Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

Here, we examine soil-borne microbial biogeography as a function of the features that define an American Viticultural Area (AVA), a geographically delimited American wine grape-growing region, defined for its distinguishing features of climate, geology, soils, physical features (topography and water), and elevation. In doing so, we lay a foundation upon which to link the terroir of wine back to the soil-borne microbial communities. The objective of this study is to elucidate the hierarchy of drivers of soil bacterial community structure in wine grape vineyards in Napa Valley, California. We measured differences in the soil bacterial and archaeal community composition and diversity by sequencing the fourth variable region of the small subunit ribosomal RNA gene (16S V4 rDNA). Soil bacterial communities were structured with respect to soil properties and AVA, demonstrating the complexity of soil microbial biogeography at the landscape scale and within the single land-use type. Location and edaphic variables that distinguish AVAs were the strongest explanatory factors for soil microbial community structure. Notably, the relationship with TC and TN of the <53 μm and 53–250 μm soil fractions offers support for the role of bacterial community structure rather than individual taxa on fine soil organic matter content. We reason that AVA, climate, and topography each affect soil microbial communities through their suite of impacts on soil properties. The identification of distinctive soil microbial communities associated with a given AVA lends support to the idea that soil microbial communities form a key in linking wine terroir back to the biotic components of the soil environment, suggesting that the relationship between soil microbial communities and wine terroir should be examined further.     

有机改良剂对温室土壤及番茄质量的影响

研究了优培-海藻生物有机肥(Y)、微生物菌肥(W)和腐植酸有机肥对日光温室土壤的理化性质、有效态微量元素含量、酶活性以及番茄品质等方面的影响,旨在探索快速、简易且廉价的土壤改良方法,为日光温室土壤改良及有机蔬菜生产提供理论依据。结果表明,不同土壤改良剂对土壤p H无显著影响,在番茄生育期内土壤p H值始终在7.0以上,没有出现酸化问题;拉秧后,除中量腐植酸有机肥(FM)外,其他各处理均能有效降低土壤EC值并达到极显著水平;各处理对提升有效态Mn、Zn和Fe含量的效果不显著,其中,仅高量腐植酸有机肥处理(FH)能同时提高开花结果盛期0~20 cm和20~40 cm土层的有效态Zn含量,与CK相比,分别增加10.8%和13.2%;不同土壤改良剂均可提高土壤脲酶和蔗糖酶活性;不同土壤改良剂对碱性磷酸酶的酶活性影响较小;微生物菌肥对酸性磷酸酶和过氧化氢酶的酶活性影响相对明显;不同土壤改良剂均能提高番茄可溶性固形物、可溶性糖、可滴定酸和维生素C的含量,其中,中量腐植酸有机肥处理提高了番茄的糖酸比。土壤改良剂可有效改善日光温室土壤特性及番茄品质。     

渗灌次数对西北荒漠灌区紫花苜蓿栽培草地土壤化学性质的影响

渗灌是节水农业中最有效的措施之一,有利于作物产量和水分利用率的提高。本研究以甘肃省金昌市杨柳青公司紫花苜蓿‘艾迪娜’(M.sativa L.‘Aidina’)试验地渗灌区土壤为研究对象,通过田间试验与室内分析相结合的方法,研究不同渗灌次数(0次、1次、2次、3次)对苜蓿出苗期不同土层深度及管距位置土壤化学性质的影响。结果表明:在0~10cm和10~20cm土层深度,pH最高值均出现在管上,较CK升高了8.21%和8.68%,最低值都出现在管中,较CK降低了2.70%和3.37%;2水和3水均能显著提高不同土层深度及不同管距位置的pH值(P0.05)。不同渗灌次数,不同土层深度管中的水溶性盐含量均高于管上和管近,且最大值都出现在1水,较CK分别增加了83.26%和96.34%;不同土层深度,2水的水溶性盐含量平均值都低于1水和3水;不同渗灌次数,不同土层深度,钠离子和钾离子含量的最大值均出现在管中。不同渗灌次数,不同土层深度,管中的水解性氮含量均高于管上和管近,最大值都出现在1水管中,较CK分别增加了112.68%和34.48%。随着渗灌次数的增多,0~10cm土层深度不同管距的速效磷含量均呈现下降趋势,速效钾含量均呈现上升趋势。随着灌水次数的增加,不同土层深度及管位的有机质含量均呈现先上升后下降的趋势,2水显著提高了各位置土壤有机质含量(P0.05)。综上所述,渗灌2次比较好,土壤水溶性盐含量较低且有机质含量较高,利于苜蓿幼苗生长。     

