Validation of tuber blight (Phytophthora infestans) prediction model

Potato tuber blight caused by Phytophthora infestans accounts for significant losses of tubers in storage. Despite research on infection and management of tuber blight, there is paucity of information on the prediction of the occurrence tuber blight or modelling of tuber infection by P. infestans under field conditions. A tuber blight prediction model was developed in New York in experiments conducted using cultivars Allegany, NY101, and Katahdin in 1998 and 1999. This model was validated using data collected from the potato cultivar Snowden in field experiments in Laingsburg, Michigan from 2000 to 2009. In both New York and Michigan experiments, disease was initiated by artificial inoculation of cultivars with a US-8 isolate of P. infestans. Mean leaf area affected ranged from 0 to 94% at New York, and 0 to 93% at Michigan. At New York and Michigan, mean tuber blight incidences ranged from 1 to 40% and 0 to 15%, respectively. In the validation of the model using data collected at Laingsburg, Michigan, the model correctly predicted tuber blight incidence in 7 out of 9 years. Comparison of observed with predicted values indicated that slopes of the regression line between observed and predicted germination and infection data were not significantly different (P > 0.3547). Correlation coefficient between observed and predicted values was high (r² > 0.65) and the coefficient of variation of the residuals of error was about 12%. Although inoculum availability is assumed in the model, incorporation of relationships of inoculum density, propagule survival in soil, and tuber blight incidence would greatly improve the prediction of tuber blight under field conditions.     

Phenotypic stability of resistance to late blight in potato clones evaluated at eight sites in the United States

Changes in the fungal pathogenPhytophthora infestans in the United States pose a significant threat to potato production. Sources of resistance to these new genotypes of P.infestans need to be identified for potato breeders to have parental materials for crossing, and the phenotypic stability of late blight resistance in these potato clones needs to be determined. Sixteen potato clones which reportedly have some resistance to late blight were evaluated at eight locations: Florida (FL), Maine (ME), Michigan (MI), Minnesota (MN), North Dakota (ND), New York (NY), Pennsylvania (PA) and Wisconsin (WI) in 1996. Percent infected foliage was recorded at approximately weekly intervals following the onset of the disease at each location. Area under the disease progress curve (AUDPC) was calculated. Clones were ranked for mean AUDPC within location and the nonparametric stability statistics, mean absolute rank differences and variance of the ranks, were analyzed for phenotypic stability. Neither of these statistics was significant, indicating a lack of genotype x environment interaction on the rankings of these clones across locations in 1996. The four clones with lowest AUDPC scores were U.S. clones AWN86514-2, B0692-4, B0718-3 and B0767-2. These clones should be useful parental materials for breeders seeking to incorporate genes for late blight resistance into potatoes.     

Effects of Mulch and Potato Hilling on Development of Foliar Blight (<Emphasis Type="Italic">Phytophthora infestans</Emphasis>) and the Control of Tuber Blight Infection

Foliar and tuber blight caused by Phytophthora infestans accounts for significant losses in potatoes in field and storage. Nevertheless, limited research has been published on the effects of cultural practices on late blight control. Field experiments were conducted in two years on Howard gravely loam soil in New York State to evaluate the effectiveness of mulching using oat straw and hilling in preventing tuber blight infection for cvs Allegany and Katahdin. Potato hilling and mulching had little effect on foliar blight development. The cultivar affected the disease development in the foliage, with cv. Allegany showing lower foliar late blight than cv. Katahdin. Tuber blight incidence averaged 25% for cv. Allegany and 3% for cv. Katahdin in hilled plots, while in the mulched plots the incidence of tuber blight averaged 33% for cv. Allegany and 10% for cv. Katahdin. The straw hay mulch was ineffective in tuber blight control. Tubers set at a soil depth of more than 7 cm had lower tuber blight incidence than shallow tubers set at a depth of less than 7 cm. In both years, hilling provided partial protection of tubers but its effectiveness was limited in the presence of favourable conditions for late blight development. Even though large hills had proportionally a lower tuber blight incidence than medium-sized hills, the difference between the different hill sizes was not significant. These studies suggest that the use of cultivars with foliage resistance to late blight in combination with cultural practices may partially reduce the incidence of tuber blight. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation for endorsement by Cornell University or the US Department of Agriculture.     

The effects of dietary HUFA level on flame angelfish (Centropyge loriculus) spawning,egg quality and early larval characteristics

This study was conducted to determine the effects of dietary highly unsaturated fatty acids (HUFA) on flame angelfish (Centropyge loriculus) reproduction, and egg and larval quality. In the experiment, formulated diets containing 1.8, 2.9 or 3.6% n‐3 HUFA were fed to flame angelfish broodstock (n = 4) for 5 months. Mean fecundity (daily egg production), egg fertilization rates and embryo viability were used as indicators of egg quality. In addition, mean egg diameter, oil globule diameter, per cent hatch, larval size at hatch, per cent survival to yolk exhaustion and larval size at yolk exhaustion were recorded for each treatment. Flame angelfish fed the diet containing 3.6% n‐3 HUFA exhibited significantly increased fecundity, fertilization rates and embryo viability than fish that were fed the other two formulated diets. Egg diameter, egg oil globule diameter, larval size at hatch, larval survival to yolk exhaustion and larval size at yolk exhaustion from the 3.6% n‐3 HUFA broodstock treatment group were not significantly different from those derived from the Control broodstock treatment. These data revealed that flame angelfish egg quality could respond rapidly (within weeks) to maternal dietary changes. Results from this study further support that dietary HUFA composition can significantly affect broodstock reproductive performance as well as subsequent performance of eggs and larvae.     

