The microbial habitat in soil: Scale,heterogeneity and functional consequences

The microbial habitat is rarely studied in soil microbial ecology even though microbial cells are exposed and adapt to their local environmental conditions. The physical environment also constrains interactions among organisms. The nature of microbial communities and their functioning can only be fully understood if their habitat is accounted for. Here, I describe the soil microbial habitat and show how our understanding of microbial functioning has been shaped by this line of investigation.     

Ecotourism in nature reserves in China: current situation, problems and solutions

Our presentation focuses on some important issues associated with ecotourism in nature reserves in mainland China. Conducting ecotourism in certain areas in nature reserves is important for its protection. However, some problems do exist because of special conditions in our society and in the current projects of nature reserves themselves, such as water and air pollution, unplanned construction of roads and facilities, damage of core zones and buffer zones, and confused ownership of nature reserves. These problems are discussed and solutions are proposed in detail, and we emphasize the participation of local communities in order to help residents fight against poverty.     

Rural America and Global Restructuring Information and Rural Change

ABSTRACT

Rural America has disadvantages of distance, scale, and weak linkages, which are further exacerbated by global economic restructuring. These disadvantages are manifest in the increasing urban rural differentiation, including higher rates of poverty and increasing cultural clashes. The nature of work in rural areas, as it is both experienced and perceived, shape the possibilities of rural areas to generate and control change. Both information and new institutions to provide the education to utilize it are needed. Delivery of information and education must take into account the great diversity of rural America and the growing inequality within it.     

Rain Use Efficiency,Primary Production and Rainfall Relationships in Desert Rangelands of Tunisia

Desert rangelands are characterised by low and highly variable rainfall regime, low forage production and high heterogeneity in the distribution of natural resources. This study was carried out in the desert rangelands of Tunisia to evaluate the response of different rangelands to annual rainfall in terms of aboveground net primary production (ANPP) and rain use efficiency over a 10‐year period (2003–2012). In general, ANPP values were relatively low (123 kg DM ha⁻¹ y⁻¹) but would tend to increase with increasing annual rainfall for all rangeland types. The highest value of ANPP was observed from Stipagrostis pungens and Hammada shmittiana communities (sandy‐soil) during the wet year 2011. In contrast, rain use efficiency tends to decline with the highest annual rainfall and varies among rangeland types and with an average of 1·9 kg DM ha⁻¹ mm⁻¹ y⁻¹. Rain use efficiency tended to be higher during dry years and lower during wet years and tended to be higher on S. pungens and H. shmittiana (sandy‐soils) and lower on Helianthemum kahiricum (loamy soils). Therefore, understanding how rainfall affects productivity in rangelands is critical for predicting the impact of land degradation on the functioning of these ecosystems. It can be used to explain production decline associated with desertification as well as to assess rangeland conditions. Copyright © 2015 John Wiley & Sons, Ltd.     

The Tripartite Symbiosis Formed by Indigenous Arbuscular Mycorrhizal Fungi, Bradyrhizobium japonicum and Soya Bean Under Field Conditions

The tripartite symbiosis formed by indigenous arbuscular mycorrhizal fungi (AMF), Bradyrhizobium japonicum (Kirchner) Jordan and soya bean (Glycine max L. Merr. cv. Evans) was investigated under field conditions to test the hypotheses that: (i) the tripartite symbiosis enhances nodulation and nodule activity; and (ii) its establishment does not rely on improved phosphorus (P) uptake through the fungal partner. Soil tillage was used to produce treatments with contrasting AMF colonization potentials while the amount of B. japonicum inoculum was kept constant. Nodulation, AMF colonization and the P and nitrogen (N) nutrition of plants were evaluated at 10 and 51 (full‐bloom) days after emergence. N₂ fixation was estimated by the difference method and by the isotopic dilution method. At the early stage of plant growth, AMF hyphal colonization and nodulation were, respectively, 16 % and 33 % greater in plants from untilled than from rototilled soil. The establishment of the tripartite symbiosis was observed under field conditions, and factors other than P nutrition were critical to its formation. However, the tripartite symbiosis did not promote N₂ fixation under the high soil P conditions of this study.     

