土地利用方式对酸性红壤丛枝菌根真菌群落的影响

为了研究土地利用方式对酸性红壤丛枝菌根真菌(arbuscular mycorrhizal fungi, AMF)群落的影响,调查了酸性红壤4种土地利用方式(草地、玉米、花生和大豆)下非根际和根际土壤AMF群落多样性和组成结构。结果表明：土地利用方式显著影响了AMF群落优势属球囊霉属(Glomus)和巨孢囊霉属(Paraglomus)的相对丰度,但是根际作用影响不明显。土地利用方式而非根际作用显著影响了AMF群落香农指数和物种丰富度,其中大豆地表现出最低的香农指数和物种丰富度。土地利用方式和根际作用都显著影响AMF群落组成结构,但是土地利用方式的作用强度明显高于根际作用。球囊霉属主要解释了不同土地利用方式之间的AMF群落组成差异。土壤p H是影响土壤AMF群落结构的最关键因子。因此,土地利用方式比根际作用表现出对酸性红壤AMF群落更大的影响,展现了土地利用变化在影响土壤AMF群落方面的重要作用。     

Resistance of bacterial communities in the potato rhizosphere to disturbance and its application to agroecology

Soil bacteria have the ability to increase agricultural sustainability through the production of biopesticides and biofertilizers. Application of bacteria to field crops often results in sporadic colonization and unpredictable crop performance. This research sought to understand the colonization of the potato (Solanum tuberosum L.) rhizosphere using reciprocal transplants. Plants were grown in a forest or an agricultural soil and then transplanted into either the same soil or the opposite soil. Bacterial communities were profiled using terminal restriction fragment length polymorphism (TRFLP) and analyzed using pairwise comparisons. The results revealed that the bacterial community that colonized the rhizosphere in the first soil remained mostly intact for 30 days after the plants were transplanted into another soil in which the soil bacteria community differed from that found in the original soil. The concept that it may be possible to establish a functional microbiota and to deliver it to an agricultural environment was tested. A nitrogen-fixing bacterial community was established on plants grown under tissue culture conditions and the plants were transplanted into a field soil. Plants inoculated with eight separate nitrogen-fixing communities showed an average fivefold increase in dry biomass when compared to mock-inoculated plants and the microbial profiles remained distinct at 30 days after transplantation. These results demonstrate that the plant rhizosphere is a resistant community and that the first bacterial community that becomes established on the root remains with the plant even when the plant is placed into soil with a vastly different microbiota.     

Organic acid concentrations in soil solution: effects of young coniferous trees and ectomycorrhizal fungi

Organic acids may play a key role in rhizosphere and pedogenic processes. The effects of young trees and ectomycorrhizas on the soil solution concentrations of low molecular weight organic acids (LMWOAs) were studied in soil columns (E horizon) in the presence or absence of Pinus sylvestris and Picea abies with or without three ectomycorrhizal fungi. Several LMWOAs were identified at concentrations ranging from <0.1 to 11 μM. Compared to soil columns without tree seedlings, the presence of non-mycorrhizal or mycorrhizal tree seedlings sometimes resulted in small but statistically significant increases in citrate, formate, malonate and oxalate concentration. The general nutrient concentration and low P had little short-term effect on soil solution organic acid concentrations. The results suggest that biodegradation rather than production may be the major factor regulating soil solution organic acid concentrations.     

Bacterial diversity in cucumber (Cucumis sativus) rhizosphere in response to salinity, soil pH, and boron

