Between-founder heterogeneity in inbreeding depression for production in Jersey cows

Severity of inbreeding depression depends on the hidden (i.e., recessive) genetic load carried by a population. If the load is distributed unevenly among founder genomes, or founder-lines were exposed to variable amounts of selection, descendants from different founders may be differentially affected by inbreeding. Between-founder heterogeneity in inbreeding depression for production traits and somatic cell score in milk (SCS) was studied using records from 59,788 Jersey cows. Inbreeding coefficients (F) were partitioned into components due to four founders, plus a remainder. A two-stage statistical analysis was performed. First, empirical best linear unbiased predictions (EBLUP) of residuals for milk, fat and protein yield, and for SCS, were computed using linear models including fixed effects of herd–year–season, age at calving and days in milk, and random additive genetic effects of individual cows. Second, models with total and partial inbreeding coefficients as predictor variables were fitted to EBLUP residuals, for each trait. Tests of differences between slopes indicated that regressions of milk, fat and protein yield on partial inbreeding coefficients were heterogeneous; SCS did not exhibit inbreeding depression. Hence, alleles contributing to inbreeding depression for production in this Jersey population seem to be associated with specific founders. This indicates that a homogeneous effect of inbreeding on production may be an incorrect statistical specification in genetic evaluation models that attempt to account for inbreeding depression. Furthermore, the observed variability between effects of partial inbreeding due to different founders implies that inbreeding effects on yield traits may be due to alleles with major effects.     

Phenotypic variability in different strains of Pseudomonas syringae subsp. savastanoi isolated from different hosts

One hundred and sixty strains of Pseudomonas syringae subsp. savastanoi from Olea europaea, Olea europaea var. sylvestris, Nerium oleander, Fraxinus angustifolia and Retama sphaerocarpa, and four type strains of other pathovars were studied, investigating 102 phenotypic traits, among which we include biochemical characteristics, assimilation of different carbon sources, sensitivity or resistance to antibiotics and indoleacetic acid (IAA) production. Results were analysed with an affinity dendrogram via the Jaccard coefficient. They indicate an influence of environmental factors on the formation of the 15 phenons obtained, since isolated (knot) strains from the same species but different geographical areas are segregated. Segregation, also detected in strains from different hosts within the same area, added to the pathogenicity test helps to characterise these strains as different pathovars.     

Assessment of diffusive phosphate supply in soils by microdialysis

Standard procedures to assess P availability in soils are based on batch experiments with various extractants. However, in most soils P nutrition is less limited by bulk stocks but by strong adsorption and transport limitation. The basic principle of root‐phosphate uptake is to strip phosphate locally from the solid phase by forming a radial depletion zone in the soil solution, optionally enhanced by release of mobilizing substances. Microdialysis (MD), a well‐established method in pharmacokinetics, is capable to mimic important characteristics of P root uptake. The sampling is by diffusional exchange through a semipermeable membrane covering the probes with their sub‐mm tubular structure. Additionally, the direct environment of the probe can be chemically modified by adding, e.g ., carboxylates to the perfusate. This study is the first approach to test the applicability of MD in assessing plant available phosphate in soils and to develop a framework for its appropriate use.We used MD in stirred solutions to quantify the effect of pumping rate, concomitant ions, and pH value on phosphate recovery. Furthermore, we measured phosphate yield of top‐soil material from a beech forest, a non‐fertilized grassland, and from a fertilized corn field. Three perfusates have been used based on a 1 mM KNO₃ solution: pure (1), with 0.1 mM citric acid (2), and with 1 mM citric acid (3). Additionally, a radial diffusion model has been parametrized for the stirred solutions and the beech forest soil.Results from the tests in stirred solutions were in good agreement with reported observations obtained for other ionic species. This shows the principal suitability of the experimental setup for phosphate tests. We observed a significant dependency of phosphate uptake into the MD probes on dialysate pumping rate and on ionic strength of the outside solution. In the soils, we observed uptake rates of the probes between 1.5 × 10⁻¹⁵ and 6.7 × 10⁻¹⁴ mol s⁻¹ cm⁻¹ in case of no citrate addition. Surprisingly, median uptake rates were mostly independent of the bulk soil stocks, but the P‐fertilized soil revealed a strong tailing towards higher values. This indicates the occurrence of hot P spots in soils. Citrate addition increased P yields only in the higher concentration but not in the forest soil. The order of magnitude of MD uptake rates from the soil samples matched root‐length related uptake rates from other studies. The micro‐radial citrate release in MD reflects the processes controlling phosphate mobilization in the rhizosphere better than measurements based on “flooding” of soil samples with citric acid in batch experiments. Important challenges in MD with phosphate are small volumes of dialysate with extremely low concentrations and a high variability of results due to soil heterogeneity and between‐probe variability. We conclude that MD is a promising tool to complement existing P‐analytical procedures, especially when spatial aspects or the release of mobilizing substances are in focus.     

