Use of real-time PCR to examine the relationship between disease severity in pea and <Emphasis Type="Italic">Aphanomyces euteiches</Emphasis> DNA content in roots

Aphanomyces euteiches causes severe root rot of peas. Resistance is limited in commercial pea cultivars. Real-time fluorescent PCR assay specific for A. euteiches was used to study the relationship between disease severity and pathogen DNA content in infected peas. Five pea genotypes ranging in levels of resistance were inoculated with five isolates of A. euteiches. Plants were visually rated for disease development and the amount of pathogen DNA in roots was determined using the PCR assay. The susceptible genotypes Genie, DSP and Bolero tended to have significantly more disease and more pathogen DNA than the resistant genotypes 90-2079 and PI 180693. PI 180693 consistently had less disease, while 90-2079 had the lowest amount of pathogen DNA. The Spearman correlation between pathogen DNA quantity and disease development was positive and significant (P < 0.05) for three isolates, but was not significant for two other isolates. This suggests that the real-time PCR assay may have limited application as a selection tool for resistance in pea to A. euteiches. Its utility as a selection tool would be dependent on the correlation between disease development and pathogen DNA content for a given pathogen isolate. The accuracy and specificity of the real-time PCR assay suggests considerable application for the assay in the study of mechanisms of disease resistance and the study of microbial population dynamics in plants.     

有害生物风险分析定量评估模型及其比较

全球化的进程使有害生物入侵问题日益严重,植物检疫工作备受重视。有害生物风险分析(pest risk analysis,PRA)是植物检疫的支撑技术之一,风险评估是其核心内容,定量评估模型的研究与应用成为近30年来该领域的热点。本文在收集、整理国内外PRA文献和相关信息的基础上,针对有害生物入侵风险半定量评估模型、定量评估模型及软件的发展进行了系统性的回顾和分析。同时,我们比较了主要模型和软件的特点、优势和局限性,归纳总结出了适用于不同起点的有害生物定量风险评估集成技术体系,并展望了我国有害生物风险分析技术的未来发展。本综述能够为我国生物入侵防控管理机构、推广部门、高等院校及科研单位提供重要的工作参考,对植物检疫工作具有理论和实践意义。     

单管实时荧光RT PCR方法同时检测大豆种子中的菜豆荚斑驳病毒和烟草环斑病毒

 本研究建立了大豆种子中菜豆荚斑驳病毒（BPMV）和烟草环斑病毒（TRSV）单管双重实时荧光PCR检测方法。将含有相同浓度的分别带有BPMV和TRSV CP基因的质粒溶液作为阳性对照,以受两种病毒侵染的大豆种子作为待测样品进行实时荧光PCR检测,结果表明能从同一管中同时检测出这两种病毒而不发生交叉反应。尽管在阳性对照中,二者的检测限相当,均可达到35 pg/mL,但在实际应用中,两种病毒由于在大豆种子中的浓度不一致而存在一定的差别。该方法快速、灵敏、简便,同时特异性更强,在出入境检验检疫中具有广泛的应用前景。     

烟粉虱模式识别受体βGRPs的先天免疫应答

为探索烟粉虱的β-1,3-葡聚糖识别蛋白(BtβGRP)在烟粉虱先天免疫过程中的重要作用,对烟粉虱中鉴定的3个BtβGRPs基因编码的蛋白质进行结构分析,并与其它物种的23个同源蛋白进行系统进化分析,同时通过实时荧光定量PCR(quantitative real-time PCR,q RT-PCR)检测分析球孢白僵菌侵染烟粉虱不同虫态不同时间点后BtβGRPs的时间表达模式。结果显示:经鉴定3个BtβGRPs蛋白序列均含有βGRP家族特有的保守性结构域,即糖苷水解酶活性结构域;且3个BtβGRPs独自聚在进化树的一支上,可能参与烟粉虱特有的级联路径;3个BtβGRPs基因在不同虫态和不同诱导时间点与对照相比,除BtβGRP3在卵期未表达外,均有上调表达趋势,但诱导程度不同;成虫诱导24~36 h后达到峰值,比卵和若虫稍晚,可能是由于烟粉虱成虫体表有白色蜡粉等物质,延迟了球孢白僵菌对虫体的侵染。研究表明3个BtβGRPs蛋白可能参与了烟粉虱对真菌侵染的免疫反应,有可能成为烟粉虱生防的新靶标。     

应用聚合酶链式反应鉴定新疆棉花落叶型黄萎病菌

用一对棉花落叶型黄萎病菌的特异性引物D1和D2进行PCR扩增,对于落叶型黄萎病菌,该对引物可特异性地扩增产生一段550bp的产物,而非落叶型黄萎病菌则不能被扩增.供试的35个新疆黄萎菌系中,有3个菌系扩增出550bp大小的落叶型黄萎病菌特异性片段,表明目前新疆已存在落叶型黄萎病菌,用此技术可快速、准确地检疫和鉴定落叶型黄萎病菌.     

