Model Optimization of Litter Size and Genetic Analyses of Model Parameters in Sows

According to two properties of the life cycle and to fluctuation with parities, four mathematical models, the Poisson cycle model, the cubic polynomial model, the modified quadratic polynomial model-I and the modified quadratic polynomial model-II, were used to fit the records of litter size in Jiangquhai sows. From the viewpoint of statistics and biological significance, the modified quadratic polynomial model-I was found to be the optimum model. A single trait animal model and DFREML procedures were further used to estimate the heritability values of optimum model parameters. The results show that the heritability values for the coefficients A and B and the heritability value for the acme of the model pure quadric curve are larger than the heritability value for the litter size. This suggests that selection for model parameters may be more effective than direct selection for litter size.     

Genetic parameters for litter traits at different parities in purebred Landrace and Yorkshire pigs

Comparison of the multi‐trait animal model and the traditional repeatability model was carried out using data obtained from 6,424 Landrace and 20,835 Yorkshire sows farrowed from January 2000 to April 2018 in order to estimate genetic parameters for litter traits at different parities. Specifically, records of the total number born (TNB), number born alive (NBA), total number of mortality (MORT), number of stillborn (NSB) and number of mummified pigs (MUM) were used. Although results showed the heterogeneity of heritability for litter traits at different parities, the mean heritability estimates from the multi‐trait model were found to be higher than those of the repeatability model for all traits in both pig breeds. In terms of genetic correlation between parities, a slight difference in genetic control in the first parity was noted for TNB and NBA in Landrace and Yorkshire pigs. The correlation between the first parity and later parities ranged from 0.48 to 0.74 for TNB and NBA in both breeds. Moreover, genetic correlation between parities for MORT and NSB was observed to be high for parities higher than 2 in Yorkshire pigs. For MUM, genetic correlation between the first and other parities was generally low in both breeds, indicating that culling pigs on the basis of MUM at the first parity could probably be unreasonable. Overall, the results of this study suggest that the multi‐trait approach for litter size traits is useful for the accurate estimation of genetic parameters.     

猪主要经济性状的基因组选择研究

旨在系统比较GBLUP、SSGBLUP、BayesA、BayesB、BayesC、BayesLASSO、BSLMM和BayesR等8种方法对猪重要经济性状基因组选择的准确性。本研究以本实验室收集的2 585头大白猪达100kg日龄、达100kg背膘厚和母猪乳头数3个性状为分析对象,结合猪50K基因芯片分型数据,以加性模型为基础,利用5倍交叉验证比较8种方法的基因组选择准确性。研究发现,基因组选择的准确性与不同性状估计遗传力呈正相关。交叉验证结果表明,预测准确性最高的性状为达100kg日龄,但不同方法在不同性状中表现并不完全相同,在达100kg日龄和达100kg背膘厚中SSGBLUP基因组预测准确性均为最高,而在母猪乳头数中BayesA的基因组预测准确性最高。综上表明,对小样本开展基因组预测时,中、高等遗传力性状可以选择SSGBLUP方法,低等遗传力性状可以选择BayesA方法。如何优化和选择一种广泛适用于所有性状的方法,可能是未来研究的方向。     

Genetic parameters for fertility traits in Nellore bulls

Nellore is the main cattle breed used in Brazil, being the largest commercial herd in the world. Beyond the importance of male reproductive efficiency for farm profit, the use of reproductive techniques, mainly artificial insemination, turns the evaluation of male reproductive traits even more important. Estimation of genetic parameters increases the knowledge on traits variances and allows envisaging the possibility of the inclusion of new traits as selection criterion. Genetic parameters for fifteen traits that can be classified as testicular biometry or physical and morphological semen traits were estimated for a Nellore bull population ranging from 18 to 36 months. Single-trait and bi-trait animal models were used for (co)variance components estimation. The contemporary group was considered as fixed effect and age at measurement as covariable. Scrotal circumference presented heritability of 0.47 ± 0.12. This value is similar to the heritabilities found for all testicular biometry traits (0.34–0.48). Sperm progressive motility, which has a direct effect on bull fertility, presented low heritability (0.07 ± 0.08). Major and total sperm defects presented moderate to high heritabilities (0.49 ± 0.18 and 0.39 ± 0.15, respectively), indicating that great genetic gain can be obtained through selection against sperm defects. High and positive genetic correlations were observed among testicular biometry traits, which also presented favourable genetic correlations with physical and morphological traits of the semen with magnitude ranging from high to low. Scrotal circumference presented moderate to high and favourable genetic correlations with sperm progressive motility, sperm turbulence, major sperm defects and total sperm defects. Thus, the selection for scrotal circumference results in favourable correlated genetic response for semen quality. The results show that the use of scrotal circumference as reference trait for bull fertility is appropriate, since it presents high heritability and favourable genetic correlation with semen quality.     

