Assessing vulnerability of New Zealand lakes to loss of conservation value from invasive fish impacts

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Comparison of traditional and environmental DNA survey methods for detecting rare and abundant freshwater fish

1. Detecting rare species is often a necessity for conservation and management, yet challenging for many field survey methods. Environmental DNA (eDNA) is a highly promising solution that has been shown to outperform many established survey methods.
2. Macquarie perch (Macquaria australasica) is an endangered native species that has declined significantly in range and abundance. Detection of M. australasica was compared with an abundant alien fish species (Oncorhynchus mykiss) using eDNA and three conventional survey methods: gill nets, electrofishing and fyke nets.
3. eDNA occupancy estimates for both fish species were compared using four different models to investigate what effect these differences have on false positives and false negatives for the rare and common fish species. These models used unadjusted eDNA detections in water samples, eDNA detections that have been screened using a limit of detection method to remove potential false positives, eDNA data supplemented with a second survey method, or eDNA data augmented with sequencing of positive polymerase chain reaction replicates.
4. eDNA surveying as a single detection method was found to be more efficient and sensitive compared with each capture method separately and combined. Occupancy estimates for the common and rare species did not vary significantly between the four site occupancy-detection models, suggesting that supplementary data may not have as much effect on occupancy estimates compared with other approaches such as temporal or spatial sampling.
5. We conclude that eDNA outperforms the three established survey methods for both a rare and common freshwater fish species. Although there was no significant effect of augmenting eDNA survey methods with other survey data, additional data may improve confidence in detection, and provide confirmatory evidence for unexpected or new detections of a species.

     

Amazon floodplain hydrology and implications for aquatic conservation

1. The amplitude, duration, frequency, and predictability of runoff and inundation of aquatic habitats are key hydrological characteristics linked to aquatic ecosystem functioning and biodiversity, but they are seldom integrated into analyses of Amazon floodplain ecology. Remote sensing approaches, measurements and modelling of floodplain hydrology provide a basis for this integration.
2. Effective legislation to protect floodplains and other wetlands depends on operational definitions that require application of hydrological data.
3. Extent and changes of flooded areas are linked to fish diversity and to presence and growth of flooded forests and floating plants.
4. Dam construction reduces river system connectivity and modifies the flood pulse, with major negative implications for floodplain ecosystems adapted to and dependent on a natural flood regime.
5. Trends and variability in climate plus deforestation are altering the Amazon's hydrological cycle, causing changes in discharge and flooded area with concomitant ecological impacts.

     

Riparian restoration offsets predicted population consequences of climate warming in a threatened headwater fish

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Longer migration not necessarily the costliest strategy for migrating humpback whales

1. Long‐distance migration is a demanding physical activity, and how well animals manage the associated costs will have important implications for their fitness.
2. The Oceania humpback whale (Megaptera novaeangliae) population is recovering from past exploitation markedly slower than the neighbouring east Australian whales. The reasons for this are unknown, although higher energetic costs of longer migratory distances could be a possible explanation. Due to their fully aquatic lives, studying the energy expenditure of these large animals requires methods that do not rely on capturing the animal, such as bioenergetic models.
3. A state‐space model was fitted to satellite data to infer behavioural states for southern migrating whales. Travel speeds and behavioural states were used in a bioenergetic model to estimate the energetic cost of the migration phase. Relative differences in average duration, distance, and energetic costs were compared between migratory routes and distances.
4. Total energy used during migration was a trade‐off between cost of transport (determined by travel speed) and daily maintenance (determined by daily basal metabolic costs). Oceania whales migrating to the Amundsen and Bellingshausen Seas travelled fastest and furthest, 15 and 21% further than whales migrating to the d'Urville Sea (east Australian whales) and Ross Sea, respectively. Therefore, they had the highest cost of transport, 25 and 85% higher than for d'Urville Sea and Ross Sea whales, respectively. However, energy saved in terms of daily maintenance by using fewer days to complete a longer migration resulted in only a 6–7% increase in total energetic cost.
5. The results highlight that travelling further does not necessarily translate into an increase in total energy expenditure for migratory whales, since they can compensate for longer distance by travelling faster. Further research on the energetics of different whale populations could provide insight into the productivity of Southern Ocean feeding regions and help understand the environmental and anthropogenic effects on the whales' energy budgets.

