Effect of weed interference on Zea mays: Growth analysis

In order to investigate the effect of weed competition on corn, growth trials were conducted in Shushtar, Iran, using a comparative growth analysis. In this study, two sets of treatments were imposed, based on the phenological stages of corn development, using a randomized complete block design with three replicates. The results showed that barnyardgrass and redroot pigweed were the most dominant weeds in these trials. Increasing the duration of weed interference reduced the corn leaf area index gradually. The reduction in the corn leaf area index led to a decline in the crop growth rate as a result of a reduction in the ability of corn to capture light and its photosynthetic ability. The total dry matter and relative growth rate of corn were decreased when the weeds were removed later as a result of a reduction in the leaf area index. According to these results, the leaf area index has a critical role in weed–crop competition.     

水稻株型相关性状的QTL分析

以南方籼型杂交稻恢复系泸恢99和北方粳型超级稻沈农265杂交衍生的重组自交系群体(recombinant inbred lines, RILs)为试验材料, 对株型性状(株高、穗长、分蘖和叶片性状)进行不同环境下的数量性状基因位点(quantitative trait locus, QTL)分析。共检测到39个相关QTL, 分布在水稻第1、第2、第3、第6、第7、第8和第9染色体上, LOD值介于2.50~16.90之间, 有11个QTL能在两年中被检测到。株型相关的QTL在染色体上成簇分布, 主要分布于第1、第6和第9染色体上, 这可能与株型性状间显著或极显著相关有关。其中, 在第9染色体上RM3700B–RM7424区间存在1个QTL簇, 含4个QTL, 即qPH9、qPL9、qFLL9和qSLL9, 这4个QTL在两年中均被检测到。此外, 进一步鉴定出5个能稳定表达的QTL, 其中, qPH8、qFLW6和qSLW6效应较大。这些信息综合反映了株型相关性状遗传的复杂性, 有助于我们更全面地了解和掌握株型性状的遗传基础。     

Data analysis for molecular characterization of plant genetic resources

Characterizations of plant genetic resources based on molecular markers have been increased in the last years. Studies using a broad range of markers applied on hundreds of plant species are the theoretical basis for inferring genetic diversity to propose both breeding and conservation strategies. Despite increased importance of molecular characterization in plant genetic resources, there is scarce information about analysis of this type of data. To fill this gap of information, this review discuss the rationale behind analyses achieved to study genetic relationship among accessions (within and between groups) and to identify accession, and also discuss the adequacy of some analyses and/or parameters for specific purposes. Genetic diversity within groups may be either quantified for the whole group (parameters to choose will depend on type of marker), or quantified and visualized for the relationships among individuals. Quantification parameters will be chosen depending on type of marker, reproduction mode and relatedness of individuals. Visualization is achieved by hierarchical and non-hierarchical methods. Genetic diversity between groups should be quantified either by analysis of molecular variance, or Nei’s parameters, or Wright’s F-statistics. Efficiency of accession identification can be evaluated by maximal probability of identical match by chance and number of resolved genotypes.     

Spatial and interspecific variability in phenological responses to warming temperatures

A comprehensive understanding of species phenological responses to global warming will require observations that are both long-term and spatially extensive. Here we present an analysis of the spring phenological response to climate variation of twelve taxa: six plants, three birds, a frog, and two insects. Phenology was monitored using standardized protocols at 176 meteorological stations in Japan and South Korea from 1953 to 2005, and in some cases even longer. We developed a hierarchical Bayesian model to examine the complex interactions of temperature, site effects, and latitude on phenology. Results show species-specific variation in the magnitude and even in the direction of their responses to increasing temperature, which also differ from site-to-site. At most sites the differences in phenology among species are forecast to become greater with warmer temperatures. Our results challenge the assertion that trends in one geographic region can be extrapolated to others, and emphasize the idiosyncratic nature of the species response to global warming. Field studies are needed to determine how these patterns of variation in species response to climate change affect species interactions and the ability to persist in a changing climate.     

