农民用水协会在基层灌区管理中的作用及存在的问题

对近年昌吉州灌区协会发挥的作用进行了分析,并就目前存在的主要问题进行了讨论,以期促进基层灌区的管理。     

Emerging issues in genomic selection

Genomic selection (GS) is now practiced successfully across many species. However, many questions remain, such as long-term effects, estimations of genomic parameters, robustness of genome-wide association study (GWAS) with small and large datasets, and stability of genomic predictions. This study summarizes presentations from the authors at the 2020 American Society of Animal Science (ASAS) symposium. The focus of many studies until now is on linkage disequilibrium between two loci. Ignoring higher-level equilibrium may lead to phantom dominance and epistasis. The Bulmer effect leads to a reduction of the additive variance; however, the selection for increased recombination rate can release anew genetic variance. With genomic information, estimates of genetic parameters may be biased by genomic preselection, but costs of estimation can increase drastically due to the dense form of the genomic information. To make the computation of estimates feasible, genotypes could be retained only for the most important animals, and methods of estimation should use algorithms that can recognize dense blocks in sparse matrices. GWASs using small genomic datasets frequently find many marker-trait associations, whereas studies using much bigger datasets find only a few. Most of the current tools use very simple models for GWAS, possibly causing artifacts. These models are adequate for large datasets where pseudo-phenotypes such as deregressed proofs indirectly account for important effects for traits of interest. Artifacts arising in GWAS with small datasets can be minimized by using data from all animals (whether genotyped or not), realistic models, and methods that account for population structure. Recent developments permit the computation of P-values from genomic best linear unbiased prediction (GBLUP), where models can be arbitrarily complex but restricted to genotyped animals only, and single-step GBLUP that also uses phenotypes from ungenotyped animals. Stability was an important part of nongenomic evaluations, where genetic predictions were stable in the absence of new data even with low prediction accuracies. Unfortunately, genomic evaluations for such animals change because all animals with genotypes are connected. A top-ranked animal can easily drop in the next evaluation, causing a crisis of confidence in genomic evaluations. While correlations between consecutive genomic evaluations are high, outliers can have differences as high as 1 SD. A solution to fluctuating genomic evaluations is to base selection decisions on groups of animals. Although many issues in GS have been solved, many new issues that require additional research continue to surface.     

戴瑞奶绵羊产奶性状的全基因组关联分析

旨在通过对奶绵羊产奶性状的全基因组关联分析（GWAS）,寻找和定位与奶绵羊产奶性状相关的遗传标记和功能基因。本研究以135只戴瑞奶绵羊为试验材料,基于全基因组重测序技术,通过SAMTOOLS进行单核苷酸多态性（SNP）检测,使用PLINK v1.90进行质控,利用GEMMA v 0.98.1的混合线性模型对质控结果进行奶绵羊产奶性状相关的全基因组关联分析。结果表明,有1个SNP与泌乳后90天日均产奶量在全基因组范围内显著相关,8个SNPs达到潜在显著关联,相关的候选基因包括TRNAQ-CUG-2、LOC114117240、ACADL、MYL1、CHD6、SLCO3A1;有2个SNPs与150天日均产奶量达潜在显著关联,相关的候选基因包括PRMT6、RNF180;有2个SNPs与泌乳周期达潜在显著关联,相关的候选基因包括PRMT6、TRNAW-CCA-68、TRNAS-GGA-61。进一步基因功能分析推测,ACADL、SLCO3A1可能是影响奶绵羊产奶性状的候选基因。本研究为奶绵羊产奶性状的分子机制解析提供了一定的基础,为我国奶绵羊新品种培育提供了一定的理论参考。     