皆伐与不同迹地清理方式对杉木土壤化学性质的影响

以福建将乐国有林场杉木人工林为研究对象,按照立地条件相一致的原则,利用空间代替时间的方法设置皆伐前、皆伐1个月、皆伐3个月、整地1 a、整地3 a、炼山1 a、炼山3 a等不同条件下总计21块标准样地,旨在研究皆伐与不同迹地清理方式对杉木林地土壤化学性质的影响。经过对标准地土壤化学性质测定,结合显著性差异法对试验数据进行处理分析。结果表明:皆伐后土壤化学性质趋于恶化,不同迹地清理方式土壤化学性质差异显著,带状整地法在短期1 a内对土壤化学性质的改善显著强于炼山法,并且炼山3 a后土壤化学性质基本恢复至炼山前,总体看来皆伐后带状整地的迹地清理方式优于炼山法。     

Establishment of macro-aggregates and organic matter turnover by microbial communities in long-term incubated artificial soils

The study of interactions between minerals, organic matter (OM) and microorganisms is essential for the understanding of soil functions such as OM turnover. Here, we present an interdisciplinary approach using artificial soils to study the establishment of the microbial community and the formation of macro-aggregates as a function of the mineral composition by using artificial soils. The defined composition of a model system enables to directly relate the development of microbial communities and soil structure to the presence of specific constituents. Five different artificial soil compositions were produced with two types of clay minerals (illite, montmorillonite), metal oxides (ferrihydrite, boehmite) and charcoal incubated with sterile manure and a microbial community derived from a natural soil. We used the artificial soils to analyse the response of these model soil systems to additional sterile manure supply (after 562 days). The artificial soils were subjected to a prolonged incubation period of more than two years (842 days) in order to take temporally dynamic processes into account. In our model systems with varying mineralogy, we expected a changing microbial community composition and an effect on macro-aggregation after OM addition, as the input of fresh substrate will re-activate the artificial soils. The abundance and structure of 16S rRNA gene and internal transcribed spacer (ITS) fragments amplified from total community DNA were studied by quantitative real-time PCR (qPCR) and denaturing gradient gel electrophoresis (DGGE), respectively. The formation of macro-aggregates (>2 mm), the total organic carbon (OC) and nitrogen (N) contents, the OC and N contents in particle size fractions and the CO₂ respiration were determined. The second manure input resulted in higher CO₂ respiration rates, 16S rRNA gene and ITS copy numbers, indicating a stronger response of the microbial community in the matured soil-like system. The type of clay minerals was identified as the most important factor determining the composition of the bacterial communities established. The additional OM and longer incubation time led to a re-formation of macro-aggregates which was significantly higher when montmorillonite was present. Thus, the type of clay mineral was decisive for both microbial community composition as well as macro-aggregation, whereas the addition of other components had a minor effect. Even though different bacterial communities were established depending on the artificial soil composition, the amount and quality of the OM did not show significant differences supporting the concept of functional redundancy.     

Synergistic effects of soil microstructure and bacterial EPS on drying rate in emulated soil micromodels

Microbial extracellular polymeric substances (EPS) have been shown to alter soil moisture retention and to improve seedling survival and plant growth at the bulk scale. The mechanisms of EPS-mediated water retention include reversible swelling of the cross-linked polymer matrix and the promotion of an aggregated soil structure. However, the effects of EPS on water retention have never been directly observed at the pore scale. Here, emulated soil micromodels were developed to directly observe the effects of physical, chemical, and biological factors on pore-scale water retention. In this demonstration, a pseudo-2D pore structure was created to represent physical features of a fine sandy loam. Replicate micromodels were initially saturated with suspensions of different soil bacteria, and pore-scale air infiltration was directly imaged over time. External evaporativity was held constant through the use of a custom constant-humidity environmental chamber. Micromodels filled with suspensions of highly mucoid Sinorhizobium meliloti retained moisture about twice as long as physically identical micromodels filled with suspensions of non-mucoid S. meliloti. Relative drying rates in six replicate experiments ranged from 1.1 to 2.5 times slower for mucoid suspensions. Patterns of air infiltration were similar but not identical across replicates. The results suggest that pore fluid EPS and micromodel geometry act together to limit evaporation at pore throats. Advantages of the micromodel approach include direct observation of pore-scale dynamic process, and the ability to systematically replicate complex physical structures. These abilities will enable users to screen benefits from different structures and from microbial compositions, and build predictive understanding of the overall function of microbe-habitat systems.     