FT-IR study of the changes in carbohydrate chemistry of three New Jersey pine barrens leaf litters during simulated control burning

Low intensity control burns are a standard fuel reduction management tool used in pine barrens ecosystems. Periodic disturbances through fire can be an important influence on the cycling of nutrients within the ecosystem. Previous studies have shown that the inorganic chemistry of leaf litter residues differs with increasing temperature. Our study compared chemical changes in white oak (Quercus alba), pitch pine (Pinus rigida) and black huckleberry (Gaylussacia baccata), characteristic of the New Jersey pine barrens, during thermal decomposition using FT-IR spectroscopy. Three replicates of senescent leaf material were ground and separately heated for 2 h at: 100, 200, 300, 400 and 550 °C. These temperatures are representative of the range seen in fuel reducing prescribed burns in the pine barrens. Unburned litter of each species was used as a control. An optimization process using varying amounts of KBr and oak litter was performed to develop favorable FT-IR spectral conditions for a sample to KBr ratio of 0.75%. Chemometric analysis of the FT-IR spectra using principal component analysis (PCA) was used to analyze the changes in carbohydrate chemistry of each litter plant species (leaf litter species) at each temperature. In general, it appears that there is clear separation of leaf litter species at the different combustion temperatures. Infrared spectroscopy illustrated that all three species shared wavenumbers characteristic of the primary components of leaves such as cellulose, lignin and hemicellulose. Results from the PCA indicated separation of litter species and species by combustion temperature. PC axis 1 corresponds to the effects of temperature on leaf litter species and PC axis 2 separates the leaf litter species. At the low temperatures (control-200 °C), oak, pine and huckleberry litter species separated from each other. Wavenumbers that contributed to the separation of species at low temperatures belonged to functional group stretching frequencies of outer surface waxes, basic sugars, fatty acids and aldehydes. It appears that oak had more IR bands specific to suberin content. Convergence of these species occurs at 300 °C. Complexity of chemical composition decreases at this particular temperature as is shown by the decrease in wavenumber richness when compared to litters at low and high temperatures. Oak, pine and huckleberry had similar IR spectra showing bands belonging to outer surface wax content, pectin, lignin and hemicellulose. With increasing temperatures (400-550 °C), differences between litter species increased slightly. Plant material was reduced to similar composition due to thermal decomposition, which consisted of inorganic materials such as carbonate, phosphate and sulfate ions and possible fused aromatics.     

Glyphosate- and imazethapyr-induced effects on yield, nodule mass and biological nitrogen fixation in field-grown glyphosate-resistant soybean

Over half of the 21 Mha of soybean planted in Brazil is now transgenic glyphosate-resistant (GM_RR). A field experiment was carried out to investigate whether the application of glyphosate or imazethapyr to the GM_RR variety reduced the input of N₂ fixation (BNF). No effects on yield, total N accumulation, nodulation and BNF (δ¹⁵N) could be assigned to the genetic modification of the plant. Imazethapyr reduced soybean yield but had no significant effect on BNF. Even though yields were not affected by glyphosate, the significant reduction of nodule mass and BNF to the GM_RR suggests that the use of this herbicide could lead to an increased dependence on soil N and consequently an eventual decrease of SOM reserves.     

Does accelerated soil organic matter decomposition in the presence of plants increase plant N availability?

Plant roots can increase microbial activity and soil organic matter (SOM) decomposition via rhizosphere priming effects. It is virtually unknown how differences in the priming effect among plant species and soil type affect N mineralization and plant uptake. In a greenhouse experiment, we tested whether priming effects caused by Fremont cottonwood (Populus fremontii) and Ponderosa pine (Pinus ponderosa) grown in three different soil types increased plant available N. We measured primed C as the difference in soil-derived CO₂-C fluxes between planted and non-planted treatments. We calculated “excess plant available N” as the difference in plant available N (estimated from changes in soil inorganic N and plant N pools at the start and end of the experiment) between planted and non-planted treatments. Gross N mineralization at day 105 was significantly greater in the presence of plants across all treatments, while microbial N measured at the same time was not affected by plant presence. Gross N mineralization was significantly positively correlated to the rate of priming. Species effects on plant available N were not consistent among soil types. Plant available N in one soil type increased in the P. fremontii treatment but not in the P. ponderosa treatment, whereas in the other two soils, the effects of the two plant species were reversed. There was no relationship between the cumulative amount of primed C and excess plant available N during the first 107 days of the experiment when inorganic N was still abundant in all planted soils. However, during the second half of the experiment (days 108-398) when soil inorganic N in the planted treatments was depleted by plant N uptake, the cumulative amount of primed C was significantly positively correlated to excess plant available N. Primed C explained 78% of the variability in plant available N for five of the six plant-soil combinations. Excess plant available N could not be predicted from cumulative amount of primed C in one species-soil type combination. Possibly, greater microbial N immobilization due to large inputs of rhizodeposits with low N concentration may have reduced plant available N or we may have underestimated plant available N in this treatment because of N loss through root exudation and death. We conclude that soil N availability cannot be determined by soil properties alone, but that is strongly influenced by root-soil interactions.     

