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61.
基于26个微卫星标记的三江水系草鱼遗传多样性分析 总被引:2,自引:2,他引:2
选取26个微卫星标记对来自长江(监利、邗江)、黑龙江、珠江3个水系的4个野生草鱼(Ctenopharyngodon idellus)群体的遗传多样性进行了检测。结果表明,26个微卫星位点均为高度多态位点,草鱼4个地理群体的多态信息含量(PIC)平均值为0.581 3~0.638 6;共检测出141个等位基因,其中有102个为共有等位基因;每个位点有等位基因2~11个,平均等位基因5.46,平均有效等位基因3.455 6。4个地理群体野生草鱼的平均杂合度在0.711 4~0.804 5之间。群体间遗传固定指数(FST)及AMOVA分析表明,群体间遗传分化并不显著(FST=0.031 73)。基于DA遗传距离构建的UPGMA聚类树表明,监利群体与邗江群体这两个长江水系野生地理群体聚为一支,然后与珠江群体聚为一支,黑龙江群体单独聚为一支。长江群体是原始群体。综上所述,三江水系野生草鱼具有较高的遗传多样性,4个群体之间遗传分化并不明显。 相似文献
62.
Kyung-Ho Ma Jae-Gyun Kwag Weiguo Zhao Anupam Dixit Gi-An Lee Haeng-Hoon Kim Ill-Min Chung Nam-Soo Kim Jae-Sun Lee Jae-Jun Ji Tae-San Kim Yong-Jin Park 《Scientia Horticulturae》2009,122(3):355-361
Here we characterized eight novel polymorphic SSR markers, developed from an enriched genomic library of garlic (Allium sativum L.). These SSRs produced a total of 64 alleles across 90 garlic accessions, with an average of 8 alleles per locus. Values for observed (HO) and expected (HE) heterozygosity ranged from 0.16 to 0.77 (mean = 0.44) and from 0.22 to 0.86 (mean = 0.65), respectively. Six loci deviated significantly (P < 0.05) from Hardy–Weinberg equilibrium (HWE). The averages of gene diversity and PIC values were 0.65 and 0.62, respectively. The mean genetic similarity coefficient was 0.4380, indicating that among garlic accessions existed wide genetic variation. Based on 64 alleles obtained by 8 SSRs, a phenogram was constructed to understand the relationships among the 90 accessions. These newly developed SSRs should prove very useful tools for genotypes identification, assessment of genetic diversity and population structure in garlic. 相似文献
63.
Mohamed Mahmoud Sidina Mohammed El Hansali Nadia Wahid Aziz Ouatmane Abdelali Boulli Abdelmajid Haddioui 《Scientia Horticulturae》2009,123(1):110-116
The carob tree (Ceratonia siliqua L.) is an important economic resource for Morocco's rural populations. This species is used in reforestation actions and its cultivation in modern orchards is being undertaken to valorize marginal lands and substitute for drought sensitive species. However, little data is available on its intra-specific variability and its adaptability. Morphological characters of pods and seeds from 13 ecoregions of private-domesticated carob were used to assess phenotypic variation of this species. These stands extend from south-west to north-east and cover a wide range of Morocco's ecoregions. Pods length, width, thickness, seeds number, pulp weight, seeds yield and seeds length, width, thickness and weight were measured for 390 trees (30 trees per ecoregion). Statistically significant differences were found between ecoregions for all characters which were examined, what indicates a high phenotypic diversity. Principal component analysis (PCA) and hierarchical cluster of all ecoregions lead to identify two major and opposite groups (the northern ecoregions; and the central and south-western ecoregions). Ecoregions of the north of Morocco exhibited the largest and the thickest pods with the highest pulp weight while other ecoregions have relatively short pods but largest proportion of seed yield. Similarly, the northern ecoregions are characterized by the heaviest seeds. A correlation matrix between morphological characters, geographic parameters and precipitation exhibits a positive and a negative correlation of pods thickness and pulp weight with the latitude and the altitude, respectively. Seed yield and weight are negatively and positively correlated to pod width, pod thickness and pulp weight, respectively. In addition, seed weight is positively correlated with the latitude. The geographic pattern of the carob tree and its variability are discussed in this paper. 相似文献
64.
N. Zoghlami L. Riahi V. Laucou T. Lacombe A. Mliki A. Ghorbel P. This 《Scientia Horticulturae》2009,120(4):479-486
Ten SSR loci, previously developed for grapevine, were analyzed to evaluate the genetic variability, cultivar relatedness, and parentage in a collection of 61 autochthonous Vitis vinifera cultivars from Tunisia.The number of alleles per locus ranged from 6 to 11, while the number of genotype patterns varied between 10 and 21. The expected heterozygosity varied between 0.621 and 0.855 and the observed heterozygosity was higher than 0.9 at 4 loci (VVMD28, VVMD5, VVIP31 and VVS2) indicating that the SSRs were highly informative.Cluster analysis using unweighted pair group method with arithmetic averaging (UPGMA) suggested 14 groups among studied cultivars and 53 grapevine denominations out of 61 were unequivocally distinguished, with all accessions showing at least one-specific combination of alleles.On the other hand, in order to overcome the existing confusion in Tunisian grapevine nomenclature, of the analyzed homonymous pairs of cultivars, only ‘Balta 2’ and ‘Balta 3’ have shown identical allelic profiles, consistent with their being the same genotype. Hence, nomenclature distinction is meaningless and only one denomination should be retained.Due to the high overall power of exclusion (Q) (greater than 99.99%) and to the absence of null alleles, the set of microsatellite loci used is appropriate to determine parentage in Tunisian grapevines beyond any reasonable doubt. The analysis of fingerprints indicated that the Tunisian grape vines have evolved through out crossing between five possible parents: Balta 1, Beldi Baddar, Beldi Rafraf, Beldi Local Rafraf and Khedhiri 3. 相似文献
65.
