Genetic analysis of Aequipecten opercularis and Mimachlamys varia (Bivalvia: Pectinidae) in several Atlantic and Mediterranean localities, revealed by mitochondrial PCR-RFLPs: a preliminary study

Aequipecten opercularis (Queen scallop) and Mimachlamys (Chlamys) varia (Black scallop) are important natural resources occurring in Atlantic and Mediterranean coasts. To develop an optimal sustainable exploitation plan, it is important to study the genetic structure of the different populations. In this study, we used polymerase chain reaction‐restriction fragment length polymorphisms for the determination of the genetic variation and population structure of these two species in different localities. Ten composite haplotypes were generated for A. opercularis and 15 haplotypes for M. varia. Of these, six and four were unique respectively. The analysis of the distribution of the different haplotypes between the localities showed no clear evidence of subdivision in A. opercularis, while in M. varia the results indicated that the two localities analysed should be managed as separate stocks.     

大连湾和辽东湾夏季海水细菌多样性16S rDNA分析

通过构建大连湾(DL17)和辽东湾(ZD-LDW017)2个站点夏季海水的细菌16s rDNA文库,利用16S rDNA序列比对法,对大连湾和辽东湾夏季海水细菌多样性进行了分析.试验结果表明,这2个海域的细菌主要为非培养细菌.每个海区分别随机选取了200个克隆进行酶切谱型分析和序列测定,共得到104个不同的DNA序列,其中大连湾51个序列,分别属于13种(属);辽东湾53个序列,分别属于13种(属).有6种菌为这2个海区所共有,这2个海区各自有不同的优势菌,且均未检测到致病菌,研究结果表明大连湾和辽东湾海水细菌具有丰富的多样性.     

西北地区马铃薯疮痂病病原菌鉴定及其生物学特性

为明确西北地区马铃薯疮痂病病原菌的种类和生物学特性,分别采用常规组织分离法和土壤混悬液分离法从宁夏、陕西和甘肃3个省区采集的29份疮痂病发病薯块和8份发病地块土壤中进行病原菌分离,并利用形态特征、生理生化特性和16S rDNA序列分析对病原菌进行鉴定。结果表明,从发病薯块和发病土壤中共分离到50株链霉菌Streptomyces spp.,通过回接法验证获得6株马铃薯疮痂病致病菌株。6株致病菌株的培养特性和形态特征差别较大;其中菌株G4-1、G9和SYN13不能以果糖和木糖为单一碳源,菌株SYNT3不能以棉子糖为单一碳源;除菌株NLG4-1外,其余5株菌株均能在络氨酸琼脂培养基上产生黑色素。经16S rDNA序列分析,菌株G4-1、G9与疮痂病链霉菌S. scabiei的相似率分别达99.47%和99.34%,菌株NLG4-1、SYNT3与S. enissocaesilis的相似率分别达97.90%和98.18%,菌株GBH2与加利利链霉菌S. galilaeus的相似率达99.93%,菌株SYN13与S. turgidiscabies的相似率达97.56%,表明西北地区马铃薯疮痂病病原菌至少存在4个种。     

基于ATmega16和SHT71的鸡舍温湿度测控系统

鸡舍温度对鸡的产蛋量、蛋的大小和蛋壳厚度都有不良的影响。鸡舍的空气湿度对鸡体蒸发散热和非蒸发散热都有影响。为此,提出了基于ATmega16、计算机及SHT71组成的鸡舍温湿度检测控制系统。它可以利用SHT71完成对鸡舍环境温度和湿度的自动检测,把数据通过RS485传输到计算机,通过计算机进行相应的数据处理,并控制风扇和水帘,来对鸡舍的温湿度进行自动调节。最后,利用PROTEUS对整个系统进行仿真调试。     

沙田柚黄龙病病原16S rDNA片段的克隆与序列分析

采集田间表现斑驳症状的沙田柚叶脉,用CTAB法提取总DNA。根据柑橘黄龙病病原16S rDNA的核苷酸序列设计引物P1/P2,进行PCR扩增,获得1条大小为1 167 bp的片段。酶切分析显示,该片段可被切成大小分别约为640 bp和520 bp的2个片段。扩增产物经纯化,与pM D 18-T V ector连接,转化大肠杆菌(E scherich ia coli)DH 5α,筛选克隆重组子。对PCR产物进行测序及序列分析,结果表明,与柑橘黄龙病病原亚洲种16S rDNA的同源性为99%,与非洲种的同源性为97%,与美洲种的同源性为96%。认为,沙田柚的斑驳症状是由黄龙病病原引致的,称之为沙田柚黄龙病。该沙田柚黄龙病病原属于柑橘黄龙病病原亚洲种(L iberobacter as iaticus)中的一个成员。系统进化树分析显示,沙田柚黄龙病病原与中国柑橘黄龙病病原亲缘关系最近,推测是直接来自中国柑橘黄龙病病原。     

胨冻样芽孢杆菌(Bacillus mucilaginosus YNUCC0001)絮凝剂生产、絮凝特性及其系统发育学分析

对BacillusmucilaginosusYNUCC000116SrDNA的1481bp片段与GenBank中最相似的16个分类单位进行了比较。UPGMA,NJ,ME和MP方法构建的系统发育树显示B.mucilaginosusYNUCC0001与B.mucilaginosusHSCC1605T、B.mucilaginosus1480D及Paenibacillussp.NBT形成一个单系群分支。在50L全自动发酵罐中30℃发酵52h后,菌株YNUCC0001产生的胞外生物多聚絮凝剂(EBF)达到最大产率(粘度:3420C.P.)。在pH4.0、用量为0.25mlL-1的条件下,这种EBF对高岭土悬浊液的絮凝活性最大(99.8%);121℃高压灭菌60min后絮凝活性维持在98.6%。Hg2+,Ca2+,Mg2+,K+,Zn2+对其絮凝活性有促进作用,而Fe3+、Al3+、EDTA和Cu2+则有强烈抑制。     

