微卫星DNA在动物亲子鉴定中的应用及研究进展

本文概述了微卫星DNA进行亲子鉴定的基本原理与方法,将其用于亲子鉴定的优点以及研究进展,最后对未来的应用进行了展望。     

基于COI基因构建西北太平洋常见鱼类DNA条形码参考数据库

西北太平洋以其独特的地理位置和复杂的海洋环境,孕育了极为丰富的渔业资源,成为全球海洋生物多样性保护和渔业资源管理的热点区域。为了更有效地进行鱼类种类识别和多样性的调查,本研究建立了西北太平洋常见鱼类DNA条形码本地数据库。基于线粒体COI基因,对2023年6-8月在西北太平洋海域所采集的307份样品进行扩增和测序,共获得7目13科20属25种鱼类的COI基因序列。77.96%的COI序列在公共数据库中都能比对到高相似度序列。种间平均遗传距离为0.233,种内平均遗传距离为0.003,种间遗传距离是种内遗传距离的77.67倍,且能够形成明显的条形码间隙,不存在物种区分困难的现象。基于COI基因序列构建的系统发育树显示,同一属的鱼类首先聚为一支,随后与同一科的鱼类聚为一支,最后,同目不同科的鱼类聚为一支。综上所述,COI基因具有物种特异性,能够有效的区分西北太平洋常见鱼类物种,本数据库的初步建立,有利于后期利用环境DNA技术进行西北太平洋鱼类多样性的监测和调查,为西北太平洋海域生物多样性保护、资源管理和种群动态监测提供了技术支持。     

Inheritance and reliability of random amplified polymorphic DNA-markers in two consecutive generations of common carp (Cyprinus carpio L.)

Random amplified polymorphic DNA (RAPD) markers have been used in a variety of genetic studies in fisheries and aquaculture. Most population studies are performed without preliminary data demonstrating the Mendelian inheritance and reproducibility of RAPD markers. In this study, the inheritance and reproducibility of RAPD markers was examined in two consecutive generations of common carp, Cyprinus carpio L. Variability and segregation of RAPD markers were investigated in one F₁ progeny and three F₂ progenies. Seventy-four RAPD markers were generated by five primers using DNA extracted from the initial ornamental (koi) common carp female and wild-type colour common carp male. Fifty-five of these RAPD markers were transmitted to the F₁ progeny and the inheritance patterns were analysed. Twenty RAPD markers were fully reproducible and demonstrated dominant simple Mendelian inheritance patterns in two consecutive generations. Twenty-four RAPD markers were not reproducible in all progenies. Thirteen markers displayed inheritance ratios in the progenies that did not fit simple Mendelian inheritance patterns. Non-reproducibility of RAPD markers and distorted ratios may be caused by the absence of amplification, poor amplification or by the appearance of artefact bands. Random amplified polymorphic DNA markers with poor reproducibility and non-Mendelian inheritance can lead to misinterpretations of data in population studies, resulting in errors in the estimation of genetic diversity within and between individual populations. Therefore, it is recommended to first identify the set of reproducible RAPD markers that demonstrate Mendelian inheritance before application of the RAPD technique in population studies.     

A molecular marker linked to the Prv1 gene that confers resistance to Papaya ringspot virus-type W in melon

Papaya ringspot virus‐type W (PRSV‐W) is the most prevalent and important viral pathogen of cucurbits in Brazil. It can be effectively controlled by the incorporation of genetic resistance into susceptible melon cultivars. The present study identified amplified fragment length polymorphic (AFLP) markers linked to the PRSV‐W resistance Prv¹ allele. The susceptible yellow‐fleshed melon‐breeding line AF426^prv1 and its nearly isogenic‐resistant line AF426^Prv1, which carries the Prv¹ allele resident in the Indian cantaloupe U.S. Plant Introduction (PI) 180280, were screened for AFLP marker polymorphisms. Of 30 251 AFLP loci, only three were polymorphic between the nearly isogenic lines. Segregation analyses for these three polymorphic markers and the Prv¹ allele using a BC₁ population of 197 plants indicated close linkage (0.5% recombination frequency) between marker EK190 (HindIII‐CGA and MseI‐GTG; 190 bp) and Prv¹. Thus, EK190 might be a useful marker in breeding programmes aiming to develop melon cultivars resistant to PRSV‐W. The other two markers are closely linked to each other, but distantly linked to Prv¹.     

Genetic analysis of clinical and vaccine strains of Bordetella pertussis by Pulsed-Field Gel Electrophoresis (PFGE), Multi Locus Sequence Typing (MLST) and serotyping

In spite of high vaccination coverage in the Expanded Program of Immunization (EPI), pertussis has not been eradicated yet and the re-emergence of the disease is still reported worldwide. The genetic divergence study of circulating clinical strains of Bordetella pertussis among the population with high vaccination coverage is a useful tool to have an insight in the understanding of genetic patterns of this bacterium and deviation of them from vaccine strains. Different methods are accessible for studying of Bordetella pertussis that can perform appropriate assessment between populations. Strains used in this study were a collection of two pertussis vaccine strains used to create killed pertussis vaccine over years at Razi Vaccine and Serum Research Institute, 10 clinical and 2 reference strains (ATCC9797 and Tohama I) in Multilocus Sequence Typing (MLST), Pulsed-Field Gel Electrophoresis (PFGE), and serotyping. The genetic profiles of vaccine working and master seeds showed no important change(s) in frequencies of fingerprint types investigated in the vaccine strains and had homogeneity in PFGE method where the clinical isolates showed diversity in genetic profile. Serotyping method showed that all of 10 clinical strains expressing Fim 3. In MLST study, seven housekeeping genes including adk, pgm, fum C, tyr B, gly A, pep A and icd were analyzed which showed no changes in the sequence of clinical and vaccine strains with 100% homology. The genes that cause pathogenicity like ptxC, tcfA and fhaB were also evaluated and the results illustrated heterogeneity in the vaccine and circulating strains.     