Enhanced detection of infectious salmon anaemia virus using a low‐speed centrifugation technique in three fish cell lines

Infectious salmon anaemia (ISA), caused by ISA virus (ISAV), is a serious disease of farmed Atlantic salmon, Salmo salar L. Recently, molecular‐ and immunofluorescent‐based techniques have become powerful diagnostic tools for ISAV detection, but culture‐based techniques remain the gold standard. A disadvantage of ISAV culture is that the incubation time required before cytopathic effect (CPE) is observed in cell monolayers. To decrease time until CPE is observed, a low‐speed centrifugation technique was applied to existing standard operating procedures for ISAV culture in three fish cell lines. Time until CPE observation was compared in CHSE, SHK and ASK cells, treated or not treated with low‐speed centrifugation after inoculation with ISAV. Low‐speed centrifugation treatment significantly enhanced observable cell infection. Compared to control cells, the length of time until ISAV CPE observation decreased in centrifuged ASK and CHSE cells. Low‐speed centrifugation was also incorporated into a modified clinical shell vial assay. At 48 h post‐inoculation with approximately 20 viral particles, ISAV was detected by an immunofluorescence antibody test in treated ASK and SHK1 cells but not in control cells. Finally, this enhanced viral adsorption assay performed in ASK cells demonstrated higher sensitivity than a real‐time RT‐PCR assay performed on RNA isolated from ISAV‐spiked salmon kidney homogenates.     

Evaluating habitat suitability indices derived from CPUE and fishing effort data for Ommatrephes bratramii in the northwestern Pacific Ocean

Neon flying squid (Ommastrephes bartramii) plays an important role in the pelagic ecosystem and is an international fishery resource with high commercial value in the North Pacific Ocean. The west stock of winter–spring cohort of this species is an important target for the squid-jigging vessels of Japan, Korea and China (including Taiwan). The squid has a life span of less than 12 months, and its population dynamics is heavily influenced by its environment. Thus, a good understanding of its interactions with the habitats, often quantified with a habitat suitability index (HSI) model, is critical in developing a sustainable fishery. In this study, using the Chinese commercial squid-jigger fishery data and corresponding environmental variables we conducted HSI modeling to evaluate the habitat of the west stock of winter–spring cohort of neon flying squid in the northwestern Pacific Ocean. We compared catch per unit effort (CPUE) and fishing effort data in HSI modeling. This study suggests that the CPUE-based HSI model tends to overestimate the ranges of optimal habitats and under-estimate monthly variations in the spatial distribution of optimal habitats. We conclude that a fishing effort-based HSI model performs better in defining optimal habitats for neon flying squid. According to the fishing-effort-based HSI model, the optimal ranges of the following key habitat variables are defined: from 16.6 to 19.6 °C for SST, from 5.8 to 12 °C for temperature at depths of 35 m, from 3.4 to 4.8 °C for temperature at depth of 317 m, from 33.10 to 33.55 psu for SSS and from ?20 cm to ?4 cm for SLH.     

Species differences in total and vertical distribution of branch- and tree-level leaf area for the five primary conifer species in Maine, USA

Vertical distribution of leaf area largely governs both tree structure and function. Models of this important tree attribute have been constructed for several commercially important conifers. However, a limited number of studies have compared alternative modeling techniques and inherent species differences. This study used several existing datasets for the five primary conifer species in Maine, namely balsam fir [Abies balsamea (L.) Mill.], northern white-cedar [Thuja occidentalis (L.)], eastern hemlock [Tsuga canadensis (L.) Carr.], eastern white pine [Pinus strobus (L.)], and red spruce [Picea rubens (Sarg.)] to examine species variation in total and vertical distribution of projected leaf area at the individual branch- and tree-levels. In addition, multiple methods for modeling the vertical distribution of leaf area were examined across the species. For a given branch diameter and location within the crown, eastern hemlock branches held the greatest amount of leaf area, followed by balsam fir, northern white-cedar, white pine, and red spruce. At the tree-level, eastern white pine held the greatest amount of leaf area followed by eastern hemlock, balsam fir, red spruce, and northern white-cedar for a given tree size. Across species, the two-parameter, right-truncated Weibull distribution performed the best for predicting vertical distribution of leaf area when compared to the four-parameter beta and Johnson's S_B distributions (reduction of root mean square error of 1.7–21.1%). Northern white-cedar had a relative distribution of leaf area distinctly different than other species in this study with a mode shifted towards the upper crown. In contrast to red spruce and white pine, the mode of the relative distribution of leaf area for balsam fir and eastern hemlock occurred lower in the crown. Results of this study suggest that differences in total and vertical distribution of leaf area exist between species, but significant amounts of their variation are largely accounted for by bole and crown size.     

Movement patterns of Brook Trout in a restored coastal stream system in southern Massachusetts

Coastal Brook Trout (Salvelinus fontinalis) populations are found from northern Canada to New England. The extent of anadromy generally decreases with latitude, but the ecology and movements of more southern populations are poorly understood. We conducted a 33‐month acoustic telemetry study of Brook Trout in Red Brook, MA, and adjacent Buttermilk Bay (marine system) using 16 fixed acoustic receivers and surgically implanting acoustic transmitters in 84 individuals. Tagged Brook Trout used the stream, estuary (50% of individuals) and bay (10% of individuals). Movements into full sea water were brief when occurring. GAMM models revealed that transitions between habitat areas occurred most often in spring and fall. Environmental data suggest that use of the saline environment is limited by summer temperatures in the bay. Movements may also be related to moon phase. Compared to more northern coastal populations of Brook Trout, the Red Brook population appears to be less anadromous overall, yet the estuarine segment of the system may have considerable ecological importance as a food resource.