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Use of genomic recursions and algorithm for proven and young animals for single‐step genomic BLUP analyses – a simulation study 下载免费PDF全文
B.O. Fragomeni D.A.L. Lourenco S. Tsuruta Y. Masuda I. Aguilar I. Misztal 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2015,132(5):340-345
The purpose of this study was to examine accuracy of genomic selection via single‐step genomic BLUP (ssGBLUP) when the direct inverse of the genomic relationship matrix ( G ) is replaced by an approximation of G ?1 based on recursions for young genotyped animals conditioned on a subset of proven animals, termed algorithm for proven and young animals (APY). With the efficient implementation, this algorithm has a cubic cost with proven animals and linear with young animals. Ten duplicate data sets mimicking a dairy cattle population were simulated. In a first scenario, genomic information for 20k genotyped bulls, divided in 7k proven and 13k young bulls, was generated for each replicate. In a second scenario, 5k genotyped cows with phenotypes were included in the analysis as young animals. Accuracies (average for the 10 replicates) in regular EBV were 0.72 and 0.34 for proven and young animals, respectively. When genomic information was included, they increased to 0.75 and 0.50. No differences between genomic EBV (GEBV) obtained with the regular G ?1 and the approximated G ?1 via the recursive method were observed. In the second scenario, accuracies in GEBV (0.76, 0.51 and 0.59 for proven bulls, young males and young females, respectively) were also higher than those in EBV (0.72, 0.35 and 0.49). Again, no differences between GEBV with regular G ?1 and with recursions were observed. With the recursive algorithm, the number of iterations to achieve convergence was reduced from 227 to 206 in the first scenario and from 232 to 209 in the second scenario. Cows can be treated as young animals in APY without reducing the accuracy. The proposed algorithm can be implemented to reduce computing costs and to overcome current limitations on the number of genotyped animals in the ssGBLUP method. 相似文献
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略论我国草地资源综合评价的基本内容 总被引:1,自引:0,他引:1
草地资源综合评价是以草地自然植被,生态环境条件,草地资源经济和社会因素等为特性的草地利用、管理、保护等综合鉴定,在实践中草地资源综合评价与农牧业生产紧密联系的,这对合理利用草地,保护草地环境起到了重大的作用,它推动农、牧、林业生产的持续发展。到目前为止,草地资源综合评价工作,无论在理论上和方法上还缺乏系统性的论述。本文着重从三个方面的问题略加阐述,以便将草地资源评价的研究推向一个高层次,促进草地科学更全面、更系统地向前发展,进一步丰富草地学内容 相似文献
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Rochelle Alipio Flores Binh Thanh Nguyen Paula Leona Tayamen Cammayo Cherry Pambid Fernandez-Colorado Anindita Roy Suk Kim Woohyun Kim Wongi Min 《Journal of veterinary science (Suw?n-si, Korea)》2022,23(6)
Three parameters, body weight gain (BWG), intestinal lesion score (LS) and fecal oocyst shedding, were compared in broilers infected with major parasitic species; Eimeria acervulina, E. maxima, and E. tenella. First, two- and three-week-old chickens with Eimeria infection showed LS of approximately 3, but two-week-old chickens were more correlated with BWG. Second, significant differences in BWG were observed between male and female broilers challenged with Eimeria. Finally, E. maxima-infected broilers among three Eimeria species showed a higher relationship between BWG and LS, suggesting three considerations such as genders, age and Eimeria species for Eimeria experiments. 相似文献
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Spatial distribution of weeds in arable crops: are current sampling and analytical methods appropriate? 总被引:5,自引:0,他引:5
This paper reviews the literature concerning the spatial distribution of weeds; highlighting the limitations of our current sampling and analytical methodologies, and suggesting how these inadequacies can be addressed. Most research studies have used discrete sampling, i.e. weeds are counted within a quadrat, on a grid basis. Few have mapped weeds at a whole-field scale, either with a resolution appropriate to spraying operations or key ecological processes. Statistical analyses used to describe the data can be divided into two main types, spatially implicit (also at the scale of the sampling unit) or spatially explicit, in which the location of individuals is included in the analyses. Spatially implicit methods can be strongly affected by quadrat size and mean density and are of doubtful benefit. More attention is required to address sampling resolution issues for spatially explicit methods. Our understanding of the formation and dynamics of spatial pattern, as well as predicting the consequences of site-specific management, can be improved with models. Unfortunately, most models consider only newly expanding patches and appear incapable of predicting spatial distributions when an area has been fully invaded. More detailed biological information is required if models are to become more realistic and informative. We also need to ensure that we understand the spatial processes in the context of the whole field environment, to optimize the success of site-specific weed management in the longer term. 相似文献
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采用经济学评价方法,通过对加压滴灌棉花和小麦生产和管理运行成本、单位面积产值、纯收益和成本收益率等进行全面的分析评价,并与常规地面灌棉花和小麦进行对比分析,为加压滴灌在粮食作物上的进一步扩大推广提供依据.结果表明.加压滴灌棉花纯效益每公顷为10859.1元,成本纯收益率为64.82%,与常规灌溉棉花生产相比,成本纯收益... 相似文献
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黄土丘陵区四种人工灌木植被生态经济效益分析 总被引:3,自引:1,他引:3
以定西地区常见人工灌木树种柠条、沙棘、红柳、紫穗槐为研究对象,利用生态经济学原理提出其生态经济效益评价的指标体系和评价方法,通过农村社会调查和市场分析并结合影子价格法、机会成本法和影子工程法等方法.分别计算四种灌木的生态经济效益。综合效益分析表明,四种灌木树种生态效益大小顺序为沙棘>红柳>柠条>紫穗槐,经济效益大小顺序为紫穗槐>沙棘>红柳>柠条。从总净收益来看,四种灌木生态经济效益总和大小顺序为沙棘>紫穗槐>红柳>柠条。表明沙棘是该区优良的植被恢复灌木树种,适宜在定西地区大面积推广。 相似文献