Pollinator-dependent food production in Mexico

Animal pollination is one of the essential services provided by ecosystems to humans. In the face of a potential worldwide pollination crisis it is important to assess which countries may be more vulnerable in order to prioritize pollinator conservation efforts. The poverty level, the population density and the level of pollinator dependence for food provisioning are key aspects to identify vulnerable countries. We evaluate these aspects and determine the level of human food provisioning dependence on pollinators in Mexico, a developing and highly populated country. The diversity of crop species in Mexico is exceptionally high. Nearly 85% of fruit and/or seed consumed species depend to some degree on pollinators for productivity. Overall, pollinator-dependent crops generate larger income but cover a lower cultivated area and produce less volume compared to non-pollinator-dependent crops. Volume per unit area, however, as well as revenue per unit area, is much higher for pollinator-dependent crops. Native wild pollinators also play a key role in fruit or seed production of Mexican domesticated plant species and in the reproduction of many useful wild species. Thus, assuring free pollination services is particularly important in Mexico as the livelihood of a large proportion of the population exclusively and directly depends on ecosystem services for subsistence. Feasible conservation strategies involve the payment of environmental services to Ejidos (communal land tenure systems) making efforts to protect or restore plant resources and native pollinators, and the creation of new protected natural areas, which ensures food provision, mating and nesting sites for pollinators.     

Use of the Biological Flora framework in the United Kingdom Overseas Territories: Euphorbia origanoides L.

The United Kingdom Overseas Territories (UKOTs) are globally important for a high diversity of endemic and threatened plant species but are poorly represented in plant ecological literature. This lack of ecological research is compounded by a lack of funding and skills. Cost effective approaches of compiling conservation relevant information are required. Here we present the first examination of a species from the UKOTs presented within the standard framework of a Biological Flora. This framework allows a convenient way to compile ecological information and assess missing data. The account reviews all available information on Euphorbia origanoides L. (Ascension spurge) from Ascension Island (South Atlantic Ocean) relevant to understanding its ecology and conservation, including soil chemistry, climate and plant community data. E. origanoides is an endemic perennial, found in dry, lava plains of Ascension Island with soils comprised of weathered volcanic scoria. E. origanoides has suffered habitat loss through the introduction of invasive species and survival in the wild is currently under threat. We relate the information gathered for this Biological Flora to the conservation of the species in the wild and propose the framework should be used as one way of compiling information relevant for conservation managers. The framework is beneficial as it allows an evidence-based approach to conservation but also permits the prioritisation of research and can help conservation managers to meet targets for the Convention on Biological Diversity and the Global Strategy for Plant Conservation.     

The “soil microbial loop” is not always needed to explain protozoan stimulation of plants

Protozoa stimulate plant growth, but we do not completely understand the underlying mechanisms, and different hypotheses seek to explain this phenomenon. To test these hypotheses, we grew the grass Yorkshire fog (Holcus lanatus) in pots with soil, which contained either (1) no organisms but bacteria – or (2) bacteria and protozoa. Half of the pots received a glucose treatment so as to mimic an additional root exudation. We measured plant growth and plant nitrogen uptake, along with various microbial pools and processes that support plant growth. Protozoan presence significantly enhanced soil nitrogen mineralization, plant nitrogen uptake from organic nitrogen sources, plant nitrogen content, and plant growth. By contrast, we found no evidence that glucose addition, mimicking root exudation, increased soil nitrogen availability and plant nitrogen uptake. Moreover, although protozoan presence affected bacterial community structure, it did not affect the proportion of IAA-producing bacteria in the community or plant root morphology. These results refute the “soil microbial loop” hypotheses, which suggest that protozoan stimulation of plant growth results from complex interactions between plant roots, bacteria and protozoa. Our experiment thus favours the simple explanation that increased nitrogen availability is the key factor behind the positive protozoan effect on plant growth. To exploit natural resources in an efficient and environmentally friendly way, we need to understand in detail the functioning of ecosystems. This study stresses that to achieve this, it is still urgent, besides investigating intricate food-web and signal compound interactions, also to focus on the basic stoichiometric and energetic aspects of organisms.