Growth modelling including size heterogeneity: Application to the intensive culture of white shrimp (P. vannamei) in freshwater

This article models the growth of a population in aquaculture, including the phenomenon of size heterogeneity. Experimental observations of six initial densities (90, 130, 180, 230, 280 and 330 shrimps m⁻²) in an intensive culture of Penaeus vannamei in freshwater were used to fit a growth model. For this, three mathematical functions were analysed (Gompertz, von Bertalanffy and Pütter), which were modified in order to include the effect of initial density. Two models were constructed, one assuming the hypothesis of homogeneous individual growth and the other including size-heterogeneity throughout the culture cycle. For the second case, a stabilisation time was evaluated which defines the future heterogeneity of the cohort. In each initial density, the stabilisation phase was reached at approximately 2 g. However, the time taken for this phase to start increased with increasing initial culture density. The modified von Bertalannfy function was the most effective of the three equations in predicting growth. The weight predictions, assuming homogeneity and variability of sizes, presented low Percentage Root Mean Square Errors (PRMSE). However, the inclusion of size variability in the fit produced better statistical results than when they were not included (PRMSE decreased from 16% to 12%). This confirms the importance of taking into account size heterogeneity at an intensive level. Particularly at the technical level when the aquaculture producer is required to make stocking and harvest plans.     

Tree identity surpasses tree diversity in affecting the community structure of oribatid mites (Oribatida) of deciduous temperate forests

The role of tree diversity and identity as determinants of soil animal community structure is little understood. In a mature deciduous forest dominated by beech we identified clusters of one, two and three tree species of beech, ash and lime allowing to investigate the role of tree species diversity and identity on the density and community structure of oribatid mites. To relate oribatid mite community structure to environmental factors we measured leaf litter input, fine root biomass, mass of organic layers, topsoil pH and C and N content. We expected oribatid mite density to increase with increasing tree diversity, but we expected the effects of tree species identity to override effects of tree diversity. Further, we hypothesized the density of oribatid mites to be reduced by the presence of beech but increased by the presence of lime and ash. As expected tree diversity little affected oribatid mite communities, whereas tree species identity strongly altered density and community structure of oribatid mites. However, in contrast to our expectations the density of oribatid mites was highest in presence of beech indicating that many oribatid mite species benefit from the presence of recalcitrant litter forming thick organic layers. Especially Oppioidea benefited from the presence of beech presumably due to an increased availability of food resources such as fungi and nematodes. Lower density of oribatid mites in monospecific clusters of lime and ash suggests that oribatid mites did not benefit from high quality litter of these species. Notably, large and strongly sclerotized oribatid mite species, such as Steganacarus magnus and Chamobates voigtsi, benefited from the presence of ash and lime. Presumably, these large species better resist harsh microclimatic conditions in shallow organic layers.     

