葡萄EST-SNP位点的信息与特征

为了从不同基因型葡萄组织的表达序列标签(EST)中得到候选单核苷酸多态性(SNP)位点,从NCBI的dbEST数据库中下载来源于9个不同葡萄基因型的不同组织EST序列42 493条,利用CAP3软件拼接得到6 126个重叠群(contig),将拼接结果导入QualitySNP进行SNP筛选;同时,为提高候选SNP位点的可靠度,降低小规格contig开发SNP的假阳性率和大规格contig开发SNP的假阴性率,设置候选SNP位点的次要等位基因频率至少为30%,SNP侧翼序列保守度至少为5bp。结果表明:仅在1 195个contig中存在候选SNP位点,共5 032个,其中包括1 800个颠换类型,2 896个转换类型,336个单碱基的插入与缺失(indel),SNP的平均出现频率为4.2SNP.contig-1。利用CAPS(酶切扩增多态序列)分子标记和重测序方法对其中几个候选SNP位点进行验证表明,符合人工筛选原则且来自于小规格contig的候选SNP位点检测结果较好,可靠度最高。     

小麦RIL群体遗传连锁图谱的构建及其多态性分析

以普通小麦重组近交系(recombinant inbred lines,RIL)‘Q9086×陇鉴19’为作图群体,利用SSR标记构建小麦遗传连锁图谱.结果表明:通过选用2 187对SSR引物筛选出RIL群体双亲表现多态性的引物共405对,多态性频率为18.52%.不同类型SSR标记多态性频率从小到大依次为Xpsp(4.4%)相似文献   

微粒体甘油三酯转运蛋白研究进展

从微粒体甘油三酯转运蛋白(MTP)结构、功能、活性与多态性、脂代谢中的作用、表达与调节等方面综述了微粒体甘油三酯转运蛋白是一种重要的脂质转运蛋白,着重论述了MTP与脂代谢关系、MTP表达与调节.MTP的活性、基因表达状态是控制极低密度脂蛋白合成、装配和分泌速率的重要因素,研究MTP基因表达与调节对预防动物脂肪肝、提高畜禽生产品质,探讨人类脂类代谢性疾病和心血管疾病等重要疾病形成机制,对防治这些疾病具有重要的临床意义.     

贵州地方猪BF基因的群体遗传特性分析

以BF基因为候选基因,利用PCR和直接测序技术对贵州白香猪、可乐猪、大约克猪3个品种共95个个体BF基因外显子15、16、17的733 bp进行多态性分析,并对不同品种进行群体遗传学分析。结果显示:在第16外显子45 bp处存在A→C的碱基突变,命名为BF-exon16-A45C,导致编码的氨基酸由谷氨酸(Glu)突变为天冬氨酸(Asp);在贵州白香猪和可乐猪群体内均检测到AA、AC和CC三种基因型,在大约克猪群体内只检测到AC和CC两种基因型,贵州白香猪处于低度多态,可乐猪和大约克猪处于中度多态。经χ2适合性检验表明:贵州白香猪在该位点偏离了Hardy-Weinberg遗传平衡状态,可乐猪和大约克猪均处于Hardy-Weinberg遗传平衡状态。     

Genetic characterization of Portuguese brown trout (Salmo trutta L.) and comparison with other European populations

Abstract– Allozyme and other protein loci were examined to study the genetic structure of Portuguese brown trout ( Salmo trutta ) populations. A total of 247 individuals from three tributaries of the Lima hydrological basin and a hatchery, all located in northern Portugal, were analyzed. Four of 22 protein coding loci were found to be polymorphic: CK-A1^*, GPI-A2^*, MPI-2^* and TF^*. A new allelc at the latter locus was found in Atlantic populations. The data obtained for Portuguese brown trout were compared with published data for 14 European populations and three hatchery stocks. Six polymorphic loci (CK-A1^*, GPI-A2^*, GPI-B2^*, LDH-C^*, ME^* and MPI-2^*) were used in a cluster analysis. This showed the similarity of Portuguese natural populations and northern Iberian populations and that Portuguese hatchery fish have an autochthonous origin, distinct from that of other Atlantic hatchery stocks.     

山丹马6-磷酸葡萄糖脱氢酶及葡萄糖磷酸异构酶的多态性研究

用淀粉凝胶电泳及琼脂覆盖技术对山丹马的血液红细胞6磷酸葡萄糖脱氢酶和葡萄糖磷酸异构酶的电泳变异进行了测定。在6磷酸葡萄糖脱氢酶座位发现了3种表现型,即FF,FD和FS,其频率分别为0.958,0.021和0.021。在葡萄糖磷酸异构酶座位发现了两种表现型,即II和FI,其频率分别为0.771和0.229。等位基因频率直接通过表型计算出:PGDF为0.979,PGDD为0.0104,PGDS为0.0104;GPIF为0.1146,GPII为0.8854。亲子关系排除概率在6PGD和GPI座位点分别为0.1009和0.0912。两座位的个体识别概率分别为0.081和0.353。     

Association of aster yellows subgroup 16SrI-B phytoplasmas with a disease of Rehmannia glutinosa var. purpurea

A new phytoplasma disease of Rehmannia glutinosa var. purpurea was observed in the Czech Republic in 1998. Infected plants showing severely proliferating shoots, leaves reduced in size with vein clearing and chlorosis, shortened internodes and virescent petals died in advanced stages of the disease. Electron microscopy examination of the ultra-thin sections revealed the presence of numerous polymorphic bodies in phloem tissue of leaf midribs and petioles. The disease was successfully transmitted from infected plant via a dodder bridge into periwinkle ( Catharanthus roseus ). The phytoplasma aetiology of this disease was further confirmed by polymerase chain reaction (PCR) using universal primers R16F2/R16R2. Restriction fragment length polymorphism (RFLP) analysis of amplification products indicated the presence of aster yellows related phytoplasmas (16SrI-B) in naturally infected samples of R. glutinosa var . purpurea and in symptomatic periwinkle after dodder transmission of the agent. A comparison of the amplified sequence with 17 sequences available in the GenBank confirmed the classification of the phytoplasma in the subgroup 16SrI-B. This is the first report of natural occurrence of phytoplasma-associated disease in R. glutinosa var. purpurea.     

Milk Protein Polymorphism in Kangayam Cattle

This paper reports the milk protein polymorphism, the allele frequencies of variants and the possible linkages among various combinations of milk protein phenotypes in the Kangayam cattle of south India. Milk samples from 156 Kangayam cows were typed by starch gel and polyacrylamide gel electrophoresis for caseins and whey proteins, respectively. All the four milk protein components studied, _s1-casein, -casein, -lactoglobulin and -lactalbumin, exhibited polymorphism with high allele frequencies of 0.9231±0.0151 for _s1-casein C, 0.9263±0.0148 for -casein A, 0.9135±0.0159 for -lactoglobulin B and a relatively high frequency of 0.6218±0.0275 for -lactalbumin A. The mean heterozygosity estimated over all the four milk protein loci was 0.2420. Genetic equilibrium was observed among all the loci studied, except -lactalbumin. Linkage analysis confirmed the non-independence between _s1- and -caseins and between caseins and -lactalbumin phenotypes.