东佛里生羊MSTN基因多态性及其与生长性状的关联分析

试验旨在研究肌肉生长抑制素(myostatin,MSTN)基因多态性及其对东佛里生羊生长性状的影响。从324只东佛里生羊全血中提取DNA,对MSTN基因外显子序列和非翻译区(untranslated region,UTR)序列进行PCR扩增,采用一代测序技术鉴定单核苷酸多态性(single nucleotide polymorphism,SNP)位点,分析不同位点的遗传多态性,并将不同基因型与东佛里生羊的生长性状进行关联分析。结果显示,在东佛里生羊MSTN基因外显子中未检测到突变;在3'-UTR区的272 bp处存在G→A单碱基突变,该位点只检测到AG和AA基因型,且AA基因型频率高于AG基因型;在5'-UTR区的176 bp处存在C→A突变,该位点只检测到CC和AC基因型,且CC基因型频率高于AC基因型。遗传多样性参数分析结果表明,东佛里生羊群体MSTN基因3'-UTR-272和5'-UTR-176位点的纯合度分别为0.827和0.887,杂合度分别为0.173和0.113,2个位点的多态性均较低(PIC<0.25),其群体基因型分布均符合哈代-温伯格平衡(P>0.05)。关联分析发现,3'-UTR-272位点AG基因型体斜长显著高于AA基因型(P<0.05),5'-UTR-176位点CC基因型胸围显著高于AC基因型(P<0.05),其余指标均无显著差异(P>0.05)。综上,东佛里生羊MSTN基因3'-UTR和5'-UTR突变位点可作为其目标性状选育的分子标记。     

松辽黑猪OAS1基因多态性及其与繁殖性状的关联分析

为探究寡腺苷酸合成酶1（oligoadenylate synthase 1,OAS1）基因多态性与松辽黑猪繁殖性状的关联性,试验选取130头松辽黑猪母猪为研究对象,利用Sanger直接测序法测序查找OAS1基因外显子1~8的SNP位点,使用SPSS 19.0软件分析OAS1基因SNP位点与松辽黑猪繁殖性状的关联性。结果显示,在松辽黑猪OAS1基因外显子2、3和6上共检测到33个突变位点;其中在外显子2的110 bp处存在1个SNP位点（G110C）,存在3种基因型：GG、GC和CC;在外显子3的176 bp处存在1个SNP位点（C176T）,存在3种基因型：CC、CT和TT;在外显子6的145 bp处存在1个SNP位点（C145T）,存在3种基因型：CC、CA和AA;在166 bp处存在1个SNP位点（G166A）,存在3种基因型：GG、GA和AA;在206 bp处存在1个SNP位点（A206G）,存在3种基因型：AA、AG和GG。卡方适合性检验结果显示,松辽黑猪OAS1基因G110C突变位点符合Hardy-Weinberg平衡状态,C176T、C145A、G166A和G206A位点均偏离Hardy-Weinberg平衡状态。群体遗传参数分析结果显示,各SNPs位点遗传杂合度均位于中等水平,为中度多态（0.25<PIC<0.5）。关联分析结果发现,G110C位点GC基因型个体总产仔数、产活仔数和断奶仔猪数均显著高于GG基因型个体（P<0.05）;C176T位点CT基因型个体断奶仔猪数显著高于CC基因型个体（P<0.05）;C145T位点CC基因型个体总产仔数和产活仔数均显著高于AA基因型个体（P<0.05）;G166A位点GA基因型个体断奶仔猪数显著高于GG基因型个体（P<0.05）;A206G位点GG基因型个体总产仔数和产活仔数显著高于AA基因型个体（P<0.05）。结果表明,OAS1基因外显子区存在突变位点,对松辽黑猪部分繁殖性状有显著性影响。     

Spatial Distribution of Surface Soil Acidity,Electrical Conductivity,Soil Organic Carbon Content and Exchangeable Potassium,Calcium and Magnesium in Some Cropped Acid Soils of India

