An evaluation of the pesera soil erosion model and its application to a case study in Zakynthos, Greece

Abstract. The Pan‐European Soil Erosion Risk Assessment (pesera ) model was evaluated using existing soil erosion data collected under various types of climate, vegetation, landscape and soil conditions. The data used represent a variety of typical Mediterranean land uses such as winter wheat, vines, olives and bare, stony land prevailing in hilly areas. Using this data, the model was calibrated for sediment transport by overland flow and results compared to measured soil erosion values from runoff plots and a watershed on a monthly basis. The performance of the model was assessed statistically, showing that it can be satisfactorily used for predicting soil erosion rates under the conditions included in the study. The overall model estimate including all the available experimental data was 0.69 t ha^?1 yr^?1 with a maximum error of 1.49 t ha^?1 yr^?1. After validation, the model was applied to a small watershed (60 ha) of great ecological importance for the sea turtle Caretta caretta. For this purpose, soil and vegetation maps were compiled from all the necessary data for applying the model. The model was run for three years using daily data from an existing nearby meteorological station. The predicted and measured soil erosion rates for a 7‐month period were 0.31 t and 0.18 t, respectively. Application of the model to each mapping unit showed the over‐riding importance of land use for sediment generation under the given climatic conditions. Bare land, occupying 5.5% of the watershed area, generated up to 69% of the total sediments estimated for the watershed. It is concluded that the pesera model can be used as a regional diagnostic tool under a range of soil, topographic and climatic conditions for identifying the best land use type and vegetation cover to protect hilly areas from soil erosion. The calculated overall root mean square error for the model is 0.06 t ha^?1 yr^?1, compared to a soil erosion rate of 0.04 t ha^?1 yr^?1, which can be tolerated for protecting the area for the sea turtle.     

不同调酸剂对种植玉米红壤微生物群落的影响

为研究红壤微生物丰度和群落组成对不同调酸剂的响应,分析影响碳/氮关键代谢过程微生物的变化,通过盆栽实验,设置不施肥（CK）、钙镁复合剂（L）、钙镁复合剂配施猪粪（ML）和钙镁复合剂配施秸秆（SL）4个处理,采用宏基因组测序技术,分析土壤细菌、真菌和古菌以及碳/氮代谢关键过程微生物。结果表明：L、ML和SL处理显著提高土壤pH值和交换性钙/镁,显著降低土壤交换性酸。调酸剂增加了细菌优势菌中的变形菌门相对丰度,降低了绿弯菌门和酸杆菌门相对丰度;降低了真菌优势菌中的毛霉菌门相对丰度;增加了古菌优势菌中的广古菌门和深古菌门的相对丰度,降低了奇古菌门的相对丰度。冗余分析结果显示,速效钾是影响土壤细菌和真菌群落结构的主要环境因子,土壤pH和有机碳是影响土壤真菌和古菌群落结构组成的关键因子。碳代谢过程的贡献度方面,变形菌门的贡献度在SL处理中最高,放线菌门和芽单胞菌门的贡献度在ML处理中最高。氮代谢过程中,各处理绿弯菌门对硝化作用的贡献率均超过80%。调酸降低了绿弯菌门和酸杆菌门在反硝化与硝酸盐异化还原过程中的贡献度,L与SL处理的变形菌门贡献度低于ML处理,而ML处理的放线菌门贡献度高于L与SL处...     

玉米秸秆水热生物炭施用对土壤重金属Cd生物有效性和微生物群落的影响

为了探究玉米秸秆水热生物炭（简称水热炭）施用对镉（Cd）污染土壤的修复效果及作用机制,通过盆栽试验,分析了不同水热炭在不同添加率下（1%和 3%）对土壤 Cd生物有效性和作物吸收的影响,并探究了不同条件下的微生物群落结构。结果表明：与对照相比,水热炭施用显著提高了土壤有机质和溶解性有机碳含量,土壤中二乙烯三胺五乙酸提取的Cd（DTPA-Cd）和油菜叶片 Cd含量分别降低了 5.01%~20.98%和 10.82%~34.16%。提高水热温度和水热炭添加率有助于降低土壤 DTPA-Cd含量。此外,施用水热炭显著增强了根际土壤细菌的多样性和丰度,且明显改变了微生物群落结构。与对照组相比,施用水热炭显著降低了根际土壤中Actinobacteriota的相对丰度,提高了Proteobacteria和Bacteroidota的相对丰度。冗余分析表明土壤溶解性有机碳含量是影响根际土壤细菌群落结构的关键因素。因此,水热炭对重金属污染土壤有很大的修复潜力,但其对土壤重金属的长期效应有待进一步研究。     