7株解有机磷细菌的分离和鉴定

从土壤中分离筛选出7株解有机磷的微生物。对这7株解磷细菌进行了形态、生理生化性状测定及16SrDNA序列分析(GenBankaccessionNo:S2,AY651922;S3,AY661923;X1,AY651925;Y1,AY651924;H1,AY663435;H2,AY663436andHe,AY663436)。其中S2、S3、X1和He属于假单胞菌属(Pseudomonas),Y1属于芽孢杆菌属(Bacillus),H1属于不动杆菌属(Acinetobacter),H2属于寡养单胞菌属(Stenotrophomonas)。进一步通过G C含量和DNA-DNA杂交研究,结果表明,S2、S3和X1为产碱假单胞菌(Pseudomonasalcaligenes),Y1为蜡状芽孢杆菌(Bacilluscereus)。     

多氯联苯复合污染土壤的土著微生物修复强化措施研究

通过室内模拟试验,以不同C源、C/N比、水分及通透性为调控因子,对多氯联苯(PCBs)长期复合污染土壤的土著微生物强化修复进行了初步研究。结果表明,PCBs长期复合污染土壤中,在土壤水分含量为田间持水量的60%时,加入淀粉、葡萄糖和琥珀酸钠均在一定程度上增加了细菌和真菌数量,从而促进土壤中PCBs的土著微生物降解。不同种类的C源对PCBs污染土壤的土著微生物降解效果存在明显差异,且其降解效果与C源的施用剂量密切相关。当淀粉加入量为C1.0g/kg土时,土壤中PCBs的降解效果较好,而葡萄糖和琥珀酸钠加入量为C0.2g/kg土时,PCBs的降解效果明显。土壤C/N比为10:1的处理效果优于C/N比为25:1和40:1。土壤人为翻动有利于PCBs污染土壤中细菌和真菌的生长,提高土著微生物的代谢活性,从而促进土壤中PCBs的自然降解。这为进一步探讨加速土壤中PCBs降解的最适条件和研发POPs污染土壤的生物修复技术提供了科学依据。     

Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment

Dried soil samples from many sources have been stored in archives world-wide over the years, but there has been little research on their value for studying microbial populations. Samples collected since 1843 from the Broadbalk field experiment on crop nutrition at Rothamsted have been used to document changes in the structure and composition of soils as agricultural practices evolve, also offering an invaluable record of environmental changes from the pre- to post-industrial era in the UK. To date, the microbial communities of these soils have not been studied, in part due to the well-documented drop in bacterial culturability in dried soils. However, modern molecular methods based on PCR amplification of DNA extracted directly from soil do not require bacterial cells to be viable or intact and may allow investigations into the legacy of bacteria that were present at the time of sample collection.

In a preliminary study, to establish if dried soils can provide a historical record of bacterial communities, samples from the Broadbalk soil archive dating back to 1868 were investigated and plots treated with either farmyard manure (FYM) or inorganic fertilizer (NPK) were compared. As anticipated, the processes of air-drying and milling greatly reduced bacterial viability whilst DNA yields declined less and may be preserved by desiccation. A higher proportion of culturable bacteria survived the archiving process in the FYM soil, possibly protected by the increased soil organic matter. The majority of surviving bacteria were firmicutes, whether collected in 2003 or in 1914, but a wide range of genera was detected in DNA extracted from the samples using PCR and DGGE of 16S rRNA genes. Analysis of DGGE band profiles indicated that the two plots maintained divergent populations. Sequence analysis of bands excised from DGGE gels, from a sample collected in 1914, revealed DNA from - and β-proteobacteria as well as firmicutes. PCR using primers specific for ammonia oxidizing bacteria showed similar band profiles across the two treatments in recently collected samples, however older samples from the NPK plot showed greater divergence. Primers specific for the genus Pseudomonas were designed and used in real-time quantitative PCR to indicate that archived soil collected in 1868 contained 10-fold less pseudomonad DNA than fresh soil, representing around 10⁵ genomes g⁻¹ soil. Prior to milling, dramatically less pseudomonad DNA was extracted from recently collected air-dried soil from the NPK compared to the FYM plot; otherwise, the two plots followed similar trends. Overall bacterial abundance, diversity and survival during the archiving process differed in the two soils, possibly due to differences in clay and soil organic matter content. Nevertheless, the results demonstrate that air-dried soils can protect microbial DNA for more than 150 years and offer an invaluable resource for future research.     

高产水稻土细菌多样性的培养法与非培养法比较研究

利用细菌的通用引物扩增江西余江县高产水稻土红壤细菌总DNA和平板培养细菌混合总DNA的16S rDNA基因片段,在此基础上分别建立两种16S rDNA文库(文库a和文库b)。从两个文库中各随机挑选100个克隆,扩增出阳性克隆中的插入片段后选用HhaⅠ和RsaⅠ两种四碱基酶进行ARDRA(amplified rDNA restriction analysis)分析。统计比较分析发现,文库a的Shannon-Wienner指数、Simpson指数、丰富度、均一度分别为4.432、0.987、18.885和0.973,均高于文库b中相应的多样性参数(分别为2.271、0.758、5.736和0.501),即平板培养方法所展现的细菌群落结构多样性低于土壤中原始的多样性。结果表明,传统培养方法存在着很大的局限性,必须结合新的分子生物学技术手段才能更全面完善地认识土壤微生物群落结构多样性,以期充分利用其中丰富的微生物资源。