Single step genomic evaluation for female fertility in Nordic Red dairy cattle

Joint Nordic (Denmark, Finland, Sweden) genetic evaluation of female fertility is currently based on the multiple trait multilactation animal model (BLUP). Here, single step genomic model (ssGBLUP) was applied for the Nordic Red dairy cattle fertility evaluation. The 11 traits comprised of nonreturn rate and days from first to last insemination in heifers and first three parities, and days from calving to first insemination in the first three parities. Traits had low heritabilities (0.015–0.04), but moderately high genetic correlations between the parities (0.60–0.88). Phenotypic data included 4,226,715 animals with records and pedigree 5,445,392 animals. Unknown parents were assigned into 332 phantom parent groups (PPG). In mixed model equations animals were associated with PPG effects through the pedigree or both the pedigree and genomic information. Genotype information of 46,914 SNPs was available for 33,969 animals in the pedigree. When PPG used pedigree information only, BLUP converged after 2,420 iterations whereas the ssGBLUP evaluation needed over ten thousand iterations. When the PPG effects were solved accounting both the pedigree and the genomic information, the ssGBLUP model converged after 2,406 iterations. Also, with the latter model breeding values by ssGBLUP and BLUP became more consistent and genetic trends followed each other well. Models were validated using forward prediction of the young bulls. Reliabilities and variance inflation of predicted genomic breeding values (values for parent averages in brackets) for the 11 traits ranged 0.22–0.31 (0.10–0.27) and 0.81–0.95 (0.83–1.06), respectively. The ssGBLUP model gave always higher validation reliabilities than BLUP, but largest increases were for the cow fertility traits.     

喀斯特山区2个鲫鱼群体基于转铁蛋白的遗传多样性研究

为了解喀斯特山区2个不同鲫鱼群体在蛋白质水平的遗传多样性及其遗传差异,运用聚丙烯酰胺凝胶电泳方法对喀斯特山区2个群体鲫鱼的血清转铁蛋白电泳表型及多样性进行研究。结果表明:群体克隆多样性指数表现为草海鲫鱼(0.32)﹥红鲫(0.25,对照)﹥普安鲫鱼(0.13);3个鲫鱼群体的13个克隆由9个不同的等位基因产生,等位基因的频率分别为Tf~a0.144 9、Tf~b0.202 9、Tf~c0.036 2、Tf~d0.058 0、Tf~e0.007 2、Tf~f0.239 1、Tf~g0.014 5、Tf~h0.275 4、Tf~i0.029 0;普安鲫鱼与草海鲫鱼和红鲫无共享的基因型;普安鲫鱼与草海鲫鱼之间的遗传相似性指数较高(0.714 3),遗传距离较小(0.285 7)。总体来看,草海鲫鱼的克隆多样性水平较高,其转铁蛋白多样性程度较普安鲫鱼丰富;2个群体之间存在较近的亲缘关系,未达到遗传距离种的分化标准。     

立式无筛饲料超微粉碎机的研发及质量检测分析

介绍了我国立式无筛饲料超微粉碎机的发展,简述立式无筛饲料超微粉碎机的组成、工作原理和优越性,分析质量检测及立式无筛饲料超微粉碎机技术的发展,展望制定行业标准的预期效果。     

人工合成小麦紫色胚芽鞘的遗传定位分析

为探明小麦花青素色素沉积的关键位点,以167份重组自交系群体为材料,利用已构建的高密度遗传图谱对来源于硬粒小麦(AABB)和节节麦亚种tauschii(DD)杂交后所得的人工合成小麦SHW-L1中控制紫色胚芽鞘的基因进行遗传定位。同时利用目标性状关联遗传区段对SHW-L1及其亲本进行基因型鉴定。结果表明:目标性状在重组自交系群体中表现为单基因遗传,且被定位于7D染色体,其关联遗传区段在异源六倍化过程中有遗传位点缺失。     

