四川桃树螺旋线虫的记述

记述了四川７种桃树螺旋线虫，其中除Ｈｅｌｉｃｏｔｙｌｅｎｃｈｕｓｄｉｇｉｔｉｆｏｒｍｉｓ已有报道外，其余６种国内未见正式报道。     

Testate amoebae as predators of nematodes

Testacea were observed ingesting nematodes in the litter horizons of native forests in New Zealand. Nematodes were most commonly attacked from the tail end but some specimens were attacked at mid-body. Nematodes with damaged tails were recovered in greatest numbers from the highest, wettest site sampled. Nebela (Apodera) vas (Certes, 1989) and Difflugia sp. (possibly lanceolata Penard, 1890) were the predators; both species were redescribed using light and scanning electron microscopy and morphometry. Most damaged nematodes were Ironus sp. but Clarkus, Tobrilus, Iotonchus, Cobbonchus, Dorylaimus and Plectus were also attacked. Literature on testacean feeding strategies was reviewed briefly.     

温度和PH值对节丛孢属食线虫真菌生长的影响观察

对ｐＨ值和温度对节丛孢属食线虫真菌生长的影响进行了观测,结果表明,节丛孢属食线虫真菌在ｐＨ５．０～８．０之间均能够生长,但ｐＨ６．０～６．５时,生长最佳,真菌在１０～３０℃时均能生长,５℃和３５℃时则基本停止生长,真菌在２０～２５℃激发,生长最佳。     

Transitory dynamic effects in the soil invertebrate community in a temperate deciduous forest: Effects of resource quality

The importance and strength of bottom-up forces in terrestrial soil systems are poorly understood. In contrast to aquatic systems, where trophic cascades and top-down forces dominate, it has been postulated that terrestrial systems are regulated mainly by bottom-up forces. We set up a 17 month field experiment to study the effects of addition of resources of different quality (wood, wheat bran, pet food, and glucose+phosphorous+nitrogen) on the soil micro-, meso- and macrofauna as well as on microbial biomass, ergosterol content and abiotic parameters (soil pH, water content, carbon and nitrogen content) in a beech forest (Fagus sylvatica) on sandstone. We hypothesized that bottom-up effects will be strong on lower trophic levels resulting in increased biomass of bacteria and fungi, and that this increase will propagate to higher trophic levels (microbivorous invertebrates, predators) but with decreasing intensity due to dampening of bottom-up forces at higher trophic levels by high connectivity, trophic-level-omnivory and generalist feeding. The results of the study in general did not support these hypotheses. Microbial biomass only moderately increased after resource addition, and while densities of several animal groups increased (lumbricids, nematodes, collembolans, gamasid mites, staphylinid beetles), densities of other groups declined (oribatid mites, prostigmate mites, lithobiids), and a large number of taxa remained unaffected (enchytraeids, diplopods, uropodine mites, pseudoscorpions, spiders). We conclude that (a) bottom-up forces are of limited importance in the soil system of temperate deciduous forests, (b) large primary decomposers, such as earthworms, do not depend on microorganisms as food but consume organic matter directly, (c) the link between microorganisms and microbivores, such as collembolans, is weak since collembolan density increased even though microbial biomass was unaffected, (d) habitat modification by ecosystem engineers, such as earthworms, is more important than resource availability for a number of soil invetebrates including prostigmate mites and centipedes, and (e) the soil food web in general is rather resistant responding little to changes in resource supply. The results also suggest that species which commonly are assigned to single trophic groups, such as collembolans, differently respond to changes of the base of the food web. Increased fungal biomass led to an increase in the density of Folsomia quadrioculata s.l. and Isotomiella minor, whereas the increased bacterial biomass was accompanied by an increase in density of Ceratophysella denticulata and Isotoma notabilis.     

Design and evaluation of nematode 18S rDNA primers for PCR and denaturing gradient gel electrophoresis (DGGE) of soil community DNA