     

Historical and contemporary habitat use of sperm whales around the Galápagos Archipelago: Implications for conservation

1. Sperm whales have occupied the waters off the Galápagos Islands, Ecuador, for at least the past 200 years. During the 19^th century, they were the target of intensive whaling that severely depleted the population. In recent times, after commercial whaling ended, sperm whales in the region remain vulnerable to multiple threats, especially potential entanglement in fishing gear, which may hinder their ability to recover from the whaling era.
2. As a highly mobile, long-lived species, long-term analysis of the habitat use of sperm whales is necessary to establish effective conservation and management strategies. Here, contemporary (1985–2014) and historical (1830–1850) sperm whale habitat use off the Galápagos Islands was analysed and contrasted to the extent of the Galápagos Marine Reserve (GMR). Contemporary habitat use and its variability over time were modelled as a function of geographic, oceanographic, and topographic variables using generalized additive models.
3. The fine-scale habitat (<50 km) used by sperm whales was associated with topographic (i.e. depth and slope) and oceanographic characteristics (i.e. relative sea surface temperature and standard deviation of sea surface temperature), but these preferences varied over time.
4. While historical and contemporary data indicate that sperm whale habitat primarily occurred within the boundaries of the GMR, in recent years, whales were found up to 30.1% of the time outside the GMR, potentially overlapping with commercial fisheries operating in the area.
5. The dynamic nature of the relationship of this nomadic species with its habitat highlights the need of large-scale conservation efforts across the Eastern Tropical Pacific region, including the wide-scale enforcement of regulations requiring the use of Automatic Identification System in fishing vessels, the promotion of on-board fisheries observer programmes, the development of adaptive management strategies, and international collaboration to identify and mitigate threats.

     

From shallow to deep waters: habitats used by larval lampreys (genus Petromyzon and Lampetra) over a western European basin

Abstract –  Habitat requirements of lamprey ammocoetes (Petromyzon marinus and Lampetra genus) were investigated, for the first time, from shallow to deep waters, at different spatial scales across the Gironde‐Dordogne continuum, thanks to a water suction dredge. Fish‐habitat relationships were assessed through two complementary statistical analyses: habitat‐use curves and habitat suitability models using the Boosted Regression Trees (BRT) technique. Analyses were performed on a small‐size data set that was characterised by the low prevalence of lamprey. The sea lamprey larvae occurred in deeper areas than their Lampetra genus counterparts. ‘Pools’ of 2 m’ depth and more were optimal habitats for the former species. Among the environmental variables retained to model lamprey occurrences, the mesohabitat (a categorical variable) was demonstrated to be highly influential, in terms of fine grain‐size substratum and vegetation cover. These preliminary results suggest that monitoring using the water suction dredge method may contribute to sea lamprey conservation.     

Do boating and basking mix? The effect of basking disturbances by motorboats on the body temperature and energy budget of the northern map turtle

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Predicting use of habitat patches by spawning horseshoe crabs (Limulus polyphemus) along a complex coastline with field surveys and geospatial analyses

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A first step towards improving copepod cultivation using modelling: the effects of density,crowding, cannibalism,tank design and strain selection on copepod egg production yields

Copepods are the optimal live feed for hatcheries and improvement of cultivation techniques, to provide a constant food source, is crucial for the expansion of the industry. However, studies based on experimental work and real observations can be labour intensive and expensive. A simple model was developed based on the well‐known life history traits of Acartia tonsa to describe batch cultures and their productivity. Model results were compared to observations from real cultures. For maximizing egg production yields, the optimal stocking density of copepods should be adapted to the design (depth) of the culture tanks. At high densities, stress due to encountering conspecifics, as well as cannibalism of eggs by adults, limits egg production yields. Using this model, the potential selection efficacy of copepod strains was also evaluated in order to increase production yields. Selecting larger copepods increases the egg production per litre of culture, but decreases the optimal stocking density and the range of densities at which egg production yield is high, and vice‐versa. Selecting copepods that are less affected by stress due to conspecifics only affect production yields at very high adult densities. However, selecting copepods with a high Specific Growth Rate (SGR), or improving their SGR, was found to be an alternative which did not affect the optimal cultivation densities but improved egg production yields.