Limited effects of land use on soil dissolved organic matter chemistry as assessed by excitation–emission fluorescence spectroscopy and molecular weight fractionation

Dissolved organic matter (DOM) in soil solution represents a complex mixture of organic molecules and plays a central role in carbon and nitrogen cycling in plant–microbial–soil systems. We tested whether excitation–emission matrix (EEM) fluorescence spectroscopy can be used to characterize DOM and support previous findings that the majority of DOM is of high molecular weight (MW). EEM fluorescence spectroscopy was used in conjunction with MW fractionation to characterize DOM in soil solution from a grassland soil land management gradient in North Wales, UK. Data analysis suggested that three distinct fluorescence components could be separated and identified from the EEM data. These components were identified as being of humic‐like or fulvic‐like origin. Contrary to expectations, the majority of the fluorescence signal occurred in the small MW (<1 kDa) fraction, although differences between soils from the differently managed grasslands were more apparent in larger MW fractions. We conclude that following further characterization of the chemical composition of the fluorophores, EEM has potential as a sensitive technique for characterizing the small MW phenolic fraction of DOM in soils.     

Evaluating biodegradability of soil organic matter by its thermal stability and chemical composition

The stability of soil organic matter (SOM) as it relates to resistance to microbial degradation has important implications for nutrient cycling, emission of greenhouse gases, and C sequestration. Hence, there is interest in developing new ways to quantify and characterise the labile and stable forms of SOM. Our objective in this study was to evaluate SOM under widely contrasting management regimes to determine whether the variation in chemical composition and resistance to pyrolysis observed for various constituent C fractions could be related to their resistance to decomposition. Samples from the same soil under permanent pasture, an arable cropping rotation, and chemical fallow were physically fractionated (sand: 2000-50 μm; silt: 50-5 μm, and clay: <5 μm). Biodegradability of the SOM in size fractions and whole soils was assessed in a laboratory mineralization study. Thermal stability was determined by analytical pyrolysis using a Rock-Eval pyrolyser, and chemical composition was characterized by X-ray absorption near-edge structure (XANES) spectroscopy at the C and N K-edges. Relative to the pasture soil, SOM in the arable and fallow soils declined by 30% and 40%, respectively. The mineralization bioassay showed that SOM in whole soil and soil fractions under fallow was less susceptible to biodegradation than that in other management practices. The SOM in the sand fraction was significantly more biodegradable than that in the silt or clay fractions. Analysis by XANES showed a proportional increase in carboxylates and a reduction in amides (protein) and aromatics in the fallow whole soil compared to the pasture and arable soils. Moreover, protein depletion was greatest in the sand fraction of the fallow soil. Sand fractions in fallow and arable soils were, however, relatively enriched in plant-derived phenols, aromatics, and carboxylates compared to the sand fraction of pasture soils. Analytical pyrolysis showed distinct differences in the thermal stability of SOM among the whole soil and their size fractions; it also showed that the loss of SOM generally involved preferential degradation of H-rich compounds. The temperature at which half of the C was pyrolyzed was strongly correlated with mineralizable C, providing good evidence for a link between the biological and thermal stability of SOM.     

Density responses and spatial distribution of cotton yield and yield components in jujube (Zizyphus jujube)/cotton (Gossypium hirsutum) agroforestry

Trees are the dominant species in agroforestry systems, profoundly affecting the performance of understory crops. Proximity to trees is a key factor in crop performance, but rather little information is available on the spatial distribution of yield and yield components of crop species under the influence of trees in agroforestry systems. Also, little information is available on how crop density may be exploited to optimize the yield in such systems. Here we studied the performance of cotton in jujube/cotton agroforestry. Field experiments were conducted in 2012 and 2013 in Hetian, Xinjiang, China. Cotton was grown at a row distance of 60 cm in three densities, 13.5, 18.0 and 22.5 plants m⁻² in six m wide paths between tree lines in a jujube plantation. Plant density affected both cotton aboveground dry matter and yield significantly. The highest yield was attained at the intermediate density of 18.0 plants m⁻² (20.0 plants m⁻² corresponding in sole cotton), lower than the optimal density in sole cotton (25.0 plants m⁻²). Yield at the lower density was constrained by the low number of bolls per m² as a direct consequence of the low density, whereas at the high plant density yield was constrained by a lower allocation of assimilates to cotton seed and lint, as a consequence of intraspecific and interspecific competitions. There were strong gradients in yield and yield components in relation to the distance from the tree rows. Leaf area and total dry matter of cotton in rows close to the tree lines were reduced, especially in the rows next to the trees. Moreover, biomass allocation to cotton fruits was reduced in these rows. Competitive influences from the trees on cotton performance extended two rows deep in a six-year old jujube stand, and even three rows deep in a seven-year old stand. Shading effects on cotton yield were compensated by increasing plant density as a result of greater boll numbers per unit ground area. Data from this study help guide the design of optimal plant density of cotton in jujube plantations and give insight in the spatial distribution and dynamics of competitive effects in agroforestry systems in general.     