水质快速检测设备的硬软件设计及实现

[目的]研制本质快速检测设备,实现水质的现场多指标快速检测.[方法]对设备的硬件及软件进行了设计.硬件设计包含了1P2303芯片、锂电,Cortex-M3型ARM微控制器、树莓派显示系统、光频转换器等的设计;软件设计则包含了软件设置、项目选项、项目测量结果以及测量数据表格输出等模块的设计;并对水质快速检测设备的可靠性进行了试验检验.[结果]通过对该设计的设备硬件和软件合理搭配连接,从而研发出了水质快速检测设备.用该设备与国家标准要求的设备同时测定某一河道水样的5项指标结果发现,3个样点水样中铁、氨态氮、氟化物、硝酸盐和6价铬含量的两组数据值接近,无明显差异.虽然国家标准法检测下限比快测法高一个数量级,但快速设备的测定结果不影响操作员对水质的判断,说明该水质快速检测设备精密度高;两种测定方法的稳定性比较,结果快速测定法的5个指标数据的相对偏差略高于国家标准法(3.92％),但其测定结果能够较好地满足现场测定要求,说明该水质快速检测设备稳定性良好.[结论]该水质快速检测设备的检测精度和稳定性较高,可满足水质的现场快速检测要求.     

不同来源花生品种的ISSR分析及亲缘关系研究

利用13对ISSR引物对28个栽培种花生品种进行PCR扩增,研究这些品种的DNA多态性及其亲缘关系。结果表明,有7对引物检测到明显的多态性,从28个花生品种中扩增出90条带,其中多态性带达到79条,多态性比率为87.8%,平均每个引物可扩增出12.86条带,11.29条为多态性条带。品种间的遗传相似系数值在0.411~0.800之间,平均为0.620。在UPGMA聚类分析简单匹配系数值为0.57处,可把28个花生品种分成3个品种群。由此表明,这些不同来源的花生品种具有较高的DNA多态性,亲缘关系不同。     

结球甘蓝抽薹性遗传规律和QTL定位分析

以早抽薹‘S-1’与晚抽薹‘G-1’为亲本，构建F1、BC1、BC2和F2群体，采用植物数量性状主基因 + 多基因混合遗传模型分析法对结球甘蓝抽薹性状进行遗传分析，并采用SLAF-BSA方法对抽薹时间进行QTL定位分析。结果显示，结球甘蓝抽薹性状是由2对加性—显性—上位性主基因 + 加性—显性多基因遗传控制；主基因 + 多基因平均遗传率是93.41%。共检测到2个QTL，分别为2号染色体上的2.31 ~ 3.09 Mb和33.57 ~ 34.40 Mb，总长度为1.61 Mb。     

Relationship of Icelandic cattle with Northern and Western European cattle breeds,admixture and population structure

ABSTRACT

Icelandic cattle is believed to have been brought from Norway during the settlement of Iceland around AD 870-930. Previous research on genetic relationships has indicated that Icelandic cattle is most related to northern Nordic indigenous breeds. Using single nucleotide polymorphism genotype data from Icelandic cattle and 29 Northern and Western European cattle breeds, we studied relationships and admixture among these breeds, and assessed population structure in Icelandic cattle. Population structure analysis through principal component analysis, estimation of ancestry, and analysis of patterns of population splitting and mixing revealed that Icelandic cattle are most related to three Finncattle breeds (Eastern, Northern and Western Finncattle), and Swedish Mountain cattle. Icelandic cattle has very low levels of admixture. We observed very limited population structure in Icelandic cattle. The observed structure was due to variable sire contributions. Over 1000 years of almost complete isolation has made Icelandic cattle highly genetically distinct from other cattle breeds.     

Collembola in ecotoxicology—Any news or just boring routine?

Despite the uncontested significance of soils for human nutrition and drinking water quality, the majority of ecotoxicological testing is confined to aquatic test systems. Among the standardised tests for soils, the reproduction test with the springtail Folsomia candida is among the most widely used ones. First steps towards its standardisation were undertaken in the late 1980s. Here we review major advances that have been made since then, with respect to mechanistic, pragmatic and ecological aspects. Specifically we address the ecological relevance of any modifications of the standardised tests. We introduce a miniaturised version of the reproduction test which allows reducing the amount of soil per test unit to one third and the number of synchronised individuals to 40% as compared to the standard test. In addition, we developed an assay using Collembola eggs instead of synchronised adults. First results of a three-species test indicate that the presence of other species may affect choice behaviour. We point out a potential biased view of existing ecotoxicological data with Collembola due to the fact that most results refer to metal contamination. Finally, recommendations for future research are given, with special reference to avoidance and microcosm tests involving Collembola.