不同轮作模式对稻田土壤肥力和微生物群落结构的影响

为了探索不同水稻轮作模式对稻田土壤微生物群落结构的影响,以及与土壤养分供给的关系,本研究采用高通量测序技术对3种不同轮作模式下（水稻-小麦轮作、水稻-紫云英轮作、水稻-休耕）土壤细菌和真菌的群落结构变化进行分析,并进一步探讨了微生物群落结构与土壤养分含量之间的相互关系。结果表明：水稻-紫云英轮作模式能够明显改善稻田土壤的综合肥力,紫云英连续翻压还田后显著提高了土壤中总氮（TN）和有效氮（AN）的含量。土壤微生物群落结构方面,不同种植模式对细菌群落结构的影响大于真菌。水稻-紫云英轮作模式中优势菌群如酸杆菌门（Acidobacteriota）和子囊菌门（Ascomycota）等的富集有助于促进土壤生态系统的养分循环与生态健康。不同种植模式条件下土壤养分的变化如TN、AN、总钾（TK）及速效钾（AK）等可能是导致土壤细菌和真菌群落结构发生变化的主要驱动因素。稻田土壤中细菌群落结构对于土壤养分变化的敏感性要高于真菌。综合来看,水稻-紫云英轮作模式是更加适合水稻生态可持续栽培的种植模式,能够明显改善稻田土壤的综合肥力和土壤微生态环境。     

矿区生态监测的地理加权遥感生态指数构建及评价

矿区生态是陆地生态系统的重要组成部分,准确监测矿区生态对保护生态环境、维持生态平衡具有重要意义。遥感技术为矿区生态监测提供了有效手段,针对遥感生态指数（remote sensing ecological index,RSEI）在矿区生态监测中存在监测精度低、针对性弱和指标权重空间上均一化问题,该研究对RSEI进行了改进。首先,考虑矿区特殊的生态成因,在绿度、热度、湿度、干度的基础上加入煤尘污染因子构成矿区遥感生态指数;然后,利用地理加权主成分分析法确定各指标的空间权重,构建了地理加权遥感生态指数（geographically weighted-remote sensing ecological index,GW-RSEI）;最后,以山西省大同煤田为例,基于多期遥感影像对GW-RSEI在矿区生态监测中的有效性、适用性进行了验证。结果表明：GW-RSEI能准确捕捉矿区大气中的煤尘污染,从整体和局部尺度实现了矿区生态的精准监测,有效提高了矿区生态监测的精度;地理加权主成分分析法能够明确表征矿区生态的空间异质性和生态环境变化的空间连续性;2000—2020年大同煤田的GW-RSEI均值分别为0.51、0.48、0.46、0.59、0.56,整体生态环境经历了先恶化后改善的过程,其东南部生态环境变化趋势与整体一致,而西北部生态环境呈现先改善后恶化的变化趋势。研究成果为准确监测矿区生态提供了一种更加科学、有效的方法。     

毛竹入侵对落叶阔叶林土壤理化性质和胞外酶活性的影响

【目的】研究毛竹（Phyllostachys edulis）入侵亚热带北缘落叶阔叶林对土壤理化性质和土壤胞外酶活性的影响,为探究毛竹入侵条件下森林生态系统养分循环过程与固碳潜力及森林的毛竹入侵治理提供科学依据。【方法】在毛竹入侵样带上,选择落叶阔叶林（麻栎林Quercus acutissima）、竹阔混交林（混交林）和毛竹林3种林分为研究对象,采集其林下地表0~10 cm土壤,进行土壤理化性质和土壤酶活性的测定,包括土壤pH、含水率和有机碳、全氮、NH⁺₄-N、NO^-₃-N、全磷、有效磷含量,以及β-葡糖苷酶（BG）、β-N-乙酰氨基葡萄糖苷酶（NAG）、亮氨酸氨基肽酶（LAP）、酸性磷酸酶（AcP）、酚氧化物酶（POX）、过氧化物酶（PER）活性和酶计量(V_C/N、V_N/P、V_C/P),比较不同林分的土壤指标。【结果】①随着毛竹入侵,毛竹林土壤pH值和含水率显著增大,且与混交林、麻栎林差异显著（P<0.05）;其土壤有机碳、NO^-₃-N和全氮含量显著下降（P<0.05）,NH⁺₄-N、有效磷和全磷含量与混交林、麻栎林差异不显著。②土壤碳、氮和磷循环相关的水解酶（BG、NAG+LAP、AcP）活性均随毛竹入侵呈下降趋势,氧化酶（POX、PER）活性变化趋势与之相反;酶计量分析表明,毛竹林土壤的V_N/P显著低于混交林和麻栎林（P＜0.05）,而V_C/N、V_C/P在不同林分间差异不显著。③酶活性的矢量分析表明,毛竹林土壤微生物的磷限制程度高于混交林和麻栎林。④土壤水解酶活性与土壤有机碳、NO^-₃-N、全氮、有效磷含量或pH有显著相关关系,氧化酶活性与土壤性质相关性总体不显著。【结论】毛竹林取代落叶阔叶林（麻栎林）后,土壤有机碳和养分含量及相关水解酶活性降低,不利于原有落叶阔叶林土壤碳库与养分库的保存。     

