德南牛全基因组变异解析和功能基因挖掘

[目的]研究德南牛的群体遗传结构和解析影响其重要性状的关键基因。[方法]通过主成分分析、群体进化树分析、群体遗传结构分析等方法,研究德南牛的遗传结构和与其他品种的亲缘关系;同时,利用全基因组SNP数据,计算德南牛与德国黄牛、南阳牛群体固定指数(Fst)和核苷酸多样性比值(π ratio)、复合似然比(CLR)、XP-EHH等多种选择信号指标,以筛选出德南牛基因组上受到选择的信号,鉴定出重要的候选基因。[结果] 德南牛具有欧洲普通牛(0.789)、东亚牛(0.176)、中国瘤牛(0.035)的混合血统。在θπ和CLR方法中鉴定出93个共有基因,使用FST和XP-EHH方法鉴定出17个共有基因。进行富集以及基因功能注释后,发现这些基因可能与生殖性能(TUBB3、NSD2、GRM1、ERBB4)、生长性状(RFX3、FGFR3、GABRB1、PDE4D)、环境适应性(PGR、GRIA4)和免疫系统反应(P2RY12、P2RY13、GPR87、P2RY14、GPR171)有关。[结论]本项研究发现德南牛血统受德国黄牛影响较多,且挖掘了德南牛基因组内可能具有经济意义的性状相关的选择特征,为德南牛种群的选育提高提供理论支撑。     

甘孜藏牛mtDNA 基因组遗传多样性分析

［目的］探究甘孜藏牛的mtDNA基因组遗传多样性与母系起源。［方法］采用mtDNA全基因组序列比对及生物信息学方法。［结果］结果显示：在28头甘孜藏牛mtDNA 基因组中,共检测到1232个变异位点,确定了22种单倍型,其单倍型多样度（Hd）为0.98820±0.00010,核苷酸多样度（Pi）为0.02420±0.00003,表明甘孜藏牛具有丰富的母系遗传多样性。系统发育树和网络分布图表明,28头甘孜藏牛mtDNA基因组包括4种母系支系,分别为普通牛的T2、T3与T4支系,还有牦牛支系,其中T2支系占7.14%,T3支系占64.29%,T4支系占3.57%,牦牛支系占25 %。［结论］甘孜藏牛具有较丰富的母系遗传多样性,为普通牛母系起源,但与牦牛有杂交。     

红马银花的资源状况及其生长规律的调查研究

目的分析红马银花(Rhododendron vialii)的遗传多样性以推测其濒危原因,为保护和开发利用红马银花提供理论依据。方法利用SSR分子标记技术,对云南省4个红马银花居群共155个个体的遗传多样性和遗传结构进行了分析。结果8个位点共检测到57个多态性位点,平均每个位点有6对等位基因;在物种水平上具有较高遗传多样性(不同等位基因数N_e=2.780±0.166,有效等位基因数N_a=5.563±0.269,Shannon’s信息指数I=1.156±0.057,观测杂合度H_o=0.546±0.038,期望杂合度H_e=0.598±0.025)。AMOVA分析显示：遗传多样性81%来自居群内,19%来自居群之间,并且居群分化系数(F_st)为0.094±0.020。居群内近交系数(F_is)为0.088±0.081;Structure聚类分析将4个居群聚为2组。结论导致红马银花濒危的主要原因是生境遭到破坏,遗传多样性暂时没有受到很大的影响,建议主要以就地保护为宜。     

不同种源刨花润楠苗期生长及叶片性状变异的研究

以刨花润楠主要分布区的14个种源为研究对象,在广州增城开展种源试验,通过对14个种源的刨花润楠苗高、地径、叶面积、叶周长等性状进行观测,分析不同种源苗期性状的遗传变异规律。结果表明：3个生长性状种源间和种源内变异系数相当,其种源间和种源内生长性状变异均较丰富;8个叶片性状种源间的变异系数为17.52%～44.71%,不同种源间叶片性状亦变异明显;生长性状的种源遗传力均大于0.750,说明在一定程度上刨花润楠的苗高、地径等苗期生长性状受自身遗传控制,且不同种源间变异明显,种源选择潜力较大。刨花润楠苗期生长性状的地理及气候变异趋势不明显,表现出随机现象;苗木生长性状与叶片大小呈负相关,即叶片越大、叶柄越长,苗木生长有变慢的趋势;对种源苗期性状进行聚类,可将刨花润楠14个种源划分为5个类群;刨花润楠苗期生长及叶片性状有一定的地理趋势,但也有一定的随机性。以地径为标准对刨花润楠优良种源进行筛选,初步选出永春、兴安、昭平3个种源作为适宜广东地区造林的优势种源。     

