本研究旨在了解酪氨酸酶相关蛋白1(tyrosinase related protein 1,TYRP1)基因在中国地方绵羊群体内的遗传变异,以及TYRP1基因突变与不同毛色表型绵羊群体的相关性。通过直接测序法和PCR-RFLP技术对10个中国地方绵羊群体进行单核苷酸多态性(SNP)检测,利用Beagle、PLINK和POPGENE等软件对突变位点数据进行单倍型构建、连锁不平衡分析和遗传变异研究。突变位点检测结果表明,在绵羊TYRP1基因内识别了13个SNPs,其中位于TYRP1基因外显子上的10个SNPs位点,除个别位点在大尾寒羊、中国美利奴羊和岷县黑裘皮羊中没有发生突变外,其他突变位点在所有绵羊品种中均出现不同程度变异,说明中国地方绵羊群体具有较高的遗传多样性。单倍型分析结果表明,所有样本中共有42个单倍型,优势单倍型0000000000(245/918)、0100000001(91/918)在所有绵羊群体中均存在,除单倍型0101100000(93/918)在中国美利奴羊中没有出现,单倍型0001000001(69/918)在岷县黑裘皮羊、哈萨克羊群体中没有出现外,在其他群体中均存在。连锁分析结果表明,10个SNPs在所有样本中均存在2个连锁模块。群体遗传变异分析表明,中国地方绵羊群体具有较高水平的群体内遗传变异,各绵羊品种间存在明显的遗传分化模式,且各品种遗传关系与其品种传统分类结果基本一致。本研究为进一步研究TYRP1基因对绵羊毛色遗传性状的影响提供了参考依据。 相似文献
ABSTRACT1. The aim of this study was to explore genetic diversity and possible origin of Bangladeshi (BD) native chickens. The complete mtDNA D-loop region was sequenced in 60 chickens representing five populations; naked neck, full feathered, Aseel, Hilly and autosomal dwarf. The 61 reference sequences representing different domestic chicken clades in China, India, Laos, Indonesia, Myanmar, and other Eurasian regions were included. The mtDNA D-loop sequence polymorphism and maternal origin of five BD populations were analysed.2. A total of 35 polymorphic sites, and 21 haplotypes were detected in 60 mtDNA D-loop sequences. The haplotype and nucleotide diversity of the five populations were 0.921 ± 0.018 and 0.0061 ± 0.0019, respectively. Both mtDNA network and phylogenetic analysis indicated four clades (four haplogroups) in BD populations (21 haplotypes) along with 61 reference haplotypes. Clade E contained the most individuals (20) and haplotypes (11) of BD chickens, followed by clade D (17, 6), clade C (12, 2) and clade F (11, 2), respectively.3. The higher number of unique haplotypes found in Yunnan, China, suggested that the origin of BD chickens was in this region. The haplotypes from different haplogroups were introduced in Bangladeshi chickens from India, China and Myanmar. The phylogenetic tree showed a close relationship of BD chickens with the clusters from India, China, Myanmar and Laos, and indicated the dispersion of BD chickens from these sources. The phylogenetic information revealed high genetic diversity of BD chickens because of their origin from different lineages with high genetic variation and distance, which was determined from four cluster and neighbour-joining trees.4. In conclusion, BD populations had high genetic diversity. The mtDNA network profiles and phylogenetic trees showed multiple maternal origins of BD chickens from India, China, Myanmar and Laos. 相似文献
The aim of this study was to estimate genetic parameters for different precocious calving criteria and their relationship with reproductive, growth, carcass and feed efficiency in Nellore cattle using the single‐step genomic BLUP. The reproductive traits used were probability of precocious calving (PPC) at 24 (PPC24), 26 (PPC26), 28 (PPC28) and 30 (PPC30) months of age, stayability (STAY) and scrotal circumference at 455 days of age (SC455). Growth traits such as weights at 240 (W240) and 455 (W455) days of age and adult weight (AW) were used. Rib eye area (REA), subcutaneous fat thickness (SFT), rump fat thickness (RFT) and residual feed intake (RFI) were included in the analyses. The estimation of genetic parameters was performed using a bi‐trait threshold model including genomic information in a single‐step approach. Heritability for PPC traits was moderate to high (0.29–0.56) with highest estimates for PPC24 (0.56) and PPC26 (0.50). Genetic correlation estimates between PPC and STAY weakened as a function of calving age. Correlation with SC455, growth and carcass traits were low (0.25–0.31; ?0.22 to 0.04; ?0.09 to 0.18, respectively), the same occurs with RFI (?0.09 to 0.08), this suggests independence between female sexual precocity and feed efficiency traits. The results of this study encourage the use of PPC traits in Nellore cattle because the selection for such trait would not have a negative impact on reproductive, growth, carcass and feed efficiency indicator traits. Stayability for sexual precocious heifers (PPC24 and PPC26) must be redefined to avoid incorrectly phenotype assignment. 相似文献
1. The aim of the study was to estimate the heritability of the laying performance in the cumulative and partial production of eggs and predict the breeding values of native Zatorska geese in a conservation programme using Best Linear Unbiased Prediction (BLUP) methodology. Second, the trajectory of the egg production curve was examined.
2. The data contain information about the laying performance of 1831 individuals in the first year of laying. To describe the trajectory of the laying performance, 10 mathematical models were tested. For the genetic parameter estimation of egg production, data from 1038 birds were used with a production higher than 20 eggs during the first season of laying.
3. The analysis of egg production was based on single and multi-trait models. Heritability, genetic and phenotypic correlations between phases of the laying performance as well as breeding values were estimated.
4. The best adaptation to the goose egg laying curve was the Ali and Schaeffer model. The estimates of heritability were 0.20 (0.06 SE) using the single-trait model and ranged from 0.12 to 0.24 using the multi-trait model.
5. The results suggest that the BLUP method can support the conservation programme. 相似文献