Molecular cloning and functional analysis of duck Toll-like receptor 5

Toll-like receptor 5 (TLR5) is responsible for the recognition of bacterial flagellin in vertebrates. In this study, we cloned the single-exon TLR5 gene of the Maya breed of Common Shelduck (Tadorna tadorna). The TLR5 open reading frame is 2580 bp in length and encodes an 859-amino acid protein. The putative amino acid sequence of duck TLR5 consisted of a signal peptide sequence, 11 leucine-rich repeat domains, a leucine-rich repeat C-terminal domain, a transmembrane domain, and an intracellular Toll-interleukin-1 receptor domain. The duck TLR5 gene was highly expressed in the lung, bone marrow, spleen, and liver; moderately expressed in kidney, small intestine, large intestine, and brain. A plasmid expressing duck TLR5 was constructed and transfected into HEK293T cells, and expression was confirmed by indirect immunofluorescence assay. HEK293T cells transfected with duck TLR5- and NF-κB-luciferase-containing plasmids significantly responded to flagellin from Salmonella typhimurium, indicating that it is a functional TLR5 homolog.     

Genetic characterization by fluorescent AFLP of Pseudomonas savastanoi pv. savastanoi strains isolated from different host species

The genetic diversity of 71 Pseudomonas savastanoi pv. savastanoi strains isolated from different host species and from diverse geographical regions was determined by fluorescent amplified fragment length polymorphism (f-AFLP) analysis. The study was carried out using three different selective primer combinations. Strains of P. syringae pv. syringae , P. syringae pv. phaseolicola , P. syringae pv. glycinea , P. syringae pv. tagetis and P. amygdali were also included as outgroups. Based on cluster analysis of f-AFLP data, all P. savastanoi pv. savastanoi strains showed a high degree of similarity, grouping in a cluster and forming a taxon clearly separate from outgroup strains. AFLP analyses failed to support placing strains of P. savastanoi pv. savastanoi , P. syringae pv. phaseolicola and P. syringae pv. glycinea in the same species. Strains of P. savastanoi pv. savastanoi formed subclusters that correlated with the host species. Strains identified within these subclusters were related to the geographical region where the strains were isolated. Strains of P. savastanoi pv. savastanoi from olive were divided into two subclusters. Strains from oleander were differentiated from those from ash and were divided into two additional subclusters, distinct from olive strains. Three strains isolated from jasmine showed a high level of similarity among them but, at a lower Dice similarity coefficient, were linked to a subcluster including olive strains. Finally, two strains isolated from privet were similar to strains from olive and were included in the same subcluster.     

Short term soil priming effects and the mineralisation of biochar following its incorporation to soils of different pH

The aim of this work was to determine the magnitude of the priming effect, i.e. short-term changes in the rate (negative or positive) of mineralisation of native soil organic carbon (C), following addition of biochars. The biochars were made from Miscanthus giganteus, a C4 plant, naturally enriched with ¹³C. The biochars were produced at 350 °C (biochar350) and 700 °C (biochar700) and applied with and without ryegrass as a substrate to a clay-loam soil at pH 3.7 and 7.6. A secondary aim was to determine the effect of ryegrass addition on the mineralisation of the two biochars.After 87 days, biochar350 addition caused priming effects equivalent to 250 and 319 μg CO₂-C g⁻¹ soil, in the low and high pH soil, respectively. The largest priming effects occurred at the start of the incubations. The size of the priming effect was decreased at higher biochar pyrolysis temperatures, which may be a way of controlling priming effects following biochar incorporation to soil, if desired. The priming effect was probably induced by the water soluble components of the biochar. At 87 days of incubation, 0.14% and 0.18% of biochar700 and 0.61% and 0.84% of biochar350 were mineralized in the low and high pH soil, respectively. Ryegrass addition gave an increased biochar350 mineralisation of 33% and 40%, and increased biochar700 at 137% and 70%, in the low and high pH soils, respectively. Certainly, on the basis of our results, if biochar is used to sequester carbon a priming effect may occur, increasing CO₂-C evolved from soil and decreasing soil organic C. However, this will be more than compensated for by the increased soil C caused by biochar incorporation. A similar conclusion holds for accelerated mineralisation of biochar due to incorporation of fresh labile substrates. We consider that our results are the first to unequivocally demonstrate the initiation, progress and termination of a true positive priming effect by biochar on native soil organic C.     

Spoligotype diversity of Mycobacterium bovis and Mycobacterium caprae animal isolates

The genetic diversity of 283 Mycobacterium bovis (M. bovis) and 10 Mycobacterium caprae (M. caprae) strains, isolated between 2002 and 2007 from cattle, goat, red deer and wild boar from six different geographical regions of Portugal was investigated by spoligotyping. The technique showed a good discriminatory power (Hunter-Gaston Index, h=0.9) for the strains, revealing 29 different patterns. One pattern (SB0121) was clearly predominant, accounting for 26.3% of the isolates; ten patterns, representing 20.7% of the isolates, had never been reported previously. Multiple spoligotypes were detected in thirteen cattle and one goat herd, most of which were found in beef cattle and extensive management regions, suggesting different infection sources. With the exception of two spoligotypes, those in wildlife species were also found in domestic species.