Genetic diversity in mustard (Brassica juncea L.) germplasm from Pakistan as determined by RAPDs

The genetic diversity and the relationships among a collection of mustard (B. juncea) germplasm, including 41 accessions collected from Pakistan, 6 oilseed cultivars/ lines and 5 Japanese vegetable cultivars, were evaluated using random amplified polymorphic DNA (RAPD) markers. A total of 198 polymorphic amplified products were obtained from 30 decamer primers. Of these, 14 were unique to the accession PAK-85835 and 37 were specific to PAK-85839. Based on pair-wise comparisons of RAPD amplification products, genetic similarity was estimated using similarity coefficients of Nei & Li (1979) and a dendrogram was constructed using the unweighted pair-group method with arithmetic averages (UPGMA). Cluster analysis based on these genetic similarities placed most of the collected germplasm and oilseed cultivars/lines close to each other, showing a low level of polymorphism between the oilseed accessions collected in Pakistan. However, the clusters formed by the oilseed collections and cultivars were distinct from those formed by the vegetable cultivars. A low level of genetic variability of oilseed mustard in Pakistan was attributed to the selection for similar traits and horticultural uses. The farmers' preference for more remunerative crops and perhaps the close parentage of these accessions further contributed towards their little diversity. The study demonstrated that the RAPD is a simple and fast technique to compare the genetic relationships and the patterns of variation among accessions of this crop. This revised version was published online in August 2006 with corrections to the Cover Date.     

Genetic diversity in landrace populations of Hordeum vulgare L. from Sardinia, Italy, as revealed by RAPDs, isozymes and morphophenological traits

Barley is the second most widely cultivated cereal on the island of Sardinia. It is grown for green fodder, grain and straw, all of which are used for animal feet. The cultivation of modem varieties is limited and many farmers grow local populations of the six-row landrace ‘S'orgiu sardu’. Twelve local populations (20 strains per population) were evaluated for 13 random amplified polymorphic DNA (RAPD) markers, sisisozyme loci and five morphophenological traits. Results showed that Sardinian barley is characterized by a lax six-row spike and is. in general, a spring type. Isozyme polymorphism was delected for only two esterase loci (Est and Est 4). The genetic variation for all types of murkers, was found located mostly within population (about 84%, for isozymes aud morphaphenological traits and 89%, for RAPDs). This finding appears to confirm the hypothesis that the populations studied belong to the same land race called ‘S'orgiu sardu’ by farmers. A geographical differential ion between southern and northern populations was foand in relation to distinct environmental characteristics. Taking into account all types of marker 209 (90.5%) different genotypes were identified out of 231 individuals. The overall results confirm the high variability that can be found within landrace populations, underlining the value of landraccs as a source of genetic variation.     

Population diversity of the Vicia sativa agg. (Fabaceae) in the flora of the former USSR deduced from RAPD and seed protein analyses

The genetic diversity of 58 wild and weedy populations representing taxa within the V. sativa aggregate from the former USSR, 4 cultivars of V. sativa, 2 accessions of V. cordata and 3 accessions of V. macrocarpa from Mediterranean countries were analysed using randomly amplified DNA fragments (RAPDs) and seed protein electrophoresis (SDS-PAGE). Interspecific variation between taxa in the V. sativa aggregate could readily be detected using both techniques. RAPDs and seed protein patterns were found to be an effective means of identifying accessions that cannot be identified clearly by morphological criteria alone. RAPD and seed protein analysis revealed a clear relationship between observed genetic variation of populations and their geographical distribution. Populations from each region had their own gene pools. Geographical variation was detected in V. segetalis. The degree of genetic divergence between local populations was usually related to proximity. In several locations where wild and weedy populations of different V. sativa agg. taxa grow sympatrically, intermediate forms could be detected at the DNA and protein levels. Both RAPD and seed protein analysis support the view that the V. sativa aggregate consists of 8 taxa warranting recognition at the species level. Several species in this aggregate are evolving intra-specific groups which can readily be detected at the molecular level.     

转基因抗虫棉品种(系)的遗传多样性初步研究

利用简单重复序列（SSRs)和随机扩增多态性DNAs(RAPDs)2种分子标记对来自我国各个棉区的30份陆地棉转基因四种质材料进行了遗传多样性分析，材料包含有我国的3种转基因类型，利用NTSYS-pc2.10统计分析软件，采用Jaccard‘s相似系数UPGMA法进行聚类，结果表明，3类转基因材料大致分为不同的2类，而且不同棉区的转基因材料交叉分布，相似系数分析表明，我国转基因材料的遗传多样性相对较为丰富。同时对我国转基因材料的生产应用提供了参考意见。     