Seedling emergence,coleoptile length,and plant height relationships in crosses of dwarf and standard-height wheats

Summary Seedling emergence was closely correlated with coleoptile length and plant height among parents, F₂ and F₃, populations of crosses involving dwarf wheats Olesen Dwarf (CI 14497), Norin 10 derivative D6301, Tom Thumb derivative D6899, and the standard-height varieties Ramona 50 and Nainari 60. Genetic mechanisms that governed plant height also influenced coleoptile length, but the relative effects of genes showing dominant or epistatic effects appeared to be different. With respect to the two parents involved in each of 15 crosses, mean F₂ coleoptile lengths were consistently closer to the low parent value than were corresponding mean F₂ plant heights. A slight curvilinear relationship was also found between coleoptile length and plant height of F₃ lines. The results suggest that selection of semidwarf wheats with long coleoptiles and improved emergence properties from crosses involving the dwarf wheats of this study would be unlikely.     

Genetical relationships between reactions to bacterial leaf spot,yellow mosaic and Cercospora leaf spot diseases in mungbean (Vigna radiata)

Summary Studies on the inheritance pattern of bacterial leaf spot (BLS), yellow mosaic (YM) and Cercospora leaf spot (CLS) reactions in crosses of BLS and YM resistant/tolerant but CLS susceptible × CLS resistant but BLS and YM susceptible parents indicated that resistances to BLS and CLS were governed by single dominant genes, whereas YM tolerance was a monogenic recessive character. The studies also indicated that these three genes were inherited independently. The simple inheritance pattern and independent assortment of the genes governing resistance/tolerance to these diseases suggest that the usual breeding methods will be adequate to develop multi-disease resistant mungbean cultivars.Paper XII in the series Studies on resistance in crops to bacterial diseases in India.     

Symbiotic variability in Vicia faba. 1. Genetic variation in the Rhizobium leguminosarum population

Summary Twenty isolates taken at random from indigenous populations of Rhizobium leguminosarum sampled near Aberystwyth were each inoculated into plants of a standard Vicia faba variety grown aseptically under conditions free of combined nitrogen. Plants in association with the individual rhizobium isolates exhibited large differences in dry matter yield, nitrogen content, efficiency of nitrogen utilization and date of first flower. The implications of these differences to the productivity and reliability of varieties of field beans are discussed.     

新疆不同地区奶牛乳房炎β溶血性金黄色葡萄球菌毒力与基因相关性分析

从新疆5个地区8个奶牛场乳房炎奶样中分离的101株β溶血性金黄色葡萄球菌中随机选64株用小鼠进行毒力测定,同时用随机引物扩增多态性(RAPD)技术分别以3个随机引物进行基因相关性分析,建立种系进化树。结果表明,55%的菌株对小鼠具有较强毒力(可致小鼠2/3死亡),且在乌鲁木齐、奎屯和伊犁地区占据优势。基因相关性分析表明,当相对基因相关性为0.35时,被检测菌株主要分布于6个进化群,86.5%的菌株分布在A、B、C和E4个进化群。其中,50%菌株属于A群,13.5%属于B群,5.8%属于C群,17.3%属于E群。从地区分布可见,乌鲁木齐、伊犁和奎屯地区分离的菌株分别有69.6%、61.1%和71.4%分布在A群;昌吉3个牛场48%、24%的分离菌株分布在B群和C群;库尔勒牛场35.7%、57.1%的分离菌株分布在A群和E群。26株对小鼠具有致死性的菌株分布在A群,这些菌株占致死小鼠菌株的74.3%。