胡椒EST-SSR标记的开发和应用 总被引:1,自引:0,他引:1
通过分析NCBI数据库中胡椒转录组数据,共得到unigene 23 524条,其中618条unigene中检测到643个EST-SSR位点,SSR发生频率为2.63%,平均分布距离为12.86 kb。在643个EST-SSR中,二、三核苷酸重复是主要重复类型,分别占27.84%和69.36%,其中(AG/CT)n、(AAG/CTT)n出现频率最高,(NNN/NNN)5类型占EST-SSR位点的42.90%。利用PRIMER3.0设计358对引物,随机合成45对引物,并选用其中11对扩增较好的多态性引物,对43份胡椒种质的遗传多样性进行初步检测,构建聚类分析树状图。结果说明,胡椒EST-SSR标记的开发是可行的,并能够有效的用于胡椒遗传分析研究,具有较高的应用价值。 相似文献
66.
67.
中加燕麦种质的遗传多样性和群体结构分析 总被引:2,自引:0,他引:2
为揭示燕麦种质资源的遗传基础,采用内含子切接点引物和长随机引物的PCR分子标记技术,对加拿大和中国的64份燕麦种质的遗传多样性和群体结构进行了分析.结果表明,所用15条引物共扩增出171条带,平均每条引物扩增出11.4条带,其中多态性带共134务,多态性百分比为78.36%.燕麦各种质阃的Dice遗传相似系数分析表明,所有燕麦材料间的遗传相似系数变幅为0.699~0.934,平均值为0.81,表明参试燕麦种质间存在着一定的遗传差异,但遗传差异相对较小.群体结构分析结果表明,所研究的燕麦种质中81.25%的种质血缘相对比较单一,仅18.75%的种质拥有混合来源. 相似文献
68.
SSR标记对野生大豆种群遗传结构的研究 总被引:1,自引:1,他引:1
使用40对SSR引物分析了8个省区天然野生大豆种群的遗传结构和遗传多样性.结果表明:15个种群共检测到633个等位基因,平均每对引物等位变异基因数平均值15.83个;种群平均Shannon指数(Ⅰ)0.7835,种群平均期望杂合度(He)0.4070,种群平均观察杂合度(Ho)0.0012,平均种群内遗传多样度(Hs)... 相似文献
69.
利用SSR标记对北美温带玉米杂交种选育的24个自交系和我国生产应用的10类骨干代表系进行遗传多样性评价。结果表明,54对SSR引物在48份玉米自交系间共检测到290个等位基因变异,每对引物检测出3~9个等位基因,平均为5.4个。每个位点的多态性信息量(PIC)变化于0.29~0.86之间,平均为0.70。标记索引系数(MI)变化范围0.86~7.45,平均为3.86。供试北美温带选系和其他类群的玉米种质均具有较丰富的遗传多样性。3个杂交种选系的遗传相似系数中3号选系最小(0.776),说明3号较其余两个杂交种选系的遗传差异大。根据SSR标记聚类分析、主坐标分析和遗传进化分析结果表明,北美温带选系和其他种质的48份玉米自交系划分为6大类群,分类结果与系谱来源基本一致。 相似文献
70.
Jia-Rui Wu Fang-Ji Xu Wei Cao Wei Zhang Chuan-Chao Dai 《Archives of Agronomy and Soil Science》2019,65(2):240-252
Previously, the application of the fungal endophyte Phomopsis liquidambari B3 exhibited notable effect in alleviating soil obstacles caused by continuous cropping of peanut. It was supposed that P. liquidambari B3 could enhance the efficiency of nodulation and nitrogen fixation by enriching the diversity of nodular endophytic bacteria under continous monocropping system. To verify this hypothesis, a pot experiment was conducted under natural conditions. Four treatments were set as follow: discontinuous cropping soil (NS), continuous cropping soil (CK), continuous cropping soil inoculate with actived P. liquidambari B3 (CSB3), and continuous cropping soil inoculate with sterilized P. liquidambari B3 (CSIB3). As a result, a total of 120 isolates were obtained. Our study clearly declared that the addition of fungal endophyte effectively enriched the genetic diversity and the community composition in CSB3. In contrast, a low genetic diversity level and simplex community structure were exhibited in CK and CSIB3. Meanwhile, the positive percentage rate and corresponding community composition of the plant growth-promoting isolates in NS and CSB3 were larger and more abundant than the other. This is the first time to describe the effects of fungal endophytes on the diversity of the nodular culturable endophytic bacteria associated with continuous cropping of peanut. 相似文献