Analysis of the distribution of endemic and rare arthropods in high endemism areas of Algarve-South Portugal

The study of several arthropod groups in high endemism areas (HEA) of Algarve, the Southernmost province of Portugal, has revealed endemic species and species not yet recorded for the Portuguese fauna. The list includes 3 species of Isopoda endemic to Algarve, to Portugal or to the Iberian Peninsula, 2 species new to Portugal and 2 species new to the Iberian Peninsula; 2 species of Pseudoscorpiones not yet cited to Portugal; 11 species of Pauropoda new to Portugal, including one new species probably endemic; 15 species of Collembola endemic to the Portuguese or to the Iberian Peninsula faunas (Gama et al. 1997) and 37 species and 5 subspecies of Staphylinidae endemic to Algarve.With the exception of Collembola, which have been studied by us, the remaining groups have been submitted for study to several specialists.These findings heighten the biological richness of these areas of high endemism in terms of conservation of biological diversity. The authors draw attention to the necessity to preserve or restore the biological value of these areas, encouraging the adoption of protective measures and the creation of research programmes that include the implementation of taxonomic studies and co-operation between taxonomists and ecologists in order to preserve the biodiversity of these areas.     

Migration and escapement of silver eel males,Anguilla anguilla,from a southwestern European river

The catadromous life cycle of the European eel encompasses a spawning migration to the Sargasso Sea. Prior to their migration, eels develop a silver coloration being referred to as “silver eels.” Due to the dramatic European eel recruitment decline, it is crucial to quantify silver eel escapement to evaluate the success of measures taken under Eel Management Plans (Regulation EC (1100/2007)). Thus, the percentage of silver eels escaping from the River Mondego (Portugal) was estimated during two consecutive spawning seasons (2014–2016) and their migratory behaviour was studied. Thirty-six male silver eels were tagged with acoustic transmitters and their downstream migration was tracked using automatic receivers deployed at four locations along the river course, from the first impassable obstacle up to the river mouth (67 km). Among the tagged eels, 15 (42%) escaped to the sea. In both years, individuals displayed faster migration speed in the downstream reaches of the river. BRT (“Boosted Regression Trees”) models were used to explain downstream migration and escapement of silver eels. The analyses revealed that the downstream migration is triggered by several environmental variables with water conductivity as the most influential predictor. Escapement of eels from the estuary occurred a few hours after their arrival and was primarily explained by the offshore wind intensity, which promotes a current in the coast that may favour their transport to the open sea. These findings contribute to a better understanding of silver eel migration in southern latitudes and highlight and reinforce the need to monitor spawner escapement.     

Rickettsia lusitaniae sp. nov. isolated from the soft tick Ornithodoros erraticus (Acarina: Argasidae)

In this study a novel Rickettsia from the spotted fever group, isolated from Ornithodoros erraticus soft ticks collected from pigpens in the south of Portugal, is described. After initial screening revealed Rickettsia-positive ticks, isolation attempts were then performed. Successful isolates were achieved by shell-vial technique using Vero E6 cells at 28 °C. Molecular characterization of the isolate was performed based on analysis of five rickettsial genes gltA, ompA, ompB, sca1 and htr with their subsequent concatenation along with other rickettsial species resulting in a clustering of the new isolate with Rickettsia felis and Rickettsia hoogstraalii. The degree of nucleotide sequence similarity with other rickettsiae fulfills the criteria for classification of our isolate as a novel species. The name Rickettsia lusitaniae sp. nov. (= CEVDI PoTiRo) is proposed for this new species found in O. erraticus.     

Modelling bryophyte distribution based on ecological information for extent of occurrence assessment

For some groups such as bryophytes, the IUCN distribution criteria are of critical importance to evaluate threat status, since other parameters cannot be determined readily. In this study, we propose the use of ecological niche modelling methods to estimate the extent of occurrence (EOO) of species. Herbarium (LISU) collection data are used to estimate the potential distribution of bryophytes based on three different methods: GARP, MAXENT and ENFA. The records of bibliographic references were projected against model predictions, and used for validation purposes using the receiver operating characteristic (ROC) method, as well as knowledge about ecological and geographic affinities.Four species (Antitrichia californica, Riccia sommieri, Cryphaea heteromalla and Racomitrium hespericum) were chosen as case studies; they were selected to represent taxa with contrasting ecological requirements, biogeographic importance and conservation value. The main difference between the two approaches (topological and ecological) for determining EOO is that the former only consider species distribution in space, whereas ecological methods may include both spatial distribution as well as environmental ranges. The methodological advance presented here explores the links between population distribution and environmental data, filling the gaps between distribution and administrative borders.     

Higher taxa surrogates of spider (Araneae) diversity and their efficiency in conservation

A number of alternative approaches have been suggested during recent years to predict species richness of a given taxa, while retaining information on the identities of the observed individuals. Such information can be extremely useful for choosing conservation priority areas, either by using simple richness values or, preferentially, by considering the complementarity of potential sites. Among the most popular approaches is the use of higher taxa surrogates. Both family and genus richness are here tested in their ability to predict the number of spider (Araneae) species independently of sampling effort, geographical location and type of habitat. We use data from three Portuguese protected areas as a test case. Genus richness is considered a good surrogate of species richness, despite some caution being needed regarding the comparison of sites with considerably different sampling effort, the same not happening with families. Only genera are also found to be reliable either for ranking sites according to taxa richness or for determining near-minimum sets of sites for conservation. We therefore recommend surrogacy at this taxonomic level as a promising approach for the prediction of spider species richness or evaluation and ranking of areas according to their conservation importance. The reached conclusions should uphold for Portugal and the entire Mediterranean region.     