烟草线条病毒RT-PCR检测方法

根据已报道的烟草线条病毒外壳蛋白基因序列，设计出一对特异性引物，提取大豆病叶的总RNA，反转录成cDNA，PCR扩增出约400bp大小的产物，产物克隆到pGEM-T Easy载体上，转化大肠杆菌DH 5α，抽提的质粒用Not Ⅰ酶切，出现430bp大小的目标插入片段。经序列测定确认了插入片段的大小为404bp。     

Molecular detection of Fusarium solani f. sp. glycines in soybean roots and soil

A polymerase chain reaction (PCR)-based method was developed to detect DNA of Fusarium solani f. sp. glycines , the cause of soybean sudden death syndrome. Two pairs of primers, Fsg1/Fsg2 designed from the mitochondrial small subunit ribosomal RNA gene, and FsgEF1/FsgEF2 designed from the translation elongation factor 1-α gene, produced PCR products of 438 and 237 bp, respectively. Primer specificity was tested with DNA from 82 F. solani f. sp. glycines , 55 F. solani non-SDS isolates, 43 isolates of 17 soybean fungal pathogens and the oomycete Phytophthora sojae , and soybean. The sensitivity of primer Fsg1/Fsg2 was 10 pg while that of FsgEF1/FsgEF2 was 1 ng when using F. solani f. sp. glycines total genomic DNA or down to 10³ macroconidia g⁻¹ soil. Nested PCR increased the sensitivity of the PCR assay 1000-fold to 10 fg using primers Fsg1/Fsg2, and 1 pg using primers FsgEF1/FsgEF2. F. solani f. sp. glycines DNA was detected in field-grown soybean roots and soil by PCR using either single pairs of primers or the combination of two pairs of primers. The occurrence of F. solani f. sp. glycines was determined using nested PCR for 47 soil samples collected from soybean fields in 20 counties of Illinois in 1999. F. solani f. sp. glycines was detected in soil samples from all five Illinois Agricultural Statistic Districts including 100, 89, 50, 92 and 50% of the samples from East, Central, North-east and West Districts, respectively.     

小波变换在土壤有机质含量可见/近红外光谱分析中的应用

使用高光谱仪ASD Field Spec在波长范围400~1 000 nm内采集有机质含量不同的土壤原始光谱;之后,求取土壤原始光谱及其A值的一阶导数(一阶导数光谱);对以上两类一阶导数光谱进行小波去噪处理;并分析这两类一阶光谱在去噪前、后,光谱形态的变化情况,以及它们与有机质含量相关性的改善程度。结果表明:(1)土壤原始光谱及其A值的一阶导数中含有大量噪声,严重影响了对光谱曲线波形轮廓、特征信号点和有机质吸收特征的识别。(2)经小波去噪处理后,土壤原始光谱及其A值的一阶导数中的噪声被有效去除,一阶导数光谱的清晰度明显改善,光谱质量显著提高。(3)去噪后的土壤原始光谱的一阶导数,呈开口向下的"喇叭口"状,波长范围567~598 nm内与有机质含量呈较为稳定、显著的负相关性。(4)去噪后的土壤原始光谱A值的一阶导数,波形呈"凹"状,波长范围524~535 nm内与有机质含量呈比较稳定、显著的正相关性。     

Pathogenesis-related gene expression in rice is correlated with developmentally controlled Xa21-mediated resistance against Xanthomonas oryzae pv. oryzae

Disease resistance mediated by the resistance gene Xa21 is developmentally controlled in rice. We examined the relationship between Pathogenesis Related (PR) defense gene expression and Xa21-mediated developmental disease resistance induced by Xanthomonas oryzae pv. oryzae (Xoo). OsPR1a, OsPR1b, and OsPR1c genes were cloned and their induction was analyzed, in addition to the OsPR10a gene, at the juvenile and adult stages in response to a wildtype Xoo strain that induces a resistance response (incompatible interaction) and an isogenic mutant Xoo strain that does not (compatible interaction). We found that the adult stage leaves are more competent to express these OsPR1 genes and that the Xa21 locus is required for the highest levels of induction.     

高效液相色谱法定量分析甲氨基阿维菌素苯甲酸盐

研究用HPLC定量分析甲维盐的方法。色谱条件如下:150mm×4.6mm不锈钢柱,用Hypersil,C185μm粒径,孔径300A;流动相:甲醇+水=80+20;流速1.0mL/min;紫外检测器波长254nm。本方法在1～8μg进样范围内和峰高呈线性。相关系数值(r)为0.9997。甲维盐分析方法的回收率为99.42%。