Land degradation is a global problem. Best management of degraded land can be done by evaluating the spatial variability of soil properties including chemical properties of degraded land and mapping such variations. Since, a significant portion of arable land in India is chemically degraded due to soil acidity; the present study was conducted to study the spatial variability of soil acidity (pH), electrical conductivity (EC), soil organic carbon (OC) content, exchangeable potassium (K⁺), calcium (Ca²⁺) and magnesium (Mg²⁺) contents in some cropped acid soils of India. A total of four hundred (one hundred from each series) representative surface (0–0.15 m depth) soil samples were collected from arable soils representing four soil series namely Hariharapur, Debatoli, Rajpora and Neeleswaram situated in Orissa, Jharkhand, Himachal Pradesh and Kerala states of India, respectively, and were analyzed. Soil acidity (pH between 3.90 and 6.45) showed a low variability, in contrast to other soil properties, which showed moderate variability. The coefficients of variation varied from 32.4 to 74.3, 31.2 to 50.9, 45.6 to 100, 71.9 to 93.0 and 59.0 to 79.8% for EC (mean between 0.05 and 0.09 dS m⁻¹), OC (mean between 0.29 to 1.86%), exchangeable K⁺ (mean between 39.1 and 77.7 mg kg⁻¹), Ca²⁺ (mean between 148 and 293 mg kg⁻¹) and Mg²⁺ (mean between 111 and 191 mg kg⁻¹), respectively. Soil pH and OC content were positively and significantly correlated with exchangeable K⁺, Ca²⁺ and Mg²⁺ content. Geostatistical analysis revealed that the best fit models were gaussian, exponential and spherical for different soil properties with moderate to strong spatial dependency. Copyright © 2014 John Wiley & Sons, Ltd.     

我国松毛虫发生率的空间分布格局及其驱动因子

了解我国松毛虫发生的空间分布格局及其驱动因子, 对松毛虫暴发的预防?控制和治理具有重要意义?本研究基于我国各行政区2004年-2012年间每年松毛虫发生面积及其寄主植物面积, 使用一般线性模型分析气候因子是否以及如何驱动我国松毛虫发生的空间分布格局?结果表明:在全国尺度上, 最暖季降水量是松毛虫发生的主要气候驱动因子, 松毛虫平均发生率与最暖季降水量显著正相关?在最暖季降水量的作用下, 我国松毛虫的发生呈现明显的空间分布格局, 最暖季降水量较高的南方和北方部分地区松毛虫发生率较高, 而降水量较低的西北和青藏地区松毛虫发生率较低?我们的研究结果可为松毛虫暴发的预防和管理工作提供指导?     

Unraveling the morphological patterns of a subantarctic eelpout: a geometric morphometric approach

Phenotypic variation in organisms depends on the genotype and the environmental constraints of the habitat that they exploit. Therefore, for marine species inhabiting contrasting aquatic conditions, it is expected to find covariation between the shape and its spatial distribution. We studied the morphology of the head and cephalic sensory canals of the eelpout Austrolycus depressiceps (4.5–22.5 cm TL) across its latitudinal distribution in South Pacific (45°S–55°S). Geometric morphometric analyses show that the shape varied from individuals with larger snout and an extended suborbital canal to individuals with shorter snouts and frontally compressed suborbital canal. There was size variation across the sampled populations, but that size does not have a clear latitudinal gradient. Only 8% of the shape variation relates to this size variation (allometry), represented by a decrease in the relative size of the eye, and a depression of the posterior margin of the head. There were spatial differences in the shape of the head, but these differences were probably caused by allometric effects. Additionally, 2 of the canals of the cephalic lateralis pores and the head shape showed modularity in its development. This study shows that the morphology of marine fish with a shallow distribution varies across distances of hundreds of kilometers (i.e., phenotypic modulation).     

Research on Mapping Method of Customer Need Information in Product Family Improvement

Aiming at ensuring that product family improvement is based on customer needs while taking full advantage of enterprise history database, firstly, customer needs in the product family improvement are expressed. Then a method of realizing the mapping of customer needs to functional requirements is presented, which is based on quality function development and association rule mining. Finally, an example illustrates the good application of the method.     

Design and Implement of WebGIS Based on SVG

SVG based on XML is a kind of language describing 2D vector graphics.It is usability and applicability to set up WebGIS.The paper puts forward a system structure of WebGIS based on SVG,which has been applied to campus electronic map system of Chongqing University.It has been proved the method is feasibility and practicability.The paper sets forth some key techniques of implement of the system in detail: coding method of organizing SVG spatial data;generation of SVG electronic map;storage of SVG spatial data and implement of client.