Consensus nematode 18S ribosomal DNA primers were designed by aligning available 18S sequences and identifying a variable region flanked by highly conserved regions. These primers were then used to amplify nematode 18S rDNA from whole soil community DNA extracted from a range of European grassland types. Cloning of the PCR amplicons (778 bp) followed by restriction digest analysis (RFLP) resulted in the recovery of 34 unique nematode sequences from the four grasslands studied. Comparison of these data with the limited number of 18S rDNA nematode sequences currently held in on-line databases revealed that all of the sequences could be assigned to known nematode taxa albeit tentatively in some cases. Two of the sequences recovered from the site in the Netherlands (wet, hay-grassland) were recovered in a clade that included a sequence of the genus Trichodorus whilst other sequences from this site showed similarity with 18S rDNA sequences of the genus Prismatolaimus (five sequences), Xiphinema (one sequence) and Enoplus (one sequence). Of the remaining sequences, two showed some affinity with Mylonchulus (UK, upland peat), four with Steinernema (UK) and one sequence with Mesorhabditis (Hungary, east European Steppe). Three sequences from the Netherlands and one from Hungary were recovered in a clade that included a sequence of the genus Pratylenchoides whilst three further sequences from the Netherlands and two from Hungary were recovered in a clade encompassing the genus Globodera. Of the remaining nine sequences, two (NL6, NL62) formed a distinct lineage within the Adenophorea with 90% bootstrap recovery in a paraphyletic clade that included sequences of Prismatolaimus and Trichodorus. Seven sequences (three from the Netherlands, three from the UK and one from Greece) were left unassigned though the tree topology suggested some relationship (58% bootstrap recovery) with the genus Cephalobus. To assess whether primers used to amplify 18S rDNA might be used to fingerprint genetic diversity in nematode communities in soil, the environmental sequence data were used to design a second set of primers carrying a GC-clamp. These primers amplified a 469 bp fragment internal to the region flanked by the primer set used to derive the nematode trees and were used to amplify 18S rDNA for subsequent analysis using denaturing gradient gel electrophoresis (DGGE). DGGE analysis of six major European grassland types revealed considerable genetic diversity between sites. However, the relationships seen with the DGGE data were inconsistent with previous studies where the same soils had been characterized with respect to functional and morphological diversity. To confirm that this second set of primers was amplifying nematode sequences, selected bands on the DGGE gels were extracted, PCR amplified and sequenced. The final alignment was 337 bases. These analyses revealed the presence of sequence signatures from the genera Paratrichodorus, Plectus, Steinernema, Globodera, Cephalobus and Pratylenchoides.     

Assessment of nematode biodiversity using DGGE of 18S rDNA following extraction of nematodes from soil

Soil nematodes are both taxonomically and functionally diverse, respond quickly to soil perturbation and have much potential as indicators of soil health. However, because of the perceived difficulty of identifying nematodes to species level morphologically, they are frequently neglected in soil ecological studies. Recently, extraction of soil DNA, amplification of 18S rDNA genes using nematode consensus primers and subsequent separation by denaturing gradient gel electrophoresis (DGGE) has been used to estimate nematode diversity in soil. Here, we investigate an alternative approach whereby nematodes are first extracted from the soil prior the 18S rDNA gene amplification using universal primers. We used this system to estimate nematode species richness in 10 soil samples—five from Scotland and five from the Netherlands. There was no direct correlation between species richness as estimated morphologically and by the PCR-DGGE method. However, inspection of the data suggested that the samples fell into two discrete groups, which was confirmed by canonical and stepwise discriminant function analysis; the values for the Shannon and equitability indices being important discriminators. Further analysis revealed a significant relationship between morphological species richness and DGGE estimates for species that represented greater than 1% of the sample biomass.     

Soil nematode biodiversity

Summary Nematodes are the most abundant metazoans in soil, and are exceeded in species diversity only by the arthropods. Estimates of nematode diversity in natural and agroecosystems have been based on both species-level taxonomy and trophic-level guilds. Because trophic groups do not act in a unitary manner with respect to environmental alterations, species-level analysis is more meaningful and should be preferred for most kinds of investigations. Nematodes of a biotope have often been considered as mere assemblages, but there is increasing evidence that certain plant associations have characteristic groups of species. This concept has been used by Bongers to develop a maturity index relating nematode families and site stability, and to identify assemblages that colonize disturbed soils. Major constraints on detailed ecological studies of soil nematode faunas are an incomplete understanding of trophic groups and their subsets, the need for repeated sampling of seasonally variable populations, and a severe shortage of taxonomy-competent persons, especially for microbial feeders.     

