Establishment of macro-aggregates and organic matter turnover by microbial communities in long-term incubated artificial soils

The study of interactions between minerals, organic matter (OM) and microorganisms is essential for the understanding of soil functions such as OM turnover. Here, we present an interdisciplinary approach using artificial soils to study the establishment of the microbial community and the formation of macro-aggregates as a function of the mineral composition by using artificial soils. The defined composition of a model system enables to directly relate the development of microbial communities and soil structure to the presence of specific constituents. Five different artificial soil compositions were produced with two types of clay minerals (illite, montmorillonite), metal oxides (ferrihydrite, boehmite) and charcoal incubated with sterile manure and a microbial community derived from a natural soil. We used the artificial soils to analyse the response of these model soil systems to additional sterile manure supply (after 562 days). The artificial soils were subjected to a prolonged incubation period of more than two years (842 days) in order to take temporally dynamic processes into account. In our model systems with varying mineralogy, we expected a changing microbial community composition and an effect on macro-aggregation after OM addition, as the input of fresh substrate will re-activate the artificial soils. The abundance and structure of 16S rRNA gene and internal transcribed spacer (ITS) fragments amplified from total community DNA were studied by quantitative real-time PCR (qPCR) and denaturing gradient gel electrophoresis (DGGE), respectively. The formation of macro-aggregates (>2 mm), the total organic carbon (OC) and nitrogen (N) contents, the OC and N contents in particle size fractions and the CO₂ respiration were determined. The second manure input resulted in higher CO₂ respiration rates, 16S rRNA gene and ITS copy numbers, indicating a stronger response of the microbial community in the matured soil-like system. The type of clay minerals was identified as the most important factor determining the composition of the bacterial communities established. The additional OM and longer incubation time led to a re-formation of macro-aggregates which was significantly higher when montmorillonite was present. Thus, the type of clay mineral was decisive for both microbial community composition as well as macro-aggregation, whereas the addition of other components had a minor effect. Even though different bacterial communities were established depending on the artificial soil composition, the amount and quality of the OM did not show significant differences supporting the concept of functional redundancy.     

Synergistic effects of soil microstructure and bacterial EPS on drying rate in emulated soil micromodels

Microbial extracellular polymeric substances (EPS) have been shown to alter soil moisture retention and to improve seedling survival and plant growth at the bulk scale. The mechanisms of EPS-mediated water retention include reversible swelling of the cross-linked polymer matrix and the promotion of an aggregated soil structure. However, the effects of EPS on water retention have never been directly observed at the pore scale. Here, emulated soil micromodels were developed to directly observe the effects of physical, chemical, and biological factors on pore-scale water retention. In this demonstration, a pseudo-2D pore structure was created to represent physical features of a fine sandy loam. Replicate micromodels were initially saturated with suspensions of different soil bacteria, and pore-scale air infiltration was directly imaged over time. External evaporativity was held constant through the use of a custom constant-humidity environmental chamber. Micromodels filled with suspensions of highly mucoid Sinorhizobium meliloti retained moisture about twice as long as physically identical micromodels filled with suspensions of non-mucoid S. meliloti. Relative drying rates in six replicate experiments ranged from 1.1 to 2.5 times slower for mucoid suspensions. Patterns of air infiltration were similar but not identical across replicates. The results suggest that pore fluid EPS and micromodel geometry act together to limit evaporation at pore throats. Advantages of the micromodel approach include direct observation of pore-scale dynamic process, and the ability to systematically replicate complex physical structures. These abilities will enable users to screen benefits from different structures and from microbial compositions, and build predictive understanding of the overall function of microbe-habitat systems.     