Functional diversity of microbial communities in the mixed boreal plain forest of central Canada

This study was designed to examine whether or not specific tree species (Picea glauca, Picea mariana, Pinus banksiana, Populus tremuloides), their post-fire stand age, or their position in a successional pathway had any significant effect on the functional diversity of associated soil microbial communities in a typical mixed boreal forest ecosystem (Duck Mountain Provincial Forest, Manitoba, Canada). Multivariate analyses designed to identify significant biotic and/or abiotic variables associated with patterns of organic substrate utilization (assessed using the BIOLOG™ System) revealed the overall similarity in substrate utilization by the soil microbial communities. The five clusters identified differed mainly by their substrate-utilization value rather than by specific substrate utilization. Variability in community functional diversity was not strongly associated to tree species or post-fire stand age; however, redundancy analysis indicated a stronger association between substrate utilization and successional pathway and soil pH. For example, microbial communities associated with the relatively high pH soils of the P. tremuloides-P. glauca successional pathway, exhibited a greater degree of substrate utilization than those associated with the P. banksiana-P. mariana successional pathway and more acidic soils. Differences in functional diversity specific to tree species were not observed and this may have reflected the mixed nature of the forest stands and of their heterogeneous forest floor. In a densely treed, mixed boreal forest ecosystem, great overlap in tree and understory species occur making it difficult to assign a definitive microbial community to any particular tree species. The presence of P. tremuloides in all stand types and post fire stand ages has probably contributed to the large amount of overlap in utilization profiles among soil samples.     

Long-term impact of fertilization on activity and composition of bacterial communities and metabolic guilds in agricultural soil

To explore long-term impact of organic and inorganic fertilizers on microbial communities, we targeted both the total bacterial community and the autotrophic ammonia oxidizing bacteria (AOB) in soil from six treatments at an experimental field site established in 1956: cattle manure, sewage sludge, Ca(NO₃)₂, (NH₄)₂SO₄, unfertilized and unfertilized without crops. All plots, except the bare fallows, were cropped with maize. Effects on activity were assessed by measuring the basal respiration and substrate induced respiration (SIR) rates, and the potential activity of the AOB. To determine the bacterial community composition, 16S rRNA genes were used to fingerprint total soil communities by terminal restriction fragment length polymorphism analysis and AOB communities by denaturing gradient gel electrophoresis. The fertilization regimes had clear effects on both activity and composition of the soil communities. Basal respiration and r, which was kinetically derived as the exponentially growing fraction of the SIR-response, correlated well with the soil organic C content (r=0.93 and 0.66, respectively). Soil pH ranged from 3.97 to 6.26 in the treatments and was found to be an important factor influencing all microbial activities. pH correlated negatively with the ratio between basal respiration and SIR (r=0.90), indicating a decreased efficiency of heterotrophic microorganisms to convert organic carbon into microbial biomass in the most acid soils with pH 3.97 and 4.68 ((NH₄)₂SO₄ and sewage sludge fertilized plots, respectively). The lowest SIR and ammonia oxidation rates were also found in these treatments. In addition, these treatments exhibited individually different community fingerprints, showing that pH affected the composition of AOB and total bacterial communities. The manure fertilized plots harbored the most diverse AOB community and the pattern was linked to a high potential ammonia oxidation activity. Thus, the AOB community composition appeared to be more strongly linked to the activity than the total bacterial communities were, likely explained by physiological differences in the populations present.     

Differences in the diversity of oribatid mite communities in forests and agrosystems lands

A field study was conducted in the province of Burgos (Castile, NW of Spain) to assess the role and influence of the different anthropic use of soil on the oribatid mite communities (Acari, Oribatida).Soil samples from 20 representative soil sites of the Castilian upland steppes, with cultured, pastureland or forest soil uses, were taken in spring and autumn 2000. Thereafter, soil samples were analysed in terms of their mesofaunal biodiversity, measured using the real and relative diversity of the oribatid mite communities.Collected individuals were identified to species level, being altogether 111 Oribatid species. Results from communities' ordination analysis showed clear gradients based on community variables. One of these was defined by plots with high values of diversity and species richness which correspond to the less anthropic natural soils, mainly oak forest. In contrast, the most anthropic agrosystems soils, including extensive cereal crops, most of them receiving only mineral fertilisation or having human management, were placed in opposite gradients. Differences in biodiversity between crop lands and natural soils were also confirmed by ANOVA. The seasonality, measured in terms of difference between spring and autumn plots, played a minimum role in explaining differences of diversity. Nevertheless autumn diversity values were slightly higher than those of spring, except for crops.     

Bird communities, roads and development: prospects and constraints of applying empirical models

Our objectives were to explain the prospects and constraints of applying empirical models that relate bird community metrics to broad-scale characteristics of roads and development. We explored the practical value of regression models that were derived for a large protected area in the Chihuahuan Desert. These models related bird species richness, relative abundance, or probability of occurrence to total length of roads within each of two spatial extents (1- and 2-km radii), distance to the nearest road, distance to the nearest development, or the two-way interactions of these variables. Empirical models can be used to inform conservation decisions, to parameterise simulation models for conservation planning, to identify threshold levels of road and development variables, and to determine the focus of management experiments for confirmatory hypothesis testing and improvement of model realism.