Establishment of a bank of positive controls for diagnosis of quarantine viruses and viroids in Brazil through PCR and RT-PCR

The analysis of plant materials such as seeds, seedlings and other units for vegetative propagation that are imported, before planting in the country, routinely transported across international borders, is essential to decrease the imminent risk of introducing exotic pathogens, considered A1 pests. However, this requires the use of reliable positive controls, to prevent any false positives and/or negative results, causing undesirable consequences. The aims of this study were to set up a bank of positive controls constituted, in most cases, by the cDNA of the viral capsid gene cloned into commercial plasmid and propose diagnostic primers for PCR and RT-PCR assays. Genomic fragments of 41 quarantine viruses and two quarantine viroids in Brazil, as well as 12 regulated non-quarantine viruses, were cloned in plasmids, to be used as a positive control in diagnostic RT-PCR and PCR tests. Besides being a safer and more economical alternative, this bank will avoid the use of virus-infected tissue or total nucleic acid, which would still be infectious. The correct usage of this kind of positive control would eliminate the risk of incidental introduction of exotic viruses in Brazil.     

氮磷钾配比对巴西陆稻产量及品质的影响

为了提高早稻的产量和品质，用正交旋转组合试验设计，研究了氮、磷、钾肥用量配方对巴西陆稻IAPAR9的生长发育、产量和品质的影响．结果表明：氮肥用量与巴西陆稻的最高苗数、有效穗数、干物质积累呈显著正相关；施磷量与稻谷产量呈显著正相关；施氮、钾量与稻谷产量呈极显著正相关，增施钾肥对提高结实率和增穗、增重有明显的作用；氮肥、磷肥、钾肥用量与巴西陆稻的成穗率均呈较弱的负相关，氮、磷、钾肥用量对稻米外观品质影响不大，不同处理间的空白粒率、整精米率、蛋白质含量的变异幅度较大．巴西陆稻IAPAR9有效穗数、每穗实粒数、结实率、千粒重与产量均有不同程度的正相关，产量性状对产量的效应从大到小依次为有效穗数、结实率、每穗实粒数、千粒重．说明提高巴西陆稻IAPAR9单产的关键在于增加有效穗数，提高结实率．     

Low light availability affects leaf gas exchange,growth and survival of Euterpe edulis seedlings transplanted into the understory of an anthropic tropical rainforest

Euterpe edulis Mart. (Arecaceae) is a threatened palm tree of the Brazilian Atlantic Rainforest understory with fundamental importance for the restoration of degraded forest environments. We assessed the leaf gas exchange, growth and survival of E. edulis seedlings transplanted at three different forest sites (S1, S2 and S3) in the same area in which cocoa trees had been cultivated in a rustic agroforestry system. Measurement was carried out during the first year after seedling transplantation. The sites were characterised according to canopy openness (CO) and total daily photosynthetic photon flux density (PPFD). Average CO and PPFD values were 13.3%, 8.0% and 6.7%, and 3.34, 2.79 and 0.62 mol m^?2 d^?1 for S1, S2 and S3, respectively. A progressive decline in seedling survival was observed in all sites throughout the experiment. At 387 d after planting, survival at S1, S2 and S3 was 57%, 44% and 37%, respectively. The gross light-saturated photosynthetic rate (A_max), leaf area and plant biomass were significantly higher (P < 0.05) in S1 and S2 when compared with S3. The values of dark respiration rate (R _d) and photosynthetic compensation irradiance (I _c) were sufficiently low for a positive carbon balance. Notwithstanding, the interpretation of results of microclimate variables together with leaf gas exchange and growth variables indicated that seedlings at all sites were in a suboptimal condition to achieve A_max, which is probably the main cause of the dramatic decline in the seedlings’ survival throughout the first year after transplantation. From a practical point of view, if the values of CO and PFD are lower than 10% and 3 mol m^?2 d^?1, respectively, it is suggested that the transplanting of E. edulis seedlings to the understory of abandoned agroforestry systems be accompanied by cultural practices, such as the thinning and pruning of tree tops.     