遮穗和去颖下燕麦穗部特征变化和穗部光合贡献率估算

随着探索提高植物整体光合能力相关研究的不断开展，麦类作物穗部器官等植物非叶绿色器官光合潜力挖掘逐渐得到关注。本研究在成都平原秋播美达、贝勒、莫尼卡、摄政王、泰克和甜燕60等6个品种燕麦，设置遮穗、去颖2个试验处理，比较分析了各品种间穗部特征、穗部光合贡献率、颖片光合贡献率和茎光合物质转移率等差异。结果表明，燕麦穗部器官光合贡献率为28.56%～49.05%，其中甜燕60最高；6个品种燕麦的颖片光合贡献率为11.03%～36.88%，茎光合物质转移率为6.65%～35.81%。燕麦穗部器官对籽实增重表现了较高的光合贡献，当燕麦穗部器官光合受到限制时，燕麦单粒种子重和单穗种子数显著降低，尤其是影响双粒小穗数。     

Soil aggregation: Influence on microbial biomass and implications for biological processes

Our 1988 paper, describing the effects of cultivation on microbial biomass and activity in different aggregate size classes, brought together the ‘aggregate hierarchy theory’ and the ‘microbial biomass concept’. This enabled us to identify the relationships between microbial and microhabitat (aggregate) properties and organic matter distribution and explain some of their responses to disturbance. By combining biochemical and direct microscopy based quantification of microbial abundance with enzyme activities and process measurements, this study provided evidence for the role of microbial biomass (especially fungi) in macroaggregate dynamics and carbon and nutrient flush following cultivation. In the last ten years environmental genomic techniques have provided much new knowledge on bacterial composition in aggregate size fractions yet detailed information about other microbial groups (e.g. fungi, archaea and protozoa) is lacking.We now know that soil aggregates are dynamic entities – constantly changing with regard to their biological, chemical and physical properties and, in particular, their influences on plant nutrition and health. As a consequence, elucidation of the many mechanisms regulating soil C and nutrient dynamics demands a better understanding of the role of specific members of microbial communities and their metabolic capabilities as well as their location within the soil matrix (e.g. aggregates, pore spaces) and their reciprocal relationship with plant roots. In addition, the impacts of environment and soil type needs to be quantified at the microscale using, wherever possible, non-destructive ‘in situ’ techniques to predict and quantify the impacts of anthropogenic activities on soil microbial diversity and ecosystem level functions.     

Greater humification of belowground than aboveground biomass carbon into particulate soil organic matter in no-till corn and soybean crops

Quantifying the amount of carbon (C) incorporated from decomposing residues into soil organic carbon (C_S) requires knowing the rate of C stabilization (humification rate) into different soil organic matter pools. However, the differential humification rates of C derived from belowground and aboveground biomass into C_S pools has been poorly quantified. We estimated the contribution of aboveground and belowground biomass to the formation of C_S in four agricultural treatments by measuring changes in δ¹³C natural abundance in particulate organic matter (C_POM) associated with manipulations of C₃ and C₄ biomass. The treatments were (1) continuous corn cropping (C₄ plant), (2) continuous soybean cropping (C₃), and two stubble exchange treatments (3 and 4) where the aboveground biomass left after the grain harvest was exchanged between corn and soybean plots, allowing the separation of aboveground and belowground C inputs to C_S based on the different δ¹³C signatures. After two growing seasons, C_POM was primarily derived from belowground C inputs, even though they represented only ∼10% of the total plant C inputs as residues. Belowground biomass contributed from 60% to almost 80% of the total new C present in the C_POM in the top 10 cm of soil. The humification rate of belowground C inputs into C_POM was 24% and 10%, while that of aboveground C inputs was only 0.5% and 1.0% for soybean and corn, respectively. Our results indicate that roots can play a disproportionately important role in the C_POM budget in soils. Keywords Particulate organic matter; root carbon inputs; carbon isotopes; humification rate; corn; soybean.     

仿生法评定抗草甘膦玉米和转Bt基因玉米的酶水解物能值的研究

本试验旨在分析抗草甘膦玉米和转Bt基因玉米原料及饲粮与同源非转基因玉米原料及饲粮体外总能消化率以及酶水解物能值,为转基因玉米的营养实质等同性仿生评定方法的研究提供参考。试验采用单因素完全随机设计,使用单胃动物仿生消化系统模拟饲料原料和饲粮在鸡胃肠道的消化过程,分析同源非转基因玉米、抗草甘膦玉米和转Bt基因玉米以及对应的3种玉米-豆粕饲粮在不同体外模拟消化阶段的干物质消化率、总能消化率和酶水解物能值的差异。结果表明:同源非转基因玉米、抗草甘膦玉米和转Bt基因玉米以及对应饲粮在常规概率成分含量上是相似的。抗草甘膦玉米及饲粮与同源非转基因玉米及饲粮相比,在干物质和能量胃消化率、全消化道消化率及酶水解物能值上均没有显著差异(P0.05)。转Bt基因玉米全消化道总能消化率低于同源非转基因玉米(P=0.03,变异系数=0.50%),对应玉米饲粮的酶水解物能值则高于同源非转基因玉米饲粮(P=0.02,变异系数=1.12%),但均处于仿生消化系统测试的误差范围内(变异系数≤1.64%)。由此可见,抗草甘膦玉米的酶水解物能值与同源对照玉米没有差异,而转Bt基因玉米存在统计学意义上的差异,但所有的测值均处于仿生消化系统的测试误差之内。仿生法发现的差异是否具有生物学意义有待体内试验验证。仿生法可为转基因饲料营养等同性研究提供一种新方法。     