不同破坏方式对固定沙丘植被的影响

通过对吉林省前郭县乌兰图嘎林场固定沙丘植被试验区采取限制放牧与过度放牧的对比调查，结果得出，控制放牧有利于固定沙丘植被的恢复，可有效地提高草牧场植被的多样性和异质性；而过度放牧通常是吉林省西部草牧场退化的最重要原因。     

Differential overstory leaf flushing contributes to the formation of a patchy understory

Understory individuals were found to form patches in a 100-year-old deciduous broad-leaved forest. The closed forest canopy was uniform, and so the light conditions at various locations across the forest floor differed little after the leaf flush of the overstory. To explain the distribution pattern in the understory, a hypothesis was proposed: in spring, the forest floor is divided into patches according to the timing of leaf flush of the overstory individuals, and the light conditions are more favorable for understory plants under the crowns of trees with later-flushing leaves. In the plot, three groups of early, intermediate, and late, were recognized in the overstory concerning the timing of leaf flush. As for the start of leaf flush, a difference of 31.6 days was recognized among tree species, and for the end of leaf flush, a difference of 40.3 days. In the spring of 1998, the relative photosynthetic-photon-flux density under an intensively studiedCastanea crenata tree (late-flushing species) usually showed higher values than that under a similarly studiedAcer mono tree (early-flushing species). Analysis of the spatial-distribution pattern using Morisita’s1δ index revealed that the understory community had an aggregated distribution. In the overstory, the late- and the intermediate-flushing-species groups showed aggregated distributions, while the early-flushing-species group showed random distribution. Spatial correlation between the understory and the overstory was analyzed by using Morisita’sRδ index. The distribution of whole understory community spatially co-occurred with that of the late-flushing-species group of the overstory. In contrast, the understory community was less developed below the members of the early-flushing-species group of the overstory. We consider that the data presented here support our hypothesis, and we suggest that the growth and survival of understory individuals were promoted in the places receiving light for long periods in spring.     

Branch mortality and potential litterfall from Douglas-fir trees in stands of varying density

Forest floor characteristics influence nutrient cycling and energy flow properties of forest ecosystems, and determine quality of habitat for many forest plants and animals. Differential crown recession and crown development among stands of differing density suggest that an opportunity may exist to control the input of fine woody litter into the system by manipulating stand density. The objective was to measure the rate of branch mortality among stands of differing density and to estimate the range in total per hectare necromass inputs. Although litter traps are reliable for estimating per hectare rates of litterfall, branch mortality dating on sectioned stems uniquely allows assessment of several other litterfall components: (1) individual tree contributions to total litterfall; (2) the amount of branch material released by mortality, regardless of whether the branches are shed to the forest floor; (3) the distribution of basal diameters characterizing the litterfall from a given tree and stand. Twenty-four trees were felled and sectioned on permanent plots that were part of a silvicultural study of stand density regimes in Douglas-fir (Pseudotsuga menziesii (Mirbel) Franco.). Whorl branches were dissected out of bole sections to determine the dates of mortality, and a branch biomass equation was applied to estimate potential rate of litterfall. Periodic annual rates were expressed in four ways: (1) number of branches per tree; (2) mass of branches per tree; (3) mass of branches per unit of crown projection area; (4) mass of branches per hectare. For the growth periods investigated, larger trees and trees growing on denser plots tended to release a greater necromass through branch mortality. Average branch basal diameter generally decreased with increasing stand density. Annual branch mortality ranged from 33 to 430 g m⁻² crown projection area for individual trees, and from 236 to 1035 kg ha⁻¹ for individual plots. These rates approached the low end of the range of previously published fine litterfall rates for Douglas-fir. Rates on these plots were relatively low owing to the temporary delay in crown recession imposed by artificial thinning. A conceptual model of branch litter dynamics is presented to depict consistencies with crown development among stands managed under different density regimes.     

基于GIS的云南高黎贡山南段景观变化特征分析

以高黎贡山1974年MSS遥感影像、1987和1997年TM遥感影像和2006年IRS遥感影像以及地形图等相关资料为基础数据,在GIS技术支持下,结合景观生态学原理,从景观格局、森林景观动态变化特征方面对云南高黎贡山南段进行了研究。结果显示,研究区景观的破碎程度随时间推移而增大,景观异质性程度降低,土地利用逐渐趋于单一化,土地的开发程度增加,人类对景观的干扰程度加强;各类森林景观交错镶嵌,分布活跃且形状复杂,分化程度高,具有较高的森林景观异质性和丰富的景观多样性。