Soil fauna across Central European sandstone ravines with temperature inversion: From cool and shady to dry and hot places

Sandstone massifs with their deep ravines or gorges offer the instructive opportunity to study the response of organisms to steep environmental gradients. In 2008–2010, many groups of soil fauna were studied along transects across three ravines in the Bohemian Switzerland National Park (north-western Czech Republic), a part of the Elbe Sandstone Massif. Each transect included five sampling positions: two opposite edges, two opposite mid-slope positions, and the ravine bottom. The ravines had a specific microclimate characterized by temperature inversion. In general, the cooler and more humid ravine bottoms had also less acid soil with lower carbon content but enriched by litter of deciduous trees and herbs. The other transect positions were characterized by spruce (mid-slopes) and pine (edges) stands with mor humus, exposed to drought in the upper parts. The soil animal communities (identified to species level) differed substantially in dependence on their position along the transects. Ravine bottoms hosted a diverse soil fauna, including a rich macrofauna. The thick duff layer of acid soils on the slopes and edges hosted a poorer fauna but supported high densities of important decomposers such as enchytraeids, oribatid mites and microbivorous nematodes. In general, these were higher on the slopes, presumably due to the drought exposure of the edges. Vertical position in the ravine and soil pH were the most important factors explaining community composition. This confirmed that the area's high geomorphological diversity, leading to steep microclimatic gradients and heterogenous soil conditions, is a major cause of its high biodiversity. A shift in community structure in the lower parts of the ravines, observed after the first half of the study period, was possibly caused by summer flash floods. An increased frequency and severity of dry spells and flash floods due to heavy rains, predicted by relevant climate warming scenarios, will probably have an detrimental effect on the ravines'soil fauna.     

Response of the soil fungal community to multi-factor environmental changes in a temperate forest

Both environmental and climatic changes are known to influence soil microbial biomes in terrestrial ecosystems. However, there are limited data defining the interactive effects of multi-factor environmental disturbances, including N-deposition, precipitation, and air temperature, on soil fungal communities in temperate forests. A 3-year outdoor pot experiment was conducted to examine the temporal shifts of soil fungal communities in a temperate forest following N-addition, precipitation and air temperature changes. The shifts in the structure and composition of soil fungal communities were characterized by denaturing gradient gel electrophoresis and DNA sequencing. N-addition regimen induced significant alterations in the composition of soil fungal communities, and this effect was different at both higher and lower altitudes. The response of the soil fungal community to N-addition was much stronger in precipitation-reduced soils compared to soils experiencing enhanced precipitation. The combined treatment of N-addition and reduced precipitation caused more pronounced changes in the lower altitude versus those in the higher one. Certain fungal species in the subphylum Pezizomycotina and Saccharomycotina distinctively responded to N fertilization and soil water control at both altitudes. Redundancy discrimination analysis showed that changes in environmental factors and soil physicochemical properties explained 43.7% of the total variability in the soil fungal community at this forest ecosystem. Variations in the soil fungal community were significantly related to the altitude, soil temperature, total soil N content (TN) and pH value (P < 0.05). We present evidence for the interactive effects of N-addition, water manipulation and air temperature to reshape soil fungal communities in the temperate forest. Our data could provide new insights into predicting the response of soil micro-ecosystem to climatic changes.     

Effects of forage type and gibberellic acid on nitrate leaching losses

Nitrogen (N) leaching from soil into water is a significant concern for intensively grazed forage‐based systems because it can cause a decline in water quality and is a risk to human health. Urine patches from grazing animals are the main source of this N. The objective of this study was to quantify the effect that forage type and gibberellic acid (GA) application had on N leaching and herbage N uptake from urine patches on perennial ryegrass–white clover (RGWC), Italian ryegrass and lucerne. A lysimeter study was conducted over 17 months to measure herbage growth, N uptake and N loss to water beneath each of the three forage types with the following treatments: control, urine (700 kg N/ha) and urine with GA (8 g GA active ingredient/ha). Compared with RGWC (205 kg N/ha), N leaching losses were 35.3% lower from Italian ryegrass (133 kg N/ha) and 98.5% higher from lucerne (407 kg N/ha). These differences in leaching loss are likely to be due to winter plant growth and N uptake. During the winter months, Italian ryegrass had higher N uptake, whereas lucerne had lower N uptake, compared with RGWC. The application of GA had no effect on N leaching losses, DM yield or N uptake of forage treated with 700 kg N/ha urine.     