Thresholds in landscape structure for three common deforestation patterns in the Brazilian Amazon

Although abrupt changes (i.e. thresholds) have been precisely defined in simulated landscapes, such changes in the structure of real landscapes are not well understood. We tested for threshold occurrence in three common deforestation patterns in the Brazilian Amazon: small properties regularly distributed along roads (fishbone), irregularly distributed small properties (independent settlements), and large properties. We analyzed differences between real deforestation patterns, and tested the capacity of simulated landscape with different aggregation degrees to predict threshold occurrence. Three 8×8 km sites (replicates) with more than 90% of forest in 1984 and less than 30% in 1998 were selected/simulated for each deforestation pattern. Thresholds were observed for fishbone and large property patterns, especially when considering the connectivity index, although threshold incidences were more frequently observed in simulated landscapes. The capacity of simulated landscapes to predict the exact threshold point in real landscapes was limited, even when considering highly aggregate simulations. However, the general trend in landscape structural changes was similar in real and simulated landscapes. Thresholds occurred at the beginning of the deforestation for mean patch size and at an intermediate stage, corresponding to the percolation threshold, for connectivity, isolation and fragmentation. Threshold behavior for connectivity index might suggest that the survival of strictly forest species will sharply decrease when the proportion of forest reach values <0.60, indicating that conservation efforts should be done to maintain forest cover above this limit. Significant differences observed among the real deforestation patterns, especially in patch isolation and number of fragments, can have significant consequences for conservation. The independent settlement pattern is, without a doubt, the least favorable of them, resulting in a higher level of fragmentation, whereas the large property and fishbone patterns may be less detrimental if connectivity among the remnant forest patches is preserved.     

Sorption and leaching potential of herbicides on Brazilian soils

Sorption of the herbicides alachlor, atrazine, dicamba, hexazinone, imazethapyr, metsulfuron-methyl, nicosulfuron, simazine and sulfometuron-methyl was characterized on six Brazilian soils, using the batch equilibration method. In general, weak acid herbicides (dicamba, imazethapyr, metsulfuron-methyl, nicosulfuron and sulfometuron-methyl) were the least sorbed, whereas weak bases such as triazines and nonionic herbicides (alachlor) were the most sorbed. The Kd values found showed a significant correlation with soil organic carbon content (OC) for all herbicides except imazethapyr and nicosulfuron. Koc values showed a smaller variation among soils than Kd . To estimate the leaching potential, Koc and the ground-water ubiquity score (GUS) were used to calculate half-lives ( t_1/2 ) that would rank these herbicides as leachers or non-leachers. Comparison of calculated values to published values for t_1/2 demonstrated that sulfonylureas and hexazinone are leachers in all soils, alachlor is transitional, and atrazine, simazine and dicamba are leachers or transitional, depending on soil type. Results discussed in this paper provide background to prioritize herbicides or chemical groups that should be evaluated in field conditions with regard to their leaching potential to ground-water in tropical soils.     

Carbon and nitrogen stocks in a Brazilian clayey Oxisol: 13-year effects of integrated crop–livestock management systems

