Ammonia distribution and excretion in fish

This paper reviews the literature concerning ammonia production, storage and excretion in fish. Ammonia is the end product of protein catabolism and is stored in the body of fish in high concentrations relative to basal excretion rates. Ammonia, if allowed to accumulate, is toxic and is converted to less toxic compounds or excreted. Like other weak acids and bases, ammonia is distributed between tissue compartments in relation to transmembrane pH gradients. NH₃ is generally equilibrated between compartments but NH₄ ⁺ is distributed according to pH. Ammonia is eliminated from the blood upon passage through the gills. The mechanisms of branchial ammonia excretion vary between different species of fish and different environments, and primarily involves NH₃ passive diffusion and NH₄ ⁺/Na⁺ exchange. Water chemistry near the gill surface may also be important to ammonia excretion, but a more accurate measurement of the NH₃ gradient across the gill epithelium is required before a more detailed analysis of NH₃ and NH₄ ⁺ excretion can be made.     

You cannot conserve a species that has not been found: The case of the marine sponge Axinella polypoides in Liguria,Italy

1. Detailed knowledge about the distribution of species in need of protection is required for the management of Marine Protected Areas, a major tool to reduce marine biodiversity loss. Such knowledge is deficient for most marine invertebrates.
2. Axinella polypoides is a marine sponge included on the list of protected species by the Barcelona Convention (1976) and the Bern Convention (1987). This large and erect species has an important ecological role in habitat forming and benthic–pelagic coupling.
3. Bathymetrical, geographical and ecological data over the last 60 years were collated from publications and reports, together with new surveys to assess the distribution and protection status in Liguria of A. polypoides. It identified a more widespread distribution than previously thought, which points at a general need for dedicated investigations on the occurrence of species that require protection.
4. Bathymetrical distribution was trimodal, with peaks corresponding to different geomorphological settings: coastal cliff bases (around 38 m depth), inner shelf shoals (52 m) and rocks amidst coarse sediment on the outer shelf (79 m). Density was significantly greater at the shallowest depths. The species was mostly found in the coralligenous biocoenosis, in association with other characteristic species or forming a monospecific facies.
5. On (sub)vertical cliffs, A. polypoides often exhibited an unusual cane shape, rather than the typical bushy morphology, thus causing confusion with the congeneric A. cannabina, a more southern species. Records of the latter in the Ligurian Sea therefore need confirmation.
6. Only a minority (22.6%) of A. polypoides records were in Marine Protected Areas, the remainder being located in areas with no current environmental protection plans in place. While the occurrence of this species in MPAs remained stable over the decades, the only quantitative historical data available indicated that populations in non-protected areas were declining owing to anthropogenic impacts (fishing and anchoring).

     

Reconstructing the history of the sand tiger shark (Carcharias taurus) in the Mediterranean Sea

1. Sharks are globally exposed to several anthropogenic threats, which, in many cases, have severely reduced their distribution and have impacted populations. In the Mediterranean Sea, because of its long history of exploitation and the relatively short span of scientific monitoring, reconstructing shark baselines is challenging. Many vulnerable species declined in population abundance and geographic distribution before it was possible to adequately track these changes. Consequently, for many of these species, current conservation assessments are now suffering from a severe case of shifting baseline syndrome, whereby their historical occurrence in the area is questioned.
2. The sand tiger shark (Carcharias taurus) is one of these cases. Characterized by high philopatry, restricted home range, and low interchange between populations, its Mediterranean population may have been severely impacted by the high historical fishing pressure in the region before scientific monitoring began.
3. In this study, the history of the abundance and distribution of C. taurus in the Mediterranean Sea was reconstructed through a comprehensive search of occurrence records in the literature and in museum collections. Between 1810 and 2008, 31 occurrence records and 54 publications provided information on the presence of the species in the area. These records were sparse but systematic over time and indicated occurrence hot spots in the south‐western Mediterranean Sea and in the eastern Adriatic Sea.
4. The presence of ten sightings of juveniles from a total of 18 sightings with length information suggested local parturition. Habitat and extinction models indicate that the area has suitable oceanographic conditions for the occurrence of the species and that the species cannot be considered extinct in the Mediterranean Sea. Our study suggests that there is still hope for the recovery of the species and underlines the crucial role of historical investigations to reconstruct the history of large elasmobranchs in the Mediterranean Sea.

