Analysis of major photochemical pollutants with meteorological factors for high ozone days in Istanbul, Turkey

Hourly ozone, NO _x and VOC concentrations, measured during 2001–2003 summer periods, are analyzed in order to examine the interaction patterns between the major photochemical pollutants in ?stanbul. 34 high ozone days throughout the summer periods of the three years are determined and examined in the study together with the meteorological parameters like temperature, wind and vertical structure of the atmosphere. The results show that high levels of ozone are observed mostly under anticyclonic conditions with relatively low wind speeds. High ozone days generally experienced maximum concentrations at afternoon hours and minimum concentrations are reached at rush hours due to NO _x – titration by traffic emissions. High negative correlations with NO _x up to -0.84 are observed at the Saraçhane station while higher correlations for VOC species, up to ?0.75, are calculated for Kadiköy station. Some individual episodes experiencing high ozone concentrations up to 310 μg m^?3 in the early morning hours are also studied. It is found that decreasing inversion heights in the early hours of the day led to suppression of pollutants close to surface and thus, an increase in ozone concentrations was observed. Low wind speeds played a major role in the increase of pollution levels in the region. HYSPLIT model is applied to some particular episodes and the results show that the northeasterly transport to the region was dominant, especially in the early-morning maximums.     

Sour Orange (Citrus Aurantium L.) Growth is Strongly Mycorrhizal Dependent in Terms of Phosphorus (P) Nutrition Rather than Zinc (Zn)

The partial sterilization of soil eliminates useful microorganisms, resulting in the reduced growth of mycorrhizae-dependent citrus plants, which are often unresponsive to the application of fertilizer. Research was conducted to test the hypothesis that indigenous mycorrhizae (IM) inoculation is as efficient as selected mycorrhizal inoculation under sterile and non-sterile soil conditions. Rhizophagus clarus and indigenous mycorrhiza spores, isolated from citrus orchards, were used as arbuscular mycorrhizae fungi under greenhouse conditions with sterile and non-sterile Çanakçi series (Typic xerofluvent) soils with low phosphorus (P) fertility. Different P (0 and 100 mg kg^?1) and zinc (Zn) (0, 5 and 10 mg kg^?1) concentrations were used at the start of the experiments. The shoot, root dry weight (RDW), root colonization, and P, Zn, iron (Fe), copper (Cu) and manganese (Mn) concentrations of the shoot were determined; mycorrhizae dependency (MD) was also calculated.

The results indicate that R. clarus and indigenous mycorrhiza in sterile and non-sterile soil conditions considerably increased the growth of citrus plants. Owing to existing beneficial indigenous rhizosphere microorganisms, citrus plant growth without inoculation was better in non-sterile soils than in the sterile soils. In non-sterilized soil, the plant growth parameters of R. clarus-inoculated soils were higher than those of indigenous mycorrhiza-inoculated soils. Mycorrhizae infection increased certain citrus plant growth parameters, such as root infection, biomass and nutrient uptake (P, Zn, Fe, Mn and Cu). In sterile soil, the addition of up to 5 mg kg^?1 soil Zn and the inoculation of R. clarus significantly increased plant growth; inoculation with indigenous mycorrhiza produced more dry weight upon the addition of up to 100 mg kg^?1 phosphorus pentoxide (P₂O₅). Under sterile soil conditions, without considering fertilizer addition, MD was found to be higher than that of non-sterile soils. In general, the contribution of the indigenous soil spores is significant. However, indigenous soil mycorrhizae may need to be managed for better efficiency in increasing plant growth and nutrient uptake. The major finding was that the inoculation of citrus seedlings with mycorrhiza is necessary under both sterilized and non-sterilized soil conditions.     

Morphological and morphometric features of knee joint in wild boar (Sus scrofa)

In the study, it was aimed to reveal the structure of the knee joint anatomically and morphometrically in the wild pig known as the ancestor of the domestic pig. In the study, the left and right knee joints of mature 10 wild boars were used as material. For this purpose, the materials were fixed with 10% formaldehyde solution. Macroanatomical and morphometrical examinations of bones, menisci and ligaments involved in joint formation were performed after fixation. Trochlea and condyles of femur were examined, and various measurements were made. Trochlear labia were found to be the same size, and the condyles did not show a significant difference in size. The shape of lateral condyle of the tibia was trapezoid, and the shape of medial condyle was triangular. Moreover, the lateral intercondylar tubercule was higher according to the medial one. The presence of a shallow groove on the tibial tuberosity was detected. It was found that the width difference between apex and base was more pronounced on the anterior and lateral surface of the patella. Joint surface of the fibula was found to be flat in all materials. The menisci were ‘C’ shape, but the medial meniscus is more convex than the lateral one. It was observed that the outer edges were thick, while the inner edges were thin. Ligaments of the knee joint were well developed. When the findings of the study were compared with the literature, domestication seemed to have no significant effect in terms of the morphologic properties of the knee joint of wild boar.     