Integrated crop–livestock management systems (ICLS) have been increasingly recommended in Brazilian agroecosystems. However, knowledge of their effect on soil organic carbon (SOC) and total nitrogen (TN) concentrations and stocks is still limited. The study was undertaken to evaluate the effects of ICLS under two tillage and fertilization regimes on SOC and TN concentrations and stocks in the 0–30 cm soil layer, in comparison with continuous crops or pasture. The following soil management systems were studied: continuous pasture; continuous crop; 4 years’ crop followed by 4 years’ pasture and vice-versa. The adjacent native Cerrado area was used as a control. Under the rotation and continuous crop systems there were two levels of soil tillage (conventional and no-tillage) and fertility (maintenance and corrective fertility). The stock calculations were done using the equivalent soil mass approach. The land use systems had a significant effect on the concentrations of SOC and TN in the soil, but no effect was observed for the soil tillage and fertilizer regimes. For these two latter, some significant discrepancies appeared in the distribution of SOC and TN concentrations in the 0–30 cm layer. Carbon storage was 60.87 Mg ha⁻¹ under Cerrado, and ranged from 52.21 Mg ha⁻¹ under the ICLS rotation to 59.89 Mg ha⁻¹ with continuous cropping. The decrease in SOC stocks was approximately 8.5 and 7.5 Mg ha⁻¹, or 14 and 12%, for continuous pasture and ICLS respectively. No-tillage for 10 years after the conversion of conventional tillage to no-tillage under the continuous crop system, and 13 years of conventional tillage in continuous cropping did not result in significant changes in SOC stocks. The SOC and TN stocks in surface layers, using the equivalent soil mass approach rather than the equivalent depth, stress the differences induced by the calculation method. As soil compaction is the principal feature of variability of stocks determinations, the thickness should be avoid in these types of studies.     

Amazonian floodplains harbour minerotrophic and ombrotrophic peatlands

In tropical lowlands, ecosystems with peat strata are commonly reported from Southeast Asia, but hardly at all from Amazonia. In this paper, we quantify the horizontal distribution of four important plant nutrients (Ca, Mg, K and P) in five peatland sites located in Peruvian Amazonia and the vertical distribution of these nutrients in one of the sites. With this data as well as topography measurements of the peat deposit from one of the sites, we showed that minerotrophic and ombrotrophic peatlands can be detected in Amazonian floodplains. The nutrient-poor ombrotrophic bogs receive nutrients only from atmospheric deposition because of their thick peat layer and convex topography, while the minerotrophic swamps are periodically covered by nutrient-rich floodwater and/or receive nutrient input from surface waters or from groundwater with capillary rise. The existence of such peatlands in the Amazonian lowlands increases the regional habitat diversity and availability of palaeoecological information and probably has implications also for the hydrological dynamics, water quality, and carbon dynamics of the area.     

巴西陆稻IAPAR9播种期需水规律分析

将巴西陆稻IAPAR9种子置于不同水分处理的土壤中进行萌发试验.结果表明：随着土壤含水率的降低,IAPAR9的发芽速率、发芽势、发芽率、发芽指数、活力指数和苗体素质均出现不同程度的降低.相对含水率80%处理的各项指标均优于其他处理,故IAPAR9种子萌发的最佳土壤含水率在土壤田间持水率的80%左右.     

Forest-related partnerships in Brazilian Amazonia: There is more to sustainable forest management than reduced impact logging

There is more to sustainable forest management than reduced impact logging. Partnerships between multiple actors are needed in order to create the institutional context for good forest governance and sustainable forest management and stimulate the necessary local community involvement. The idea behind this is that the parties would be able to achieve more jointly than on their own by combining assets, knowledge, skills and political power of actors at different levels of scale. This article aims to demonstrate by example the nature and variety of forest-related partnerships in Brazilian Amazonia. Based on the lessons learned from these cases and the authors’ experience, the principal characteristics of successful partnerships are described, with a focus on political and socioeconomic aspects. These characteristics include fairly negotiated partnership objectives, the active involvement of the public sector as well as impartial brokers, equitable and cost-effective institutional arrangements, sufficient and equitably shared benefits for all the parties involved, addressing socioeconomic drawbacks, and taking measures to maintain sustainable exploitation levels. The authors argue that, in addition to product-oriented partnerships which focus on sustainable forest management, there is also a need for politically oriented partnerships based on civil society coalitions. The watchdog function of these politically oriented partnerships, their awareness-raising campaigns regarding detrimental policies and practices, and advocacy for good forest governance are essential for the creation of the appropriate legal and political framework for sustainable forest management.