锥—46抑制[^3H]次黄嘌呤掺入伊氏锥虫核酸的研究

用液体闪烁计数法对锥—46的抗锥虫作用的机理做了初步研究。发现T-46与Berenil很相似,均可显著抑制[~3H]次黄嘌呤掺入伊氏锥虫,抑制作用与浓度及时间呈正相关。T-46和Berenil对DNA合成的IC_(60)分别为1.33和1.73μg·ml~(-1)。本实验还提示T-46抗锥虫作用可能与损伤DNA模板有关。     

MDCC—MSB1培养基上清液中DNA活性的定性研究

将 Ｍ Ｄ Ｃ Ｃ Ｍ Ｓ Ｂ１ ４８ 小时培养物 １０００ｒ／ｍ ｉｎ 离心的上清液分别用 Ｒ Ｎ Ａ 酶、 Ｄ Ｎ Ａ 酶和蛋白酶 Ｋ 处理后,进行体外试验。结果表明,只有 Ｄ Ｎ Ａ 酶处理后的上清液失去了体外抑制 Ｍ Ｄ Ｖ“８１４”增殖的作用。将该上清液 １００００ｒ／ｍ ｉｎ 离心所得的沉淀分别用上述酶处理后进行体内试验。结果表明,只有 Ｄ Ｎ Ａ 酶处理的样品失去了体内促进 Ｍ Ｄ Ｖ 京１ 株致瘤的作用。同时,电泳分析结果证明,该上清液中确实存在 Ｄ Ｎ Ａ。     

减蛋综合征病毒末端片段的克隆及细胞内DNA重组

采用９～１０日龄非免疫鸭胚增殖的减蛋综合征病毒（ＥＤＳＶ）ＡＡ－２毒株,经差速离心法浓缩纯化后,提取病毒基因组ＤＮＡ。采用碱变性法除去病毒基因组共价结合的末端蛋白（ＴＰ）。用限制性内切酶ＨｉｎｄⅢ水解纯化的ＥＤＳＶ基因组ＤＮＡ。经低熔点琼脂糖凝胶电泳后,回收Ｃ、Ｄ、Ｅ片段。克隆到ｐＵＣ１９载体的ＨｉｎｄⅢ和ＳｍａⅠ双酶切位点及ＨｉｎｄⅢ位点上,经蓝白斑筛选和单、双酶切鉴定,获得了ｐＵＨＣ、ｐＵＨＤ、ｐＵＨＥ重组质粒,其中ｐＵＨＣ含有末端片段。将ＥＤＳＶＳａｌⅠ水解产生并回收的大片段与ｐＵＨＣ在９５℃水浴中变性,６５℃复性后,用钙离子介导法,共转染５０％～７０％的单层鸭胚成纤维细胞,转染后３６ｈ开始产生细胞病变（ＣＰＥ）。４８ｈ后将病变细胞反复冻融,经尿囊腔接种９～１０日龄鸭胚,回收的尿囊液能凝集鸡红细胞,这种血凝性能被ＥＤＳＶ高免血清抑制,电镜下观察到腺病毒样颗粒。     

水貂Mustla Vison微量血DNA的提取与纯化

作者通过采取活体水貂少量血液 ( 5 0 μL) ,利用蛋白酶K消化 ,酚、氯仿法抽取DNA ,结果测量获得的数据和曲线表明 :用 5 0～ 5 0 0 μL冻存血可以获得具有一定纯度和数量的DNA ,完全可以满足RAPD分析的PCR反应所需     

Genetic Structure of Severe Combined Immunodeficiency Carrier Horses in Morocco Inferred by Microsatellite Data

A total of 17 microsatellite deoxyribonucleic acid loci used routinely for horse parentage control were used to evaluate genetic diversity among normal Arabian horses and severe combined immunodeficiency (SCID) carrier Arabian horses (ArS) and normal Arab-Barb horses and SCID carrier Arab-Barb horses (ArbeS). On the basis of the genotype of 186 horses, mean allelic diversity was estimated as 6.82, 5.53, and 6.7059 in normal Arabian horses, ArS, and for both groups of Arab-Barb horses, respectively. Five specific alleles were observed in ArS and ArbeS, with one common with ArS at HMS6, whereas five alleles common between ArS and ArbeS had a high frequency. Expected and observed heterozygosity showed great heterogeneity in the population studied and were similar or higher when compared with other studies on Arabian horses. Coefficient of gene differentiation G_st of Nei associated with Nei’s genetic distance and multivariate correspondence analysis indicated a possible differentiation between the studied populations when analyzed separately according to breed. Probability of assignment of a horse to a specific group was assessed using a full and partial Bayesian approach. In all, 80.6% of Arab horses and 78.2% of Arab-Barb horses were assigned properly with a partial Bayesian test, which provided better results than the full one. These findings will be useful for identification of SCID carrier horses by using the microsatellite deoxyribonucleic acid loci used routinely for horse parentage control in our laboratory.