Evaluating and Modeling of the Seedling Growth Ability of Wheat Seeds as Affected by Shallow-Saline Groundwater Conditions

The adverse effects of shallow-saline groundwater may vary among crucial growth stages of crops by decreasing crop growth and productivity. The present study aimed to assess the germination and seedling growth ability of wheat seeds grown in four different (0.38, 2.0, 4.0, and 8.0 dSm^?1) groundwater salinities (GWS) and three (30, 55, and 80?cm) groundwater depths (GWD) condition. To achieve this aim, wheat crops were grown in drainable lysimeters under rain shelter conditions until the maturity stage, and then wheat seeds were harvested from various saline groundwater conditions. Afterward, wheat seeds were germinated to identify the performance of germination and seedling growth attributes. Response surface methodology (RSM) was used to determine the optimal growing wheat seeds condition, which had high early seedling growth performance. The results showed that the seedling growth performance of wheat seeds increased with increasing GWDs, while decreased with increasing GWSs. Based on the RSM findings, we suggest that GWD and GWS should be at least 42?cm and at most 5.46 dSm^?1, respectively, for sustainable higher wheat yield and seed quality. Finally, this study could provide considerable information for selecting strong and healthy wheat seeds grown under shallow saline groundwater conditions.

     

Isolation of DNA from embryo and chorio-allantoic membranes and sexing by PCR in Japanese quail

1. The aim of this study was to evaluate the amount and quality of genomic DNA isolated from embryos and their chorioallantoic membranes (CAM) and to investigate the utility of different PCR methods for identifying the sex of Japanese quail embryos.

2. Fertilised eggs were incubated at 37°C for 120?h and DNA was isolated from samples of embryos and CAM. Target regions of the CHD-W gene or XhoI repeat sequence were amplified by PCR and examined on agarose gels or by using a capillary electrophoresis system.

3. DNA samples from embryos had significantly higher OD260 values than those from CAM, while OD260/280 values were not significantly different between embryos and CAM.

4. Gender identification was not possible by PCR amplification of the CHD gene region or XhoI repeat sequences examined on agarose gels, whereas males and females of Japanese quail were distinguishable when PCR products of the CHD gene were separated by capillary electrophoresis.

5. The results showed that high molecular weight DNA could be isolated from both embryo and CAM of Japanese quail. DNA isolated from CAM could be used for molecular genetic studies where embryos would be used for other purposes, such as in situ hybridisation. A capillary electrophoresis system could be used for identifying the gender of Japanese quail embryos.     

Effects of the Progesterone Receptor Antagonist Aglepristone on Implantation Administered on Days 6 and 7 after Mating in Rabbits

There is no safe and accurate method for early termination of pregnancy in the rabbit. So this study was carried out to determine the effect of aglepristone administration in preventing early pregnancy before implantation in this species. Twenty‐two animals (10–12 months old, New Zealand White rabbits) were naturally mated and pregnancies were confirmed in all animals by ultrasonographic examinations on day 6 after mating (5–7.5 MHz linear array transducer Dynamic Imaging Sonostar, UK) and the animals were grouped randomly: Group I & Group III: Aglepristone (Alizin^®, Virbac; 10 mg/kg, subcutaneously) was injected twice, 24 h apart, on days 6 and 7 after mating (n = 5; n = 8). Group II & Group IV: The same volume of 0.9% NaCl solution was subcutaneously injected in the same interval and served as controls (n = 5; n = 3). Ultrasonographical examination of the uterus was performed daily from day 7 to day 11 post‐mating to test aglepristone efficiency. Blood samples were collected between days 6 and 30, centrifuged at 3070 g for 10 min and stored at ?20°C. The does in aglepristone groups (Group I, III) were not pregnant whereas all animals in control groups were pregnant (Group II, IV). The does in group I & III were examined only clinically and ultrasonographically; however, does in groups III and IV were laparomized on days 6, 7, 9 and 11 post‐mating to control countable implantation sites. No implantation sites were present in group III whereas they were seen obviously in group IV. Side effects were not observed. The mean serum progesterone (P4) concentrations were not significantly different between control and treated does (p > 0.05). The results indicate that aglepristone treatment on days 6 and 7 after mating could prevent pregnancy after unwanted matings without any side effects in the rabbit. Aglepristone treatments are possibly not affecting further fertilities before implantation.     