Managing crop root zone ecosystems for prevention of harmful and encouragement of beneficial nematodes

The goal of agricultural nematologists is usually considered to be the prevention of harmful nematode populations from reaching levels that cause noticeable yield losses in field crops. Usually, it is the plant-parasitic nematodes that are attributed with constraining plant growth and development. Not nearly as well understood is the impact on crop plants of the non-plant-parasitic and bacteria-feeding nematodes. This latter group can interact with plant-growth-promoting bacteria to improve soil fertility and improve crop productivity. The challenge has become finding methods to develop and maintain those systems that build-up beneficial nematode populations while simultaneously suppressing plant-parasitic nematodes and associated plant pathogens. Beneficial soil nematodes are usually more abundant in crop management systems subjected to sophisticated crop sequences, cultivation practices and organic amendments. Models to predict the population dynamics of a nematode species have been developed. However, the inadequacies of nematode identification, compounded by the irregular distribution of nematodes in soil, have made it difficult to obtain reliable data on nematode distribution and abundance with which to refine these simulation models. Since many different nematode extraction methods are in use today it also becomes extremely difficult to meaningfully compare quantitative data from different laboratories. As the number of factor variables affecting soil nematode populations is large and monitoring seasonal populations awkward, nematode influence on crop health and yield determination is seldom fully recognized. Thus, it is usually only those catastrophic nematode outbreaks that are recognized, while systematic benefits are rarely recognized or appreciated. Perhaps, with the utilization of molecular biotechnology it will become possible to better elucidate nematode plant–host interactions. Clearly, these root zone relationships will increasingly become a key component in understanding soil ecosystem function and lead to better cropping system design.     

The influence of plant litter diversity on decomposer abundance and diversity

Although there has been much recent interest in the effect of litter mixing on decomposition processes, much remains unknown about how litter mixing and diversity affects the abundance and diversity of decomposer organisms. We conducted a litter mixing experiment using litterbags in a New Zealand rainforest, in which treatments consisted of litter monocultures of each of 8 forest canopy and understory plant species, as well as mixtures of 2, 4 and 8 species. We found litter mixing to have little effect on net decomposition rates after either 279 or 658 days, and for each species decomposition rates in mixture treatments were the same as in monoculture. Litter species identity had important effects on litter microfauna, mesofauna and macrofauna, with different litter types promoting different subsets of the fauna. Litter mixing had few effects on densities of mesofauna and macrofauna, but did have some important effects on components of the microfauna, notably microbe-feeding and predatory nematodes. At day 279, litter mixing also consistently reduced the ratio of bacterial-feeding to microbe-feeding (bacterial-feeding+fungal-feeding) nematodes, pointing to mixing causing a significant switch from the bacterial-based to the fungal-based energy channel. Litter mixing sometimes influenced the community composition and diversity of nematodes and macrofauna, but effects of litter mixing on diversity were not necessarily positive, and were much weaker than effects of litter species identity on diversity. We conclude that litter mixing effects on the abundance and diversity of decomposer biota, when they occur, are likely to be of secondary and generally minor significance when compared to the effects of litter species identity and composition.     

Oscillating dynamics of bacterial populations and their predators in response to fresh organic matter added to soil: The simulation model ‘BACWAVE-WEB’

Recently, regular oscillations in bacterial populations and growth rates of bacterial feeding nematodes (BFN) were shown to occur after addition of fresh organic matter to soil. This paper presents a model developed to investigate potential mechanisms of those oscillations, and whether they were initiated by bacteria-substrate interactions or by predatory regulation of bacteria. The model was also used to investigate mineral nitrogen release during short-term organic matter decomposition. Experimental data originated from several microcosm experiments with a sandy soil amended with clover-grass mixture. Numbers of bacteria and BFN, and nitrate and ammonium content in soil were measured daily during about a month, whereas protozoa were counted occasionally. A substrate-based food web model was constructed with 3 plant residue and 5 soil organic matter compartments, 3 trophic groups of bacteria (copiotrophic, oligotrophic and hydrolytic), and two predatory groups (BFN and protozoa). Both carbon and nitrogen flows between these compartments were modelled. Fluctuations in microbial populations in soil after plant residue incorporation could be reproduced with and without participation of predators. The first two peaks in bacterial numbers were mainly related to bacteria-substrate interactions, while predators (particularly protozoa) influenced bacterial dynamics during later stages of bacterial community development. Oligotrophic bacteria had a stabilizing effect on fluctuations of other trophic groups, and were the main source of nutrients for predators. A peak in soil ammonium occurred within 1 week after residue incorporation. Nitrate increased sigmoidally after a short lag phase. The final nitrate concentration was primarily determined by bacterial dynamics, and to a lesser extent by protozoa and nematodes. This model indicates the importance of substrate-consumer relations for regulation of populations at different trophic levels and nutrient release from fresh organic matter added to soil.