A perspective on the measurement of time in plant disease epidemiology

The growth and development of plant pathogens and their hosts generally respond strongly to the temperature of their environment. However, most studies of plant pathology record pathogen/host measurements against physical time (e.g. hours or days) rather than thermal time (e.g. degree-days or degree-hours). This confounds the comparison of epidemiological measurements across experiments and limits the value of the scientific literature.     

The effect of sowing date, stale seedbed, row width and mechanical weed control on weeds and yields of organic winter wheat

Three field experiments were carried out in organically grown winter wheat in Denmark. The treatments were sowing time (normal or late sowing) and false seedbed, row width (12 and 24 cm) and weed control method [untreated; mechanical weed control (weed harrowing at 12 cm supplemented with inter‐row hoeing at 24 cm); and herbicide weed control]. Weed biomass in midsummer was greatest on plots sown at the normal sowing time (compared with delayed sowing) and was reduced by mechanical or chemical weed control (compared with untreated plots). Row width alone had no influence on weed biomass, but in the experiment with high weed pressure, the more intensive mechanical weed control used at a row width of 24 cm reduced weed biomass. Normal sowing time tended to give higher yields, but this was only statistically significant in one of the three experiments. Wide rows gave a yield decrease in the experiment with low weed pressure. The effect of weed control on yield was dependent on the weed pressure. At low weed pressure, mechanical weed control caused a yield decrease compared with untreated or herbicide treated. At intermediate weed levels there were no differences, whereas at high weed pressure, mechanical weed control and herbicide treatment caused a yield increase compared with untreated. False seedbeds were shown to contribute to a decrease in the soil seed reserve.     

Genetic risk factors for osteochondrosis in various horse breeds

Osteochondrosis (OC) is an injury to cartilage canals with a following necrosis in the growth cartilage, from there it can develop to osteochondrosis dissecans (OCD). Due to its high impact in the equine industry, new insights into predisposing factors and potential high‐risk genetic variants are warranted. This article reviews advancements in quantitative and molecular genetics in refining estimation of genetic parameters and identifying predisposing genetic loci. Heritabilities were highest for hock OC with estimates at 0.29–0.46 in Hanoverian warmblood and Norwegian trotters, whereas in Thoroughbreds only very low genetic variation seemed to be present in hock OC lesions. Whole genome scans using the Illumina Equine SNP50 or SNP70 Beadchip were performed in Thoroughbred, Standardbred, French and Norwegian trotter, Hanoverian and Dutch warmblood. Validation studies in Spanish Purebred and Hanoverian warmblood horses corroborated OC risk loci on ECA 3, 14, 27 and 29. Particularly, a strong association with hock‐OCD was found for a single nucleotide polymorphism (SNP) on horse chromosome (ECA) 3 upstream to the LCORL gene. Gene expression and microRNA analyses may be helpful to understand pathophysiological processes in equine OC and to connect OCD‐associated genomic regions with potential candidate genes. Furthermore progress in elucidating the underlying genetic variants and pathophysiological changes in OC may be expected from whole genome DNA and RNA next‐generation sequencing studies.     

Heritability and genetic correlations between rumination time and production traits in Holstein dairy cows during different lactation phases

So far, rumination has been used as a proxy for monitoring dairy cow health at farm level. However, investigating its genetic aspects as well as its correlation with other important productive traits may turn this management tool into a new informative selection criterion. However, scientific evidences on genetic correlation among rumination time (RT) and milk production and milk composition are still scarce. Therefore, the objective of this study was to estimate the heritability of RT across three lactation phases and its genetic correlation with milk production, milk composition and somatic cell count (SCC). Results of our study showed that heritability for RT was 0.34 and was constant across lactation. The mean genetic correlations between RT and milk production and composition traits were 0.07 (milk production), ?0.07 (protein yield), ?0.31 (fat yield), and ?0.32 (fat/protein ratio). The mean genetic correlation between RT and the SCC was 0.05.     

Bovine foetal sex determination—Different DNA extraction and amplification approaches for efficient livestock production

Foetal sex determination using polymerase chain reaction (PCR) in mammals is based on the amplification of gender‐specific foetal DNA sequences circulating in maternal blood. The bovine synepitheliochorial placenta does not allow a direct contact between the trophoblast and the maternal blood, resulting in difficult passage of foetal DNA and, consequently, its very small amounts in maternal bloodstream. Circulating cell‐free foetal DNA (ccffDNA) encompasses short nucleotide fragments (300–600 bp) in maternal circulation. The aim of this study was to assess this non‐invasive method in accurate prenatal sexing in early and late gestational periods in comparison with ultrasound diagnostics. As various DNA isolation and amplification methods were tested, their success in obtaining reliable results was evaluated. Two groups were tested, each consisting of 20 pregnant cows. Blood of a bull and a non‐pregnant heifer was the controls. Extraction of foetal DNA was accomplished by three different methods: using tubes with silicone membranes, a single‐tube extraction without silicone membranes and phenol–chloroform extraction. Following each extraction method, foetal DNA was amplified using PCR and real‐time PCR with both bAML and TSPY primers in a separate reaction. Positive results were obtained only after amplification of foetal DNA extracted with a single‐tube extraction kit. In comparison with ultrasound examination results and foetal gender recorded at birth, the sensitivity of the PCR test was 90% in Group I, but the technique failed to detect male foetuses in Group II. The real‐time PCR test sensitivity in Group I was 90% and in Group II 91.6%.     

