Genetics of grains per spike in durum wheat under normal and late planting conditions

Parental, F₁, F₂, BC₁, BC₂, BC₁₁, BC₁₂, BC₂₁, BC₂₂, BC₁ self and BC₂ selfed generations of three crosses involving six cultivars of durum wheat (Triticum durum Desf.) were studied for grains per spike under normal and late sown environments to analyze the nature of gene effects. A 10-parameter model did not fully account for the differences among the generation means. In two cases more complex interactions or linkage were involved in the inheritance of grains per spike in durum. Both digenic and trigenic epistatic interactions had a role in controlling the inheritance of grains per spike, however, trigenic interactions contributed more than digenic interactions. Non-fixable gene effects were many times higher than fixable ones in all three crosses and in both sowing environments indicating a major role of non-additive gene effects in the inheritance of this trait. Duplicate epistasis between sets of three genes under both environments was recorded for the cross Raj 911 × DWL 5002. Epistatic interactions, particularly the trigenic ones, contributed the maximum significant heterosis. Epistatic interactions involving dominance in the F₂ generations caused significant inbreeding depression. Selective diallel mating and/or biparental mating could be used for amelioration of grains per spike in durum wheat.     

Estimation of additive and non-additive genetic effects for fertility and reproduction traits in North American Holstein cattle using genomic information

Non-additive genetic effects are usually ignored in animal breeding programs due to data structure (e.g., incomplete pedigree), computational limitations and over-parameterization of the models. However, non-additive genetic effects may play an important role in the expression of complex traits in livestock species, such as fertility and reproduction traits. In this study, components of genetic variance for additive and non-additive genetic effects were estimated for a variety of fertility and reproduction traits in Holstein cattle using pedigree and genomic relationship matrices. Four linear models were used: (a) an additive genetic model; (b) a model including both additive and epistatic (additive by additive) genetic effects; (c) a model including both additive and dominance effects; and (d) a full model including additive, epistatic and dominance genetic effects. Nine fertility and reproduction traits were analysed, and models were run separately for heifers (N = 5,825) and cows (N = 6,090). For some traits, a larger proportion of phenotypic variance was explained by non-additive genetic effects compared with additive effects, indicating that epistasis, dominance or a combination thereof is of great importance. Epistatic genetic effects contributed more to the total phenotypic variance than dominance genetic effects. Although these models varied considerably in the partitioning of the components of genetic variance, the models including a non-additive genetic effect did not show a clear advantage over the additive model based on the Akaike information criterion. The partitioning of variance components resulted in a re-ranking of cows based solely on the cows’ additive genetic effects between models, indicating that adjusting for non-additive genetic effects could affect selection decisions made in dairy cattle breeding programs. These results suggest that non-additive genetic effects play an important role in some fertility and reproduction traits in Holstein cattle.     

QTL Detection and Epistasis Analysis for Heading Date Using Single Segment Substitution Lines in Rice （Oryza sativa L.）

Heading date of rice is a key agronomic trait determining cultivated areas and seasons and affecting yield. In the present study, ifve primary single segment substitution lines with the same genetic background were used to detect quantitative trait loci （QTLs） for heading date in rice. Two QTLs, qHD3 and qHD6 on the short arm of chromosome 3 and the short arm of chromosome 6, respectively, were identiifed under natural long-day （NLD）. Nineteen secondary single segment substitution lines （SSSLs） and seven double segments pyramiding lines were designed to map the two QTLs and to evaluate their epistatic interaction between them. By overlapping mapping, qHD3 was mapped in a 791-kb interval between SSR markers RM3894 and RM569 and qHD6 in a 1 125-kb interval between RM587 and RM225. Results revealed the existence of epistatic interaction between qHD3 and qHD6 under natural long-day （NLD）. It was also found that qHD3 and qHD6 had signiifcant effects on plant height and yield traits, indicating that both of the QTLs have pleiotropic effects.     

Inheritance of Striga hermonthica adaptive traits in an early‐maturing white maize inbred line containing resistance genes from Zea diploperennis

Striga hermonthica can cause as high as 100% yield loss in maize depending on soil fertility level, type of genotype, severity of infestation and climatic conditions. Understanding the mode of inheritance of Striga resistance in maize is crucial for introgression of resistance genes into tropical germplasm and deployment of resistant varieties. This study examined the mode of inheritance of resistance to Striga in early‐maturing inbred line, TZdEI 352 containing resistance genes from Zea diploperennis. Six generations, P₁, P₂, F₁, F₂, BC₁P₁ and BC₁P₂ derived from a cross between resistant line, TZdEI 352 and susceptible line, TZdEI 425 were screened under artificial Striga infestation at Mokwa and Abuja, Nigeria, 2015. Additive‐dominance model was adequate in describing observed variations in the number of emerged Striga plants among the population; hence, digenic epistatic model was adopted for Striga damage. Dominance effects were higher than the additive effects for the number of emerged Striga plants at both locations signifying that non‐additive gene action conditioned inheritance of Striga resistance. Inbred TZdEI 352 could serve as invaluable parent for hybrid development in Striga endemic agro‐ecologies of sub‐Saharan Africa.     