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

Here, we examine soil-borne microbial biogeography as a function of the features that define an American Viticultural Area (AVA), a geographically delimited American wine grape-growing region, defined for its distinguishing features of climate, geology, soils, physical features (topography and water), and elevation. In doing so, we lay a foundation upon which to link the terroir of wine back to the soil-borne microbial communities. The objective of this study is to elucidate the hierarchy of drivers of soil bacterial community structure in wine grape vineyards in Napa Valley, California. We measured differences in the soil bacterial and archaeal community composition and diversity by sequencing the fourth variable region of the small subunit ribosomal RNA gene (16S V4 rDNA). Soil bacterial communities were structured with respect to soil properties and AVA, demonstrating the complexity of soil microbial biogeography at the landscape scale and within the single land-use type. Location and edaphic variables that distinguish AVAs were the strongest explanatory factors for soil microbial community structure. Notably, the relationship with TC and TN of the <53 μm and 53–250 μm soil fractions offers support for the role of bacterial community structure rather than individual taxa on fine soil organic matter content. We reason that AVA, climate, and topography each affect soil microbial communities through their suite of impacts on soil properties. The identification of distinctive soil microbial communities associated with a given AVA lends support to the idea that soil microbial communities form a key in linking wine terroir back to the biotic components of the soil environment, suggesting that the relationship between soil microbial communities and wine terroir should be examined further.     

Effects of organic matter addition on phosphorus availability to flooded and nonflooded rice in a P‐deficient tropical soil: a greenhouse study

Addition of organic matter (OM) to flooded soils stimulates reductive dissolution of Fe(III) minerals, thereby mobilizing associated phosphate (P). Hence, OM management has the potential to overcome P deficiency. This study assessed if OM applications increases soil or mineral fertilizer P availability to rice under anaerobic (flooded) condition and if that effect is different relative to that in aerobic (nonflooded) soils. Rice was grown in P‐deficient soil treated with combinations of addition of mineral P (0, 26 mg P/kg), OM (0, ~9 g OM/kg as rice straw + cattle manure) and water treatments (flooded vs nonflooded) in a factorial pot experiment. The OM was either freshly added just before flooding or incubated moist in soil for 6 months prior to flooding; blanket N and K was added in all treatments. Fresh addition of OM promoted reductive dissolution of Fe(III) minerals in flooded soils, whereas no such effect was found when OM had been incubated for 6 months before flooding. Yield and shoot P uptake largely increased with mineral P addition in all soils, whereas OM addition increased yield and P uptake only in flooded soils following fresh OM addition. The combination of mineral P and OM gave the largest yield and P uptake. Addition of OM just prior to soil flooding increased P uptake but was insufficient to overcome P deficiency in the absence of mineral P. Larger applications of OM are unlikely to be more successful in flooded soils due to side effects, such as Fe toxicity.     

Selenium supplementation improves nutrient intake and digestibility,and mitigates CH4 emissions from sheep grazed on the mixed pasture of alfalfa and tall fescue

Low selenium (Se) in soil and forage can adversely affect on the quality of animal-derived foods, and hence on human health. Lambs grazed on mixed pastures of alfalfa (Medicago sativa) and tall fescue (Festuca arundinacea) were supplemented with five levels of Se [0, 3, 6, 9 and 12 µg/kg body weight (BW)]. The intake of dry matter (DM) and organic matter (OM) varied with the level of Se supplementation, with a peak at 6 µg Se per kg BW (p ≤ 0.05). Gross energy (GE) intake, digestive energy (DE) intake and metabolic energy (ME) intake were higher at 6 µg Se per kg BW than at other Se levels (p < 0.01); in addition, methane energy (CH₄-E) output was lower at 6 µg Se per kg BW. Supplementation with Se significantly increased nitrogen (N) intake, faecal N and urine N, for which the peak values were 20.2 g N/, 5.62 g N/day and 7.92 g N/day, respectively, at 6 µg Se per kg BW. Se intake, blood Se, faecal Se, urine Se and retained Se were negatively correlated with forage crude protein (CP) content (p < 0.001) but were positively correlated with the content of neutral detergent fibre (NDF) (p < 0.001) and acid detergent fibre (ADF) (p < 0.001). Thus, we recommend the addition of 6 µg Se per kg BW to sheep grazed on pastures in regions with low soil Se.