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Tobias W. Eschholz Roland Peter Peter Stamp Andreas Hund 《Genetic Resources and Crop Evolution》2008,55(7):971-983
About 65 years ago, more than 150 Swiss maize landraces (Zea mays L. ssp. mays) of the flint type were collected and conserved ex situ. Due to the climatically and culturally diverse environment of the Alps, a considerable genetic diversity of this material
was assumed. To prove this, an efficient method was required to carry out genetic profiling of all the accessions in the Swiss
Gene Bank. Simple sequence repeat marker (SSR) profiling in combination with the visualization of the polymerase chain reaction
(PCR) products on agarose gels was chosen. Here a set of 19 different landrace accessions was analyzed to: (i) investigate
their genetic diversity, (ii) investigate and display the population structure and (iii) determine whether DNA bulks rather
than single plants can be used for such analyses. Four repeated samples of one accession were found to be much closer to one
another than to the rest of accessions. Furthermore, specific alleles were identified for several accessions. The PCR products
of the bulked DNA samples represented only a small part of the variation revealed by the analysis of individuals. Loci with
four base repeat motifs performed better in the analysis of bulks than loci with other repeat motifs. The correlation between
genetic distance matrices, based on the analysis of individuals and bulks, respectively, was significant. Thus, the single
plant approach allowed for sufficient differentiation of accessions, and DNA bulks visualized on agarose gels led to correlated
genetic distances although a limited number of alleles were detected. Although the limited resolution of agarose gels likely
causes some bias, profiling of larger sets with the individual plant approach appears feasible and more informative compared
to the bulk analysis we conducted. 相似文献
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河北水稻地方种质品质多样性分析 总被引:2,自引:1,他引:1
为了揭示河北水稻地方种质资源品质性状遗传多样性,采用多样性指数、主成分分析、聚类分析等方法对收集的109份河北水稻地方种质15个品质性状进行了遗传多样性评价。结果表明:河北水稻地方种质存在丰富的遗传多样性。15个品质性状平均变异系数为23.03%,平均多样性指数为1.92。垩白粒率、垩白度、粒长、蛋白质含量、米饭硬度5个性状多样性指数大于2,表明这些河北水稻地方种质在这些性状上遗传变异丰富。根据主成分分析,15个品质性状可归纳成为4个主成分因子,其累积贡献率包含了15个变量83.04%的信息。米饭食味、直链淀粉含量、精米率、垩白度是影响河北水稻地方种质品质的主要因素。采用4个主成分因子欧式距离聚类分析结果表明,在遗传距离D=16.5处,可以将109份地方种质分为4类,但不同来源的河北地方水稻种质交错分布聚类。本研究为河北地方水稻种质的利用提供了科学依据。 相似文献
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