水稻高产、优质和氮高效协同的氮素调控研究

以超级粳稻‘新稻18号’为试验材料,大田条件下,研究不同施氮量(0、232.5、255.0、277.5、300.0、322.5和345.0kg/hm2纯氮水平)对水稻产量、品质及氮肥吸收利用效率的影响,以明确高产、优质和氮高效协同的适宜氮素水平。结果表明,随氮素水平提高,水稻产量、稻米品质和氮肥吸收利用效率均呈先增后降趋势。施氮量为255.0kg/hm2纯氮处理下,产量最高为9 878.11kg/hm2,稻米的糙米率、精米率和整精米率较高,分别为84.81%、72.85%和66.94%,垩白粒率和垩白度较低,分别10.00%和2.86%,氮肥吸收利用效率较高,为41.34%。低氮肥和高氮肥处理,产量、品质和氮肥利用效率相对较低。说明,在适宜的氮肥水平下,水稻高产、优质和氮高效可达到协同一致。     

Single season effects of mixed-species cover crops on tomato health (cultivar Celebrity) in multi-state field trials

Cover crop use can help mitigate the deleterious effects of common cropping practices (e.g., tillage) and is, therefore, an important component of soil health maintenance. While known to be beneficial in the long-term, the short-term effects of cover crops, specifically mixed-species cover crops in organic systems are less clear. Cover crop effects on tomato productivity and disease severity were recorded over three field seasons (2010, 2011 and 2012) at sixteen field sites in three states, Maryland, New York and Ohio (MD, NY and OH), each with distinct soilborne disease pressure. Plots of five state-specific cover crop treatments were established the season prior to tomato production; the resulting plant residue was incorporated the following spring approximately four weeks before tomato planting. Total fruit yields along with early-season shoot height and fresh weight were used to compare treatment effects on productivity. Treatment disease severity ratings relied on natural inoculum. Interestingly, the effect of a single season of cover cropping on total yield was significant in no more than 25% of all site years. Similarly, cover crop effects on tomato disease levels were significant in 0–44% of the sixteen field sites. However, significant field-specific patterns were observed in every state across multiple years for some treatments. For example, in New York in 2010, tomato yields following all mixed cover crops were greater than the single rye cover crop in one field, but this pattern was reversed in the adjacent field. Thus, no general recommendation of a specific cover crop mixture can be made for near-term enhancement of tomato productivity or for reduction of disease. Therefore, growers should focus on location and operation-specific variables when choosing cover crops.     

凸齿镇压器作业过程的运动学与动力学分析

[目的]基于理论推导建立凸齿镇压器作业过程中的运动学和动力学模型。[方法]根据运动学中刚体做平面运动的瞬心定理和牵连运动为平动时质点的加速度合成定理,建立凸齿镇压器在不同工作阶段的运动参数模型;根据动力学中的动量定理、动能定理和冲量定理,建立凸齿镇压器工作状态中所需牵引力、凸齿与地面作用瞬间产生的冲击力和冲击能的参数模型。[结果]凸齿镇压器作业过程中所需的牵引力随着凸齿镇压器的自身质量和滚动阻力系数的增加而增大,而凸齿镇压器转动惯量的增加会降低凸齿镇压器所需牵引力;冲击过程中,凸齿镇压器的牵引速度越大、质量和转动惯量越大、冲击时间越短,则冲击力越大;凸齿镇压器冲击土壤时的冲击能随着凸齿的转动惯量、质量和质心竖直向下移动距离的提高而增加,而随土壤的弹性系数与土壤的塑性变形量的增加而减小。[结论]建立了凸齿镇压器在不同工作状态下运动学及动力学模型,分析并揭示了凸齿镇压器结构参数与运动参数间的相互联系,探索了凸齿镇压器冲击土壤的特征规律,为设计和优化其结构参数和运动参数提供了理论依据。     

Responses of soil nematode community structure to soil carbon changes due to different tillage and cover crop management practices over a nine-year period in Kanto,Japan