     

汤河水库春季浮游生物的群落结构及空间分布

对辽阳市境内的汤河水库春季的浮游生物的群落结构及空间分布进行了调查研究。结果表明,汤河水库春季共有浮游植物42种,平均生物量为14.18 mg/L,以硅藻门最高,占65.85%,隐藻门次之,占17.19%。优势种有硅藻门的针杆藻、桥弯藻等。浮游植物Chl_a含量为4.33μg/L。浮游动物比较贫乏,生物量很低,仅为0.004 mg/L。汤河水库浮游植物生物量的垂直分布无规律性。浮游动物生物量的垂直分布不规律,总的趋势是底层最高。从香农—威纳多样性指数来看,浮游植物多样性指数以上游最大,中游次之,下游最小。浮游动物多样性指数的分布与浮游植物正好相反,下游最大,中游次之,上游最小。根据本次调查结果测得的Carlson营养状态指数判断汤河水库属于中营养型。     

The abundance of juvenile yellowtail (Seriola quinqueradiata) near the Kuroshio: the roles of drifting seaweed and regional hydrography

We assess the effect of drifting seaweed (Sargassum sp.) biomass, geography and hydrography on juvenile yellowtail (Seriola quinqueradiata) abundance variation off the southeast coast of Japan, near the Kuroshio Current. The amount of drifting seaweed mats progressively increased northeastward into the cooler, coastal waters. Frontal structure indexed using a station‐to‐station ΔSST did not explain spatial variation in the seaweed mat distribution, although the western extent of the Kuroshio Current appeared to act as a boundary. Juvenile yellowtail constituted 51–62% of the fish collected in association with drifting seaweed mats in April 1996 and 1997 and 29% in June 1996. The abundance of juvenile yellowtail was positively correlated with seaweed biomass. The geographic distribution of juvenile yellowtail associated with drifting mats varied among sampling periods, being more southwesterly in April and more northeasterly in June. Simple multiple regression models based on seaweed biomass and geographic distribution (latitude) explained between 35% and 43% of the variation in juvenile yellowtail abundance in spring. Associations with spatial and temporal variations in hydrographic conditions did not contribute to explained variation in a meaningful manner. The results presented here indicate that, off the southeast coast of Japan during April, yellowtail juveniles are likely to be most abundant when seaweed biomass is high, occur offshore, and are bounded by the western extent of the Kuroshio Current near the 19–20°C SST isotherm.     

虾池沉积物中3类主要细菌的垂直分布特征

采用平板涂布法和MPN法测定了虾池底质下 0到 30cm深度范围内 3类主要细菌类群的垂直分布情况。结果表明 ,底泥中细菌主要集中于 0到 5cm的表层范围内 ,随深度增加 ,数量急剧减少 ,至 30cm深处所测到菌量已很少。底泥中的总菌量随养殖时间推移 ,逐渐增加 ,到养殖中后期 ,表层菌量增加至 10 6CFU/g ,表层以下 10～2 0cm的总异养菌量和硝酸盐还原菌数量也增加至 10 5CFU/ g以上。弧菌仍集中于表层。细菌的垂直分布主要受各层有机物和溶解氧含量的影响     

Machine learning highlights the importance of primary and secondary production in determining habitat for marine fish and macroinvertebrates

1. Species distribution models for marine organisms are increasingly used for a range of applications, including spatial planning, conservation, and fisheries management. These models have been constructed using a variety of mathematical forms and drawing on both physical and biological independent variables; however, what might be called first-generation models have mainly followed the form of linear models, or smoothing splines, informed by data collected in the context of fish surveys.
2. The performance of different classes of variables were tested in a series of species occurrence models built with machine learning methods, specifically evaluating the potential contribution of lower trophic level data. Random forest models were fitted based on the classification of the absence/presence for fish and macroinvertebrates surveyed on the US Northeast Continental Shelf.
3. The potential variables included physical, primary production, secondary production, and terrain variables. For accepted model fits, six variable importance measures were computed, which collectively showed that physical and secondary production variables make the greatest contribution across all models. In contrast, terrain variables made the least contribution to these models.
4. Multivariable analyses that account for all performance measures reinforce the role of water depth and temperature in defining species presence and absence; however, chlorophyll concentration and some specific zooplankton taxa, such as Metridia lucens and Paracalanus parvus, also make important contributions with strong seasonal variations.
5. Our results suggest that lower trophic level variables, if available, are valuable in the creation of species distribution models for marine organisms.