Soil salinity is a major factor relating microbial communities to environmental stress in the microbial selection process as stress can reduce bacterial diversity. In the San Joaquin Valley (SJV) of California, the problem of increasing salinity and consequently, decreasing crop productivity, due to reuse of saline drainage water are major concerns. An experiment was conducted in a closed, recirculating volumetric lysimeter system (VLS) consisting of 24 experimental plant growth units to determine the interactive effects of salinity, boron and pH on rhizosphere and non-rhizosphere microbial composition of cucumber (Cucumis sativus L. cv. Seminis Turbo hybrid). Plants in the VLS were irrigated from individual reservoirs containing a modified half-strength Hoagland's nutrient solution combined with salinity, boron (B), and pH treatments. The results indicated that salinity and pH were the most influential factors affecting the growth of plants and the effect of boron on the plant was more severe under slightly acidic conditions. Total bacterial DNA was extracted from rhizosphere and non-rhizosphere samples, and a 236-bp DNA fragment in the V3 region of the small subunit ribosomal RNA genes of eubacteria was amplified. The 16S rRNA and the products were subjected to denaturing gradient gel electrophoresis (DGGE) and sequencing. Analyses of bacterial diversity showed that the effects of salinity, boron, and pH were more severe on the rhizosphere bacterial population during the first week of growing cucumber, with decreasing impacts with plant growth. However, there was no salinity-B-pH interaction effects on plant biomass, but the effects were seen in the number of heterotrophic bacteria in the rhizosphere and on species richness and diversity during week seven of the study. These suggest that the effects of salinity-B-pH interactions may influence microorganisms first before plants and may pose long term effects on soil quality.     

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

In both managed and natural ecosystems, beneficial plant-associated bacteria play a key role in supporting and/or increasing plant health and growth. Plant growth-promoting bacteria (PGPB) can be applied in agricultural production or for the phytoremediation of pollutants. However, because of their capacity to confer plant beneficial effects, efficient colonization of the plant environment is of utmost importance. The majority of plant-associated bacteria derives from the soil environment. They may migrate to the rhizosphere and subsequently the rhizoplane of their hosts before they are able to show beneficial effects. Some rhizoplane colonizing bacteria can also penetrate plant roots, and some strains may move to aerial plant parts, with a decreasing bacterial density in comparison to rhizosphere or root colonizing populations. A better understanding on colonization processes has been obtained mostly by microscopic visualisation as well as by analysing the characteristics of mutants carrying disfunctional genes potentially involved in colonization. In this review we describe the individual steps of plant colonization and survey the known mechanisms responsible for rhizosphere and endophytic competence. The understanding of colonization processes is important to better predict how bacteria interact with plants and whether they are likely to establish themselves in the plant environment after field application as biofertilisers or biocontrol agents.     

Dealing with the variability in biofumigation efficacy through an epidemiological framework

Biofumigation, as originally defined, is the use, in agriculture, of the toxicity of Brassica crop residues to control soilborne plant pathogens. This toxicity is specifically attributed to the release of toxic isothiocyanates, through the hydrolysis of glucosinolates present in the crop residues. This technique is considered a possible alternative to the use of pesticides, but field studies have generated conflicting data concerning the efficacy of biofumigation at field scale, limiting the use of this technique. Analytical studies based on a systematic approach involving evaluation of the potential effects of isothiocyanates can be used to address this problem in a rigorous manner. However, many recent studies have indicated that the mechanisms underlying biofumigation are much more complex than a simple toxic effect of residues. In this review, we dissect and discuss the problems encountered when trying to understand the variability in biofumigation efficacy and propose an integrative epidemiological approach to overcome these problems. This approach involves separating the effects of the different parameters of the system, such as the effects of different management phases of the biofumigant crop (i.e. the period of biofumigant crop growth and the phase during which crop residues are pulverised and incorporated into the soil) on the epidemiological mechanisms driving the development of an epidemic (density of primary inoculum and dynamics of disease progression). Finally, we propose new avenues of research into biofumigation in which the use of epidemiological tools and methods may improve our understanding of the factors underlying variation in the efficacy of biofumigant crops.     

Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions

 O₂ and pH microsensors were used to analyse the microdistribution of O₂ and pH inside and outside roots of lowland rice (Oryza sativa L.). The roots of 3-week-old transplants had O₂ concentrations of about 20% air saturation at the surface, but due to a high rate of O₂ consumption in the rhizosphere, the oxic region only extended about 0.4 mm into the surrounding soil. Also the fine lateral roots created an oxic zone extending about 0.15 mm into the soil. The O₂ concentration within the roots approached air saturation close to the base, but only about 40–60% of air saturation in a region about 8 cm below the base where lateral rootlets were present. A shift from air to N₂ around the leaves led to a drop of 50% in the O₂ concentration after 12 min at a distance of 8.5 cm from the base. Flowering plants did not export O₂ to the soil from the majority of their roots, but high microbial activity was present in a very thin biofilm covering the root surface. A brown colour around the thin lateral roots indicated some O₂ export from these also during flowering. No oxidized zone was present around the roots at later stages of crop growth. The roots caused only minor minima in pH (<0.2 pH units) in the rhizosphere as compared to the bulk soil. Illumination of the plants had no effect on rhizosphere pH. Received: 28 April 1998     