The response of the soil food web structure to soil quality changes during long-term anthropogenic disturbance due to farming practices has not been well studied. We evaluated the effects of three tillage systems: moldboard plow/rotary harrow (MP), rotary cultivator (RC), and no-tillage (NT), three winter cover-crop types (fallow, FL; rye, RY; and hairy vetch, HV), and two nitrogen fertilization rates (0 and 100 kg N ha⁻¹ for upland rice, and 0 and 20 kg N ha⁻¹ for soybean production) on changes in nematode community structure. Sixty-nine taxa were counted, total nematode abundance (ALL), bacterial feeders (BAC), predators (PRD), omnivores (OMN), and obligatory root feeders (ORF) were more abundant in NT than in MP and RC, but fungal feeders and facultative root feeders (FFR) were more abundant in RC than in NT and MP. Cover crop also influenced nematode community structure; rye and hairy vetch were always higher in ALL, BAC, FFR, ORF, and OMN than fallow. Seasonal changes in nematode community structure were also significant; in particular, as soil carbon increased, nematode abundance also increased. The relationship between nematode indices and soil carbon was significant only in NT, but not in MP and RC. In NT, with increasing soil carbon, enrichment index and structure index (SI) were positive and significant and channel index was negative. Bulk density was significantly negatively correlated with FFR and ORF. Seasonal difference in nematode community between summer and autumn was larger in an upland rice rotation than in a soybean rotation. Over the nine-year experiment, SI increased not only in NT but also in MP and RC, suggesting that repeated similar tillage inversions in agroecosystems may develop nematode community structures adapted to specific soil environmental conditions. Because NT showed the highest values of both SI and soil carbon, the increase of soil carbon in NT is expected to have a great impact on developing a more diverse nematode community structure.     

Nitrogen use efficiency of cotton (Gossypium hirsutum L.) as influenced by wheat–cotton cropping systems

Wheat–cotton rotations largely increase crop yield and improve resources use efficiency, such as the radiation use efficiency. However, little information is available on the nitrogen (N) utilization and requirement of cotton under wheat–cotton rotations. This study was to determine the N uptake and use efficiency by evaluating the cotton (Gossypium hirsutum L.) N use and the soil N balances, which will help to improve N resource management in wheat–cotton rotations. Field experiments were conducted during 2011/2012 and 2012/2013 growing seasons in the Yangtze River region in China. Two cotton cultivars (Siza 3, mid-late maturity with 130 days growth duration; CCRI 50, early maturity with 110 days growth duration) were planted under four cropping systems including monoculture cotton (MC), wheat/intercropped cotton (W/IC), wheat/transplanted cotton (W/TC) and wheat/direct-seeded cotton (W/DC). The N uptake and use efficiency of cotton were quantified under different cropping systems. The results showed that wheat–cotton rotations decreased the cotton N uptake through reducing the N accumulation rate and shortening the duration of fast N accumulation phase as compared to the monoculture cotton. Compared with MC, the N uptake of IC, TC and DC were decreased by 12.0%, 20.5% and 23.4% for Siza 3, respectively, and 7.3%, 10.7% and 17.6% for CCRI 50, respectively. Wheat–cotton rotations had a lower N harvest index as a consequence of the weaker sink capacity in the cotton plant caused by the delayed fruiting and boll formation. Wheat–cotton rotations used N inefficiently relative to the monoculture cotton, showing consistently lower level of the N agronomic use efficiency (NAE), N apparent recovery efficiency (NRE), N physiological efficiency (NPE) and N partial factor productivity (NPFP), particularly for DC. Relative to the mid–late maturity cultivar of Siza 3, the early maturity cultivar of CCRI 50 had higher N use efficiency in wheat–cotton rotations. An analysis of the crop N balance suggested that the high N excess in preceding wheat (Triticum aestivum L.) in wheat–cotton rotations led to significantly higher N surpluses than the monoculture cotton. The N management for the cotton in wheat–cotton rotations should be improved by means of reducing the base fertilizer input and increasing the bloom application.