Endocannabinoids as endometrial inflammatory markers in lactating Holstein cows

The objective of this study was to consider endocannabinoid system as inflammatory markers in bovine endometrium to better understand the role of this system in regulating many of the functions that are related to inflammatory condition. At day 26 post‐partum, fourteen cows were divided into two groups depending on the inflammatory condition: 1‐ subclinical endometritis (n = 7, with purulent or mucopurulent uterine discharge detectable in the vagina) and 2‐ healthy (n = 7, No (muco)) purulent discharge. Blood samples were collected at 26 and 30 days relative to calving to determine plasma tumour necrosis factor (TNF) and lipopolysaccharide‐binding protein (LBP) concentrations; moreover, uterine biopsy was carried out on day 26 post‐partum to measure mRNA abundance of TNF, interleukin‐1B (IL1B), interleukin‐6 (IL‐6), C‐X‐C motif chemokine ligand 8 (CXCL8), endocannabinoid receptor (CNR2), N‐acyl phosphatidylethanolamine phospholipase D (NAPEPLD), fatty acid amide hydrolase (FAAH), N‐acylethanolamine acid amidase (NAAA) and monoglyceride lipase (MGLL) by real‐time PCR. Results showed mean plasma concentrations of TNF and LBP were lower in healthy cows compared to subclinical endometritis cows (p < .05). Relative mRNA expression for NAAA and FAAH was decreased (p < .05), and relative mRNA expression for CNR2 and NAPEPLD increased in cows with subclinical endometritis compared to healthy cows. In conclusion, relative mRNA expression of TNF, IL1B and CXCL8 and plasma concentration of LBP increased during inflammatory condition along with decreased endocannabinoids hydrolyzing enzyme (NAAA and FAAH), increased enzymes that synthesize endocannabinoids (NAPEPLD) and relative gene expression of the endocannabinoid receptor; together, these contribute to increased endocannabinoids levels during inflammation. Overall, we provide evidence that endocannabinoid system is altered in endometrium tissue during inflammation through increased mRNA expression of CNR2 and synthesis enzyme and decreased mRNA expression of hydrolyzing enzymes interfere with pro‐cytokine production and signalling, which may interfere with the onset and progression of inflammation.     

彭水县烟叶化学成分协调性不同年份间变异分析

为掌握重庆市彭水县烟叶协调性的时间变异特征,对2005—2014年上(B2F)、中(C3F)、下(X2F)部烟叶的协调性指标进行分析。结果表明:在彭水烟区烟叶钾氯比和两糖差变异系数较大,两糖比年度间变异最小,而其他化学成分含量的变异幅度在30%以内。从不同年份部位间变异来看,各化学成分及协调性指标均有逐渐稳定的趋势。从不同部位间对比来看,上部叶各化学成分协调性指标年度间变异总体上大于中、下部叶。     

Some Agronomic Strategies for Organic Quinoa (Chenopodium quinoa Willd.)

Quinoa is a potential new seed crop for protein feed and human consumption in Europe, with tolerance to a range of abiotic stresses. For this purpose the study was planned to analyse the effect of important agronomic strategies like nitrogen level, N application strategy, row spacing and harvest time on yield and quality of quinoa. The experiments took place in the field of the experimental station of the Faculty of Science, University of Copenhagen. Three levels of organic nitrogen from slurry was used (60, 120 and 180 kg N ha^?1), supplied either all at once at sowing, or split between sowing and beginning of the reproductive phase. The effect of row spacing and harvest time was studied by harvesting seeds at seed maturity, which occurred 2–3 weeks prior to the mechanical harvest by threshing, and a couple of months after. Yield increased significantly (P ≤ 0.05) with an application up to 180 kg N ha^?1, reaching 2200 kg ha^?1. Increasing N also caused a significantly increased seed weight (up to 3.3 mg) and protein content (up to 17 %). N level did not affect number and amount of weeds. Split application with part of the N applied at bud formation did not have a significant effect on yield. Delayed harvest had a negative influence on seed weight, whereas protein content was stable after harvesting even a month after seed maturity. A late harvest significantly reduced seed germination, being reduced by 50 % after a 2‐month delay. A conclusion from this study is that both yield and protein content of seed can be manipulated by N level and application strategy. Harvest time is important for securing a high seed quality measured as seed germination, seed weight and protein content. A fast germination of quinoa is an important characteristic demonstrating that the crop has good possibilities for being well‐established in the field when free from weeds at the time of sowing. The choice of row spacing is important and depends on weed control method. Weed control strategy should be developed based on modern precision tools.     

Why viewing nature is more fascinating and restorative than viewing buildings: A closer look at perceived complexity

The present paper addresses the question which visual features trigger people’s often more positive affective responses to natural compared to built scenes. Building on notions about visual complexity and fractal geometry, we propose that perceived complexity of magnified scene parts can predict the greater fascinating and restorative qualities of natural versus built scenes. This prediction was tested in an experiment in which 40 participants viewed and rated 40 images of unspectacular natural and built scenes in their original size, and at 400% and 1600% magnification levels. Results showed that the original, unmagnified natural scenes were viewed longer and rated more restorative than built scenes, and that these differences were statistically mediated by the greater perceived complexity of magnified parts of natural scenes. These findings fit with the idea that fractal-like, recursive complexity is an important visual cue underlying the restorative potential of natural and built environments.