Molecular characterization of Portuguese strains of Yersinia ruckeri isolated from fish culture systems

A total of 23 Portuguese strains of Yersinia ruckeri , the causative agent of enteric redmouth disease (ERM), were comparatively studied by means of lipopolysaccharide (LPS) and outer membrane protein (OMP) analysis, plasmid profiling and ribotyping in order to investigate the heterogeneity among isolates and the usefulness of these methods as epidemiological markers. Only two LPS profiles were observed among the isolates studied, corresponding with the serotypes O1 and O3 of Y. ruckeri . A higher heterogeneity was detected analysing the OMP, seven different patterns being observed. Although some isolates carried different small plasmids, all the serotype O1 isolates showed a plasmid band of 50 MDa and all the serotype O3 strains shared in common a extrachromosomic DNA band of 30 MDa. The analysis of the ribopatterns obtained using three different enzymes, separated the strains into 10 ribotypes, indicating genetic heterogeneity among the isolates. The heterogeneity was greater within serotype O1 isolates, six ribotypes being detected, than within serotype O3 in which only three ribotypes were found. Although OMP analysis and ribotyping can be useful for the differentiation of strains on the basis of farm and/or season of isolation, we consider that ribotyping is the best candidate for epidemiological studies because it is easier to perform and offers a slightly better discriminative power.     

Temporal (1958–1995) pattern of change in a cultural landscape of northwestern Portugal: implications for fire occurrence

In this paper we test the hypothesis that landscape changes in a region of Northern Portugal (Minho) in the last 40 years could be predicted from socioeconomic and political history. The major predicted changes were related to agricultural abandonment and afforestation. We further predicted that these changes contributed to increased fire risk. Analysis of aerial photography for the years 1958, 1968, 1983 and 1995 in a study area of 3700 ha revealed a significant decline in agricultural areas and low shrublands and an increase in tall shrublands and forests. This represented a 20–40% increase in fuel accumulation at a landscape level, suggesting that the abandonment of farming activities is a major driving force of increasing fire occurrence in the region. With one exception, all the predictions were partly or totally confirmed. This study confirms that socioeconomic factors might explain a significant part of the variation in landscape composition across time, in the Mediterranean region.     

Topographical thresholds for ephemeral gully initiation in intensively cultivated areas of the Mediterranean

Ephemeral gullying is an important erosion process in Mediterranean areas suffering from land degradation because of increased drought and human impact. An ephemeral gully is formed when a hydraulic threshold for incision into a resistant soil surface is exceeded. The flow intensity at the soil surface of any landscape position is controlled by topographical parameters, such as local slope (S) and drainage-basin area (A). The objective of this study was to investigate to what extent one could use field measurements of S and A to predict the location of ephemeral gully initiation in intensively cultivated Mediterranean environments. Two relatively homogeneous study areas in Southeast Spain and Northeast Portugal with widespread ephemeral gullying were selected. S and A were measured by standard methods at the initiation point of 50 ephemeral gullies in each study area. The relationship between S and A was statistically investigated. On a double logarithmic scale, the S and A data showed considerable scatter. Orthogonal regression resulted in the threshold relationship S=aA^−b with b=0.133 for Spain, and b=0.226 for Portugal. The analysis also showed that S and A were weakly correlated for the Spanish dataset, and more strongly correlated for the Portuguese dataset. The correlation was considerably strengthened by including additional information on planform curvature and on tillage direction relative to the gully direction. Greater soil stoniness and the presence of a less permeable horizon generally increased the threshold level in both study areas. The threshold relationships resulting from this study were compared with literature data. The indices A_cS and ln(A_c/S) were applied to our study sites but neither relationship individually described the general trend between the data of S and A. Therefore, an alternative index, A_c^bS, with 0.133≤b≤0.226, according to the empirical trend between drainage basin area and local slope, was proposed to describe the topographical threshold conditions for ephemeral gully initiation in similar Mediterranean areas.     

Driving factors determining the occurrence of sodic soils in dry subhumid Mediterranean areas

An evaluation of the factors determining the occurrence and the properties of soils with low permeability occurring in vast areas in S Portugal was carried out taking into account the terrain morphology and the geology of the region. This paper deals with the variation patterns of the physical and chemical characteristics of soils from several soil toposequences that occur under different gradient slopes and on different parent rocks. Spatial variation of soil properties mainly depends on the composition of their cation‐exchange complex, as the role of other factors, such as the mineralogy of the clay fraction, were of minor importance. There is often a stronger increment of Na and/or Mg than of Ca with depth, causing a variable degree of sodicity in some of these soils, to which waterlogging tendency of their upper horizons is related. Though the occurrence of these features is determined by the nature of the parent rock, their degree of expression varies primarily according to the topographic position of soils. Therefore, a catenary distribution including nonsodic Cambisols or Luvisols in the hillcrests and Stagnic Solonetz or Sodic Luvisols or Sodic Stagnosols in the topographic lows is common. Such soil characteristics are of utmost importance for irrigation suitability and management of these soils, and for environmental impacts assessment, as the region is vulnerable to desertification.     

First isolation of Neospora caninum from the faeces of a dog from Portugal

We report the in vitro isolation of Neospora caninum from the faeces of a naturally infected 8-year-old male stray boxer from Portugal. Vero cell cultures were infected using parasite stages obtained after oral inoculation of γ-interferon knockout mice with 10² sporulated oocysts. The isolate was identified by microscopical examination, as well as histological, immunological and molecular methods including a DNA-microsatellite-based typing technique, and was subsequently named NC-P1. The DNA-microsatellite pattern observed in the NC-P1 isolate was not previously reported for any N. caninum isolate. To our knowledge, this is the first isolation of N. caninum from the faeces of a naturally infected dog from Portugal.