Relationships between Longevity and Linear Type Traits in Holstein Cattle Population of Southern Africa

Relationships between longevity and linear type traits were estimated using data on 34,201 cows with lifetime information and linear type scores. The longevity trait considered was the number of lactations initiated and the linear type traits were rump height, body depth, angularity, rear udder height, fore udder attachment, udder depth, fore teat placement and fore teat length. Fixed effects included in the models were herd year, season of calving and herd-date of classification-classifier and days in milk. Age at first calving and age at classification were included as linear and quadratic covariates. Heritability estimates were low for longevity and moderate for most type traits except rump height and fore teat length. All the phenotypic correlations between longevity and the linear type traits were slightly positive (0.01 to 0.09) except the relationships with rump height and fore teat length which were -0.01 and -0.02, respectively. Genetic correlations between longevity and udder traits as well as angularity were moderate to high and positive (0.22 to 0.48). The only notable negative genetic correlations were longevity with body depth and fore teat length (-0.15 and -0.07, respectively). The genetic correlations suggest that selection for udder traits and angularity should improve longevity in the Holstein cattle population.     

Physiological Predictors in Calves of Dairy Breeds: Part 1. Genetic Parameters of Basal and Induced Growth Hormone Secretion

Abstract

Genetic variation in plasma growth hormone (GH) concentration before and after GRF (growth hormone releasing factor) stimulation was studied in young bulls (N=284) and heifers (N=212), the progeny of 53 sires of four dairy and dual-purpose breeds (Danish Jersey, Red Dane, Danish Friesian and Danish Red and White). Male and female calves were reared, fed and tested on separate experimental stations; thus sex, station and feeding were completely confounded effects. The animals were tested at about 9 months of age, after a 24 h fast. GH concentration was measured in serial plasma samples collected for 1 h before and 1 h following intravenous administration of 2.0 ug synthetic GRF(1–29)NH₂/kg live weight^>0.75. Prior to statistical analysis, concentrations were log_e-transformed. Response variables were BASELINE (mean GH in -15, -5 and 0 min samples) and PEAK (mean GH in 10, 15 and 20 min samples). A statistical model taking at least three generations of ancestral relationships into account was used to estimate variance and covariance components for traits in male and female calves by use of restricted maximum likelihood methods.

Heritability of BASELINE was low (0.04 ± 0.12) in males but high in females (0.60 ± 0.16). The heritability of PEAK was high in both sexes (males, 0.42 ± 0.16; females, 0.60 ± 0.16). Genetic correlations between the same trait measured in males and females were low for BASELINE (r _g = 0.32±0.55) but high for PEAK (r _g = 0.82±0.15). Within sex, BASELINE and PEAK were both highly genetically correlated (males, r _g=0.62 ± 0.40; females, r _g= 1.00 ± 0.07).

We conclude that growth hormone concentration is a highly heritable trait in juvenile cattle of both sexes, and that GRF stimulation is benificial to the uncovering of genetic differences among animals.     

A procedure for combining a quantitative inheritance study with the first cycle of a breeding program

Summary The number of effective factors controlling the inheritance of a quantitative character can be estimated by analysis of F₃ lines where the parental lines are homozygous. The procedure is illustrated with data from a study of pod length inheritance in common bean (Phaseolus vulgaris L.). The mean pod length of Sprite, the parent with longer pods, was compared statistically with the means of F₃ progenies derived from F₂ plants obtained from the appropriate tail of the F₂ frequency distribution for pod length. The data indicate that analysis of F₃ progenies avoids much of the underestimation of the effective factor number which is characteristic of other procedures. The number of effective factors was estimated to be a minimum of 4 and the correlation between random F₂ parents and F₃ progeny means was r=0.82.Florida Agricultural Experiment Station Journal Series No. 406.     

Inheritance of firmness in raw cucumber (Cucumis sativus L.) fruit

Summary Inheritance of raw cucumber fruit texture (Magness-Taylor Fruit Pressure Tester firmness) was investigated over a 4-year period from 1971–1974. Results from 2 separate but related experiments suggested that firmness was quantitatively inherited with sufficient additive effects to permit gain from selection. In a selection study within 4 F₂ populations derived from crosses between firm (Chipper and Gy3) and soft (Mincu and Green F) fruit type cultivars, variation among and within F₃ and F₄ families was significant but overall family means were not significantly higher than the high parent in any of the 4 crosses. Narrow sense heritability estimates for fruit texture were 0.80 in the Mincu × Chipper population and 0.77 in the Green F × Chipper, Mincu × Gy3, and Gy3 × Green F crosses. In a separate experiment, generation means analysis was used to assess the mode of gene action in 2 crosses: Green F × Chipper, and Gy3 × Green F. Additive genetic effects accounted for 98.8% and 99.3% of the total genetic variation within each cross, respectively.Scientific Journal Series Paper No. 9794.