利用RAPD对桑属植物种间亲缘关系的研究

 通过20个随机引物的PCR扩增结果，得到了桑属12个种和2个变种的RAPD指纹图谱，在桑属植物中表现了丰富的RAPD多态性。根据扩增结果，计算了12个种和2个变种的Nei氏相似系数和遗传距离，建立了它们的UPGMA系统树。结果表明，川桑与其它种的亲缘关系最远，是分化较为独特的桑种之一。在UPGMA系统树上由结合线L#-2所划分的桑种类群与传统的形态分类基本一致。结合传统分类对系统树上的聚类结果进行了讨论。     

New ornamental Jatropha hybrids through interspecific hybridization

Interspecific hybridization has been successful between two economically important species of Jatropha, viz., J. curcas and J. integerrima. The interspecific hybrids exhibited morphological intermediacy for various vegetative characteristics but produced flowers with three distinct colours. Backcrossing of the F₁ hybrids resulted in a number of flower colours varying from dark pink through green to white enhancing the ornamental value of the genus. Hybridity was confirmed through PCR amplification using random primers. The various propagation methods for these new ornamental Jatrophas are discussed.     

Characterization of under-utilized fruits by molecular markers. A case study of loquat

The usefulness of RAPD markers for genotyping a minor fruit species such as loquat has been tested in order to assess their ability for identifying accessions and to provide a set of markers suitable for use by different groups of scientists and curators. Twenty-nine polymorphic markers selected from a previous study of 33 accessions were tested in 46 new accessions added to the collection. Using the same PCR standard conditions, only 20 markers out of 29 selected in the previous study gave consistent amplifications in the new set of plant material. The rest required optimization of reaction conditions. This fact pointed out that RAPD markers were sensitive to the experimental conditions, hence a standard technique did not guarantee reproducibility. To overcome this problem markers for plant fingerprinting should be selected after comparison across accession sets. Only those markers reproducible with different sampling and checked in several sets of accessions are suitable for germplasm fingerprinting. In the present study we propose 31 RAPDs for fingerprinting loquat that accomplished these characteristics.The markers obtained were sufficient for determining origin and relationships of cultivars, for identifying synonyms and derived varieties from bud-sports. All bud sports were identical for all RAPDs selected.     

Analysis of loquat germplasm (Eriobotrya japonica Lindl) by RAPD molecular markers

The loquat’s adaptation to Spain has proved very successful. In the Valencia area, the crop has met with very good environmental conditions for its development. Many new cultivars have been selected by growers and a European loquat germplasm collection has been established in Valencia at IVIA. An efficient sampling as well as implementation of germplasm resources requires the accurate identification of plant material. Molecular markers offer an effective tool for cultivar fingerprinting, estimation of genetic similarity and relationships. In this study, as a tool for germplasm management, RAPD markers were tested. Thirty-six primers were used to screen 33 cultivars. Twenty-three primers proved polymorphic. These primers generated 29 polymorphic amplification fragments that were selected as markers. Twenty-two cultivars out of 33 were identified by unique combinations of RAPD markers. Four different combinations were shared by two or more cultivars each. Cluster analysis based on the similarity matrix obtained from Nei’s coefficient among cultivars showed groupings that agreed according to geographical and genetic origin. RAPD technology was useful in distinguishing those cultivars obtained through hybridization but could not be used to distinguish those obtained by selection of mutations. This revised version was published online in August 2006 with corrections to the Cover Date.     

Sexual hybridisation in crosses of cultivated Brassica species with the crucifers Erucastrum gallicum and Raphanus raphanistrum: Potential for gene introgression

Studies were conducted to investigate the crossability of the cultivated Brassica species, Brassica napus (oilseed rape), B. rapa (turnip rape), and B. juncea (brown and oriental mustard), with two related cruciferous weeds that are abundant in certain regions of Canada, Erucastrum gallicum (dog mustard) and Raphanus raphanistrum ssp. raphanistrum (wild radish). Seed was produced without recourse to embryo rescue from all reciprocal crosses except R. raphanistrum × B. juncea. Four hybrid plants were recovered, namely B. napus × E. gallicum, B. napus × R. raphanistrum (two plants), and B. rapa × E. gallicum. The hybrids were characterized by their morphology, RAPD analysis, and cytological examination. The B. rapa × E. gallicum hybrid was extremely vigourous and fertile, and would likely grow in natural habitats. This hybrid produced self-seed and backcrossed readily with the B. rapa parent and, to a lesser extent, with the E. gallicum parent. The B. napus × E. gallicum hybrid was a weak plant, but produced fertile backcross progeny with the E. gallicum parent. The B. napus × R. raphanistrum hybrids were vigourous but mostly sterile. Because of their low vigour and/or sterility, hybrids produced from crosses of B. napus with the cruciferous weeds would not likely be an environmental concern. However, the potential of the B. napus × E. gallicum and B. rapa × E. gallicum hybrids to backcross with E. gallicum may be of concern. This revised version was published online in July 2006 with corrections to the Cover Date.