Efficacy of mating disruption technique against carob moth,Apomyelois ceratoniae Zeller (Lepidoptera: Pyralidae) in pomegranate orchards in Southeast Turkey (Şanlıurfa)

Carob moth, Apomyelois (=Ectomyelois) ceratoniae Zeller (Lepidoptera: Pyralidae) is a key pest in pomegranate orchards in Southeast of Turkey. The pest causes significant damage and reduces marketability of fruits, and is difficult to control with insecticides. Therefore, it is imperative to develop environmentally sound effective alternative management approaches. In this study, we aimed to evaluate the mating disruption technique and determine the appropriate application dose for the management of the pest. The study was carried out in Central and Suruç districts of ?anl?urfa province (Turkey) in 2011 and 2012. SPLAT EC (Specialized Pheromone-Lure Application Technology) trade named dispenser containing 2% Z7, E9-11-dodecatrienyl formate pheromone mimic was applied at 500, 625 and 750 g/ha in three pomegranate orchards in each district. Results indicated that mating disruption technique significantly reduced the pest populations. But effectiveness of the method was less in terms of the damage rate on fruits. Pheromone applied at 500 g/ha was not effective. However, application at 625 g/ha reduced the pest populations to an acceptable level. Thus, the concentration could be considered an appropriate dose for the less abundant pest population within integrated pest management while higher population would require combining the mating disruption method with a bio-insecticide.     

Involvement of Phytophthora cryptogea in sweet cherry decline in Turkey

Sweet cherry is a major commercial crop in Turkey, the most important producer of the fruit worldwide. Sweet cherry decline was observed in an orchard in Ankara province of Turkey. Affected young trees exhibited reduced tree vigor, yellowing and wilting of leaves, and dieback symptoms resulted in tree death. A Phytophthora sp. was consistently isolated from necroses that appeared on taproots and crowns. The pathogen was identified as Phytophthora cryptogea based on several morphological features and DNA sequence of the internal transcribed spacer (ITS) region. P. cryptogea was pathogenic on excised shoots and 1-year-old cherry rootstocks. This is the first report of P. cryptogea causing disease of sweet cherry in Turkey.     

Early‐stage screening for heat tolerance in cotton

The study aimed to identify early‐stage traits of cotton for heat tolerance using multitrait approach reflecting field yield performance. Seedling growth and physiological response of 16 cultivars to high temperature were investigated at three different developmental stages and four heat stress conditions in a climate chamber. Some traits such as hypocotyl dry weight, leaf pigment contents and cellular respiration were significantly correlated with previously known yield of ten cultivars grown in the hot field conditions. Sixteen cotton cultivars were classified for their heat tolerance by principle component analysis (PCA) using yield‐correlated physiological traits. As a result, we showed that heat tolerance classification of cultivars based on PCA significantly coincided with the yield results of cultivars grown in hot field. As a conclusion, yield‐correlated physiological traits determined in the study may facilitate selection of heat‐tolerant cotton genotypes at early stage. In addition, yield‐correlated early‐stage traits can be used in phenotyping for QTL and association mapping studies to develop selection markers for heat tolerance.     

Genetic mapping and inheritance of Russian wheat aphid resistance gene in accession IG 100695

The Russian wheat aphid (RWA), Diuraphis noxia (Kurdjumov), is an important pest of small‐grain cereals, particularly wheat, worldwide. The most efficient strategy against the RWA is to identify sources of resistance and to introduce them into susceptible wheat genotypes. This study was conducted to determine the mode of inheritance of the RWA resistance found in ICARDA accession IG 100695, to identify wheat microsatellite markers closely linked to the gene and to map the chromosomal location of the gene. Simple sequence repeat (SSR) marker scores were identified in a mapping population of 190 F₂ individuals and compared, while phenotypic screening for resistance was performed in F_2 : 3 families derived from a cross between ‘Basribey’ (susceptible) and IG 100695 (resistant). Phenotypic segregation of leaf chlorosis and rolling displayed the effect of a single dominant gene, temporarily denoted Dn100695, in IG 100695. Dn100695 was mapped on the short arm of chromosome 7D with four linked SSR markers, Xgwm44, Xcfd14, Xcfd46 and Xbarc126. Dn100695 and linked SSR markers may be useful for improving resistance for RWA in wheat breeding.