene expression in kidney tissue was higher than other tissues, with a higher expression in stomach and adipose as well,FGF10 gene expression in stomach tissue was higher than other tissues, with a higher expression in kidney and adipose as well, but both of PDK4 and FGF10 genes expression were the lowest in longissimus dorsi. In different tissues of Large White pig, both of PDK4 and FGF10 genes were expressed the highest in adipose than other tissues, PDK4 gene expression in longissimus dorsi was the lowest, while the FGF10 gene expression the lowest in heart. This study successfully cloned the PDK4 and FGF10 genes of Large White pig and Congjiang Xiang pig,and detected the relative expression of PDK4 and FGF10 genes in different tissues of Large White pig and Congjiang Xiang pig, and also provided scientific basis for further study on regulation of PDK4 and FGF10 genes on lipid metabolism and deposition.     

树鼩Tssk6基因cDNA克隆、组织表达谱及生物信息学分析

本研究旨在克隆出树鼩Tssk6基因cDNA的全长序列,阐明其组织表达谱及基本生物信息学特征。以GenBank中收录的树鼩Tssk6基因mRNA预测序列为参考设计特异性引物,对树鼩Tssk6基因的cDNA全长序列进行克隆,用实时荧光定量PCR检测该基因在树鼩不同组织中的表达情况,并对cDNA序列的CDS区核苷酸序列与蛋白质结构进行了生物信息学分析。结果显示,树鼩Tssk6基因cDNA的CDS区序列长度为822 bp,编码273个氨基酸;Tssk6基因仅表达于树鼩睾丸组织;对树鼩和其他8种哺乳动物Tssk6基因cDNA的CDS区核苷酸序列构建的系统进化树显示,树鼩与人、黑猩猩、恒河猴3种灵长类动物亲缘关系较近,与小鼠、大鼠、金仓鼠3种啮齿类动物亲缘关系较远。本研究为进一步研究树鼩Tssk6基因的功能奠定了基础。     

小檗碱对禽源大肠杆菌抑菌作用及耐药消除作用的转录组学分析

为了探究中药对大肠杆菌抗生素耐药性的消除机制,以小檗碱为处理药物,使用小檗碱浓度为250 μg/mL （1/2最小抑菌浓度（MIC））的LB肉汤培养临床分离的禽源耐药大肠杆菌,每隔24 h传一代,共传3代。对第3代菌液以影印法分离突变菌,以微板法测定突变菌的左氧氟沙星MIC。经测定发现突变菌对左氧氟沙星的MIC由16 μg/mL降至8 μg/mL,说明对左氧氟沙星的耐药性具有消除作用。为了解小檗碱作用大肠杆菌的分子机制,通过转录组测序方法对耐药性消除前后禽源大肠杆菌基因表达水平进行对比分析。结果显示,小檗碱作用后共有45个基因的表达量发生显著变化,其中有30个基因表达量上调,15个基因表达量下调。经过GO功能富集分析和KEGG代谢通路富集分析,发现上调主要为：与色氨酸合成有关的基因,磷酸吡哆醛结合相关3个基因,表达转酮酶基因;下调主要为：双组份系统中多个基因,十一异戊二烯焦磷酸磷酸酶（UppP）编码基因ybjG,酰基辅酶A脱氢酶合成有关的基因。推测大肠杆菌体内酶活性降低是小檗碱抑菌的主要机制;大肠杆菌多重耐药外排泵表达降低、细胞膜和细胞壁成分的改变是小檗碱耐药性消除的主要机制。     

70周龄长顺绿壳蛋鸡HO-1基因在不同组织中表达差异研究

为研究HO-1基因在70周龄长顺绿壳蛋鸡不同组织中的表达差异,选取70周龄长顺绿壳蛋鸡9只（每种基因型3只）,采集每只鸡的大脑、肝脏、肾脏、卵巢、输卵管和子宫组织,提取其总RNA进行反转录,利用实时荧光定量 PCR方法检测样品中HO-1基因的表达水平,比较同一组织不同基因型及同一基因型不同组织间HO-1基因mRNA 的表达差异。结果表明,在同一组织不同基因型及同一基因型不同组织间HO-1基因的表达存在差异;其中HO-1基因在肝脏中表达量最高,且3种基因型间肝脏表达量存在极显著差异（P< 0.01）;白壳蛋鸡子宫中HO-1基因表达量极显著高于其他两种（P< 0.01）,纯合绿壳蛋鸡与杂合绿壳蛋鸡无显著差异（P> 0.05）。