甘蓝型油菜隐性上位互作核不育系9012A与6AB和S45AB遗传对比

研究结果表明：（１）甘蓝型油菜核不育系９０１２Ａ与显性上位互作核不育６ＡＢ在恢复关系上明显不同,是不同于显性上位互作核不育的一种新的互作核不育类型。其育性受２对隐性重叠不育基因与一对隐性上位抑制基因互作控制。（２）控制９０１２Ａ和Ｓ４５Ａ的不育基因是非等位的,在甘蓝型油菜中存在至少２套隐性重叠不育基因。进一步的研究显示隐性上位基因与隐性重叠不育基因之间的互作可能是非专一性的。这对现有双隐性核不育杂种优势利用具有重要的意义。     

Detection and characterization of epistasis between QTLs on plant height in rice using single segment substitution lines

Hua-jing-xian 74 and its 12 single segment substitution lines (SSSLs) in rice were used as crossing parents to construct a half diallel crossing population. A total number of 91 materials were grown under three planting densities. By analysis of average plant height (PH) over all environments 10 SSSLs were detected with significant additives and 6 SSSLs with significant dominances. These SSSLs were further tested under different densities respectively, indicating that some of single locus effects were sensitive to densities and the conditions under the density of 16.7 cm × 16.7 cm maybe inhibited the expressing of these PH QTLs. Qualitative and quantitative analyses of each four participating genotypes indicated that digenic interactions among these QTLs were prevalent. Of 66 tested interactions, about 42.4% were epistatic (P < 5%). Although some QTLs hadn’t single locus effects, they were possible to form digenic interactions. A significant finding was that the detected epistases were mostly negative. Additionally, these epistases were also found being sensitive to planting densities, the conditions under the density of 10 cm × 16.7 cm perhaps promoted the expressing of epistatic interactions among PH QTLs.     

水稻粒重及其相关性状的遗传解析

 应用292个 Lemont/ 特青F13重组自交系(RILs)和272个标记的遗传连锁图谱分析粒重及籽粒长、宽、厚、长/宽、体积和容重6个相关性状的遗传。所有性状在RILs中出现超亲分离。粒重与其他籽粒性状均呈显著正相关，而涉及籽粒品质的容重与粒宽、粒厚呈显著负相关。检测到影响粒重及其相关性状的主效QTL 48个和互作位点38对，这些QTL解释了各性状55%以上的表型变异。80%以上的主效QTL呈现一因多效或生理相关。QGl3和 QGl2等通过籽粒体积间接影响粒重， Lemont增效等位基因有利于籽粒品质的改良，而QGw5、QGt1和QGv7的特青增效等位基因增加粒重同时降低籽粒容重及品质。通过标记辅助选择进行不同QTL的重组，有望在增加粒重的同时改善籽粒品质。     

Epistasis in the resistance of pepper to phytophthora stem blight (Phytophthora capsici L.) and its significance in the prediction of double cross performances

Summary Epistatic effects are present in the resistance to Phytophthora capsici in peppers (Capsicum annuum). Genetic statistical analysis shows that additive by additive epistasis as well as higher order epistatic effects contribute to the total variation of resistance, significantly. Higher order epistatic effects caused bias in the prediction of the performance of double crosses, the difference between observed and predicted performances being significant.The relative importance of higher order epistasis with respect to additive by additive epistasis seems to be correlated with the aggressiveness of the isolate of Phytophthora capsici.     

Breeding strategies for seed protein content and trypsin inhibitors inferred from combining ability and heterosis in test-crosses of Vicia faba

The relative importance of general and specific combining ability (GCA and SCA, respectively), amount and causes of heterosis and inferences for breeding strategies were assessed for trypsin inhibitors activity (TIA) and seed protein content (SPC) in Vicia faba test-crosses. Four lines with low (‘Bond’) and high (‘H2OS’, ‘98/Tunesien’ and ‘Canner Express’) TIA, and two testers (‘Rowena’ and ‘Felicia’) with low TIA were used to produce test-crosses. GCA accounted for 89% and 57% of the test-cross sums of squares for SPC and TIA, respectively; SCA accounted for 48% and 34%, and differences between reciprocals for 6% and 9%. Specific heterosis was large only in low TIA × low TIA test-crosses and tended towards an increased TIA. Epistatic interaction explained the observed specific heterosis for high TIA. Breeding faba bean hybrids for high SPC and low TIA is not convenient because non-additive gene actions exert minimal effects on SPC or are in the undesired direction for TIA. Selecting inbred lines which combine low TIA, good SPC and satisfactory grain yield is more promising] Rowena and Rowena × Bond are adequate as base materials.     

Two major genes for seed size in chickpea (Cicer arietinum L.)

Summary Seed size as determined by seed weight, is an important trait for trade and component of yield and adaptation in chickpea (Cicer arietinum L.). Inheritance of seed size in chickpea was studied in a cross between ICC11255, a normal seed size parent (average 120 mg seed⁻¹) and ICC 5002, a small seed size parent (average 50 mg seed⁻¹). Seed weight observations on individual plants of parents, F₁, F₂, and backcross generations, along with reciprocal cross generations revealed that the normal seed size was dominant over small seed size. No maternal effect was detected for seed size. The numbers of individuals with normal, small and medium (average 150 mg seed⁻¹) seed sizes in F ₂ population were 1237, 323 and 111 fitting well to the expected ratio of 12:3:1 (χ² = 0.923, P = 0.630). The segregation data of backcross generations also indicated that seed size in chickpea was controlled by two genes with dominance epistasis. We designate the genotype of ICC 11255 as Sd ₁ Sd ₁ sd ₂ sd ₂, and ICC 5002 as sd ₁ sd ₁Sd₂ Sd ₂ wherein Sd ₁ is epistatic to Sd ₂ and sd ₂ alleles.