Microbial response to exudates in the rhizosphere of young beech trees (Fagus sylvatica L.) after dormancy

Plants act as an important link between atmosphere and soil: CO2 is transformed into carbohydrates by photosynthesis. These assimilates are distributed within the plant and translocated via roots into the rhizosphere and soil microorganisms. In this study, 3 year old European beech trees (Fagus sylvatica L.) were exposed after the chilling period to an enriched ¹³C–CO₂ atmosphere (δ¹³C = 60‰ – 80‰) at the time point when leaves development started. Temporal dynamics of assimilated carbon distribution in different plant parts, as well as into dissolved organic carbon and microbial communities in the rhizosphere and bulk soil have been investigated for a 20 days period. Photosynthetically fixed carbon could be traced into plant tissue, dissolved organic carbon and total microbial biomass, where it was utilized by different microbial communities. Due to carbon allocation into the rhizosphere, nutrient stress decreased; exudates were preferentially used by Gram-negative bacteria and (mycorrhizal) fungi, resulting in an enhanced growth. Other microorganisms, like Gram-positive bacteria and mainly micro eucaryotes benefited from the exudates via food web development. Overall our results indicate a fast turnover of exudates and the development of initial food web structures. Additionally a transport of assimilated carbon into bulk soil by (mycrorhizal) fungi was observed.     

运用多隔层根箱研究玉米幼苗根际微域中芘的降解

采用多隔层根箱,通过尼龙撩网插片的控制,实现根室土(S0)、离根室0～2mm(S1)、2～4mm(S2)、4～6mm(S3)及6mm(S4)各室层土壤的分离采集,分析离根系表面不同距离土壤芘的根际降解,并借助脂肪酸甲酯(fattyacidmethylester,FAME)分析土壤微生物群落结构的空间响应机制。结果表明:种植玉米处理的各室层内土壤可提取态芘含量存在显著的不同,其大小顺序为S4S3S0S2S1;各室层微生物群落结构存在显著的变化,其中微生物生物量和丛枝菌根真菌特征脂肪酸含量表现出与土壤可提取态芘含量变化相反的变化趋势。未种植玉米处理的各室层土壤可提取态芘含量和微生物群落结构没有差异。土壤可提取态芘含量与微生物生物量和丛枝菌根真菌的特征脂肪酸呈显著负相关(p0.01)。     

Effect of potassium phosphate fertilization on production and emission of methane and its C-stable isotope composition in rice microcosms

Rice fields are an important source for atmospheric CH₄, but the effects of fertilization are not well known. We studied the turnover of CH₄ in rice soil microcosms without and with addition of potassium phosphate. Height and tiller number of rice plants were higher in the fertilized than in the unfertilized microcosms. Emission rates of CH₄ were also higher, but porewater concentrations of CH₄ were lower. The δ¹³C values of the emitted CH₄ and of the CH₄ in the porewater were both 2-6% higher in the fertilized microcosms than in the control. Potassium phosphate did not affect rate and isotopic signature of CH₄ production in anoxic soil slurries. On the other hand, roots retrieved from fertilized microcosms at the end of incubation exhibited slightly higher CH₄ production rates and slightly higher CH₄-δ¹³C values compared to roots from unfertilized plants. Addition of potassium phosphate to excised rice roots generally inhibited CH₄ production and resulted in increasingly lower δ¹³C values of the produced CH₄. Fractionation of ¹³C during plant ventilation (i.e. δ¹³C in pore water CH₄ versus CH₄ emitted) was larger in the fertilized microcosms than in the control. Besides plant ventilation, this difference may also have been caused by CH₄ oxidation in the rhizosphere. However, calculation from the isotopic data showed that less than 27% of the produced CH₄ was oxidized. Collectively, our results indicate that potassium phosphate fertilization stimulated CH₄ emission by enhancing root methanogenesis, plant ventilation and/or CH₄ oxidation, resulting in residence times of CH₄ in the porewater in the order of hours.