家庭绿化植物种类选择

通过对家庭居室不同空间特点的分析,根据家庭绿化的趋势,从绿化植物材料的适应性、观赏性、生态性和经济性方面探讨了家庭绿化材料的选择,以期为居室绿化提供参考依据。     

Soil fauna across Central European sandstone ravines with temperature inversion: From cool and shady to dry and hot places

Sandstone massifs with their deep ravines or gorges offer the instructive opportunity to study the response of organisms to steep environmental gradients. In 2008–2010, many groups of soil fauna were studied along transects across three ravines in the Bohemian Switzerland National Park (north-western Czech Republic), a part of the Elbe Sandstone Massif. Each transect included five sampling positions: two opposite edges, two opposite mid-slope positions, and the ravine bottom. The ravines had a specific microclimate characterized by temperature inversion. In general, the cooler and more humid ravine bottoms had also less acid soil with lower carbon content but enriched by litter of deciduous trees and herbs. The other transect positions were characterized by spruce (mid-slopes) and pine (edges) stands with mor humus, exposed to drought in the upper parts. The soil animal communities (identified to species level) differed substantially in dependence on their position along the transects. Ravine bottoms hosted a diverse soil fauna, including a rich macrofauna. The thick duff layer of acid soils on the slopes and edges hosted a poorer fauna but supported high densities of important decomposers such as enchytraeids, oribatid mites and microbivorous nematodes. In general, these were higher on the slopes, presumably due to the drought exposure of the edges. Vertical position in the ravine and soil pH were the most important factors explaining community composition. This confirmed that the area's high geomorphological diversity, leading to steep microclimatic gradients and heterogenous soil conditions, is a major cause of its high biodiversity. A shift in community structure in the lower parts of the ravines, observed after the first half of the study period, was possibly caused by summer flash floods. An increased frequency and severity of dry spells and flash floods due to heavy rains, predicted by relevant climate warming scenarios, will probably have an detrimental effect on the ravines'soil fauna.     

Response of the soil fungal community to multi-factor environmental changes in a temperate forest

Both environmental and climatic changes are known to influence soil microbial biomes in terrestrial ecosystems. However, there are limited data defining the interactive effects of multi-factor environmental disturbances, including N-deposition, precipitation, and air temperature, on soil fungal communities in temperate forests. A 3-year outdoor pot experiment was conducted to examine the temporal shifts of soil fungal communities in a temperate forest following N-addition, precipitation and air temperature changes. The shifts in the structure and composition of soil fungal communities were characterized by denaturing gradient gel electrophoresis and DNA sequencing. N-addition regimen induced significant alterations in the composition of soil fungal communities, and this effect was different at both higher and lower altitudes. The response of the soil fungal community to N-addition was much stronger in precipitation-reduced soils compared to soils experiencing enhanced precipitation. The combined treatment of N-addition and reduced precipitation caused more pronounced changes in the lower altitude versus those in the higher one. Certain fungal species in the subphylum Pezizomycotina and Saccharomycotina distinctively responded to N fertilization and soil water control at both altitudes. Redundancy discrimination analysis showed that changes in environmental factors and soil physicochemical properties explained 43.7% of the total variability in the soil fungal community at this forest ecosystem. Variations in the soil fungal community were significantly related to the altitude, soil temperature, total soil N content (TN) and pH value (P < 0.05). We present evidence for the interactive effects of N-addition, water manipulation and air temperature to reshape soil fungal communities in the temperate forest. Our data could provide new insights into predicting the response of soil micro-ecosystem to climatic changes.     

硒肥与钝化材料组配对土壤Cd钝化及稻米Cd消减效果

为了探讨不同硒肥施用方式联合钝化材料对土壤镉钝化和稻米镉消减的效果,采用盆栽试验的方式,选用亚硒酸钠作为硒肥,钙镁磷肥和硅藻土作为钝化材料,设置基施硒肥+钙镁磷肥+硅藻土和叶面喷施硒肥+钙镁磷肥+硅藻土2种方式,研究其不同用量对镉污染酸性稻田土壤修复与安全利用的影响。结果表明：随着施用量的增加,稻米产量增加,基施硒肥产量略高于叶面喷施硒肥,产量差为 2.115 g/pot,与对照(CK)相比,基施0.28%钙镁磷肥+0.12%硅藻土+0.004‰硒(T3)能够提高1.68倍的稻米产量;随着施用量的增加,pH升高,有效Cd降低,有机质与CEC变化不大;基施硒肥与叶面喷施硒肥处理对土壤pH、有机质与CEC差异不显著,但基施硒肥处理有效Cd含量略低于叶面喷施硒肥处理,T3对土壤Cd的钝化效果最佳;随着基施硒肥用量的增加,稻米Cd含量降低,随着叶面喷施硒肥用量的增加,稻米Cd含量先降低后升高,基施硒肥处理对稻米Cd的消减程度强于叶面喷施硒肥处理,相差 0.021 mg/kg,与对照(CK)相比,T3处理稻米Cd降低0.063 mg/kg。可见,硒对调控稻米镉累积具有重要作用,且基施硒肥强于叶面喷施。综上所述,基施0.28%钙镁磷肥+0.12%硅藻土+0.004‰硒对土壤Cd钝化与稻米Cd消减的效果最佳,值得在镉污染稻田推广应用。