Promoter anchored amplified polymorphism based on random amplified polymorphic DNA (PAAP-RAPD) in cotton

Non-coding sequences account for a majority of the higher plant genome, some of which have important effects in gene regulation and plant development. In an effort to develop molecular marker systems to search for polymorphisms associated with high fiber yield and quality in cotton, we have developed a methodology that could specifically target the regulatory regions of the cotton genome. In this study we designed 10-nucleotide degenerate promoter primers based on conserved core promoter sequences and tested their applicability in PCR amplifications in combination with 10-mer random amplified polymorphic DNA (RAPD) primers. The amplified markers are called promoter anchored amplified polymorphism based on RAPD (PAAP-RAPD). Forty cotton genotypes with diverse genetic and geographical backgrounds were used to test the PAAP-RAPD system using polyacrylamide gel electrophoresis. Based on PAAP-RAPD markers amplified from 12 primer combinations, the 40 genotypes were classified into five distinctive groups: two Upland cotton (Gossypium hirsutum) groups from China, another two Upland cotton groups from the USA, and one group from American Pima cotton (G. barbadense). The groupings are in general consistent with their genetic and geographical origins. Thirty-six PAAP-RAPD and RAPD fragments were cloned and four of them were further subjected to sequence analysis. Signal scanning using software PLACE confirmed that they contained an array of cis-regulatory sequences in addition to the core promoter sequences. The results demonstrate the potential application of PAAP-RAPD as a new marker system specifically targeting regulatory regions of the plant genome.     

Should spring wheat breeding for organically managed systems be conducted on organically managed land?

Organic spring wheat (Triticum aestivum L.) producers in the northern Great Plains use cultivars which have been bred for conventional management systems or heritage cultivars released before the widespread use of synthetic fertilizers and pesticides. To investigate the feasibility of organic wheat breeding and to determine common genetic parameters for each system, we used a random population of 79 F₆-derived recombinant inbred sister lines from a cross between the Canadian hard red spring wheat cultivar AC Barrie and the CIMMYT derived cultivar Attila. The population, including the parents, was grown on conventionally and organically managed land for 3 years. Heritability estimates differed between systems for 6 of the 14 traits measured, including spikes m⁻², plant height, test weight, 1,000 kernel weight, grain protein, and days to anthesis. Direct selection in each management system (10% selection intensity) resulted in 50% or fewer lines selected in common for nine traits, including grain yield, grain protein, spikes m⁻², and grain fill duration. The results of this study suggest that indirect selection (in conventionally managed trials) of spring wheat destined for organically managed production would not result in the advance of the best possible lines in a breeding program. This implies that breeding spring wheat specific to organic agriculture should be conducted on organically managed land.     

Variation in morphophysiological characters of fruits of <Emphasis Type="Italic">Trigonobalanus doichangensis</Emphasis> (Fagaceae) according to individual trees,populations and years

Trigonobalanus doichangensis is recognized as a rare and endangered plant of China. The morphological and physiological traits of fruits were investigated in one population over 2 years (2006–2007) and in four populations during 2007 in order to facilitate ex-situ conservation and eventual reforestation through planting of propagules. The results indicated that morphological traits including fruit length, fruit width and 1,000-fruit weight showed significant variation among individual trees within populations (P < 0.01), however, not among populations. And each of them had significant positive correlation with each other (P < 0.01). Seed abortion occurred, and there was significant variation in percentage of fruit fill among populations and among individual trees within populations, whereas, percentage of fruit fill showed no correlation with the morphological traits. As for fruit germination, germination percentage, germination index and vigor index presented significant variation among populations and among individual trees within populations. The three germination-related indices had significant positive correlations with each other (r ≥ 0.9, P < 0.01) and with percentage of fruit fill (r > 0.86, P < 0.01), however, possessing weak correlations with morphological traits. It was also found that each of the traits mentioned above showed significant variation among individual trees within years, however, not between years. In addition, more than 48% of the variation occurred among individual trees both within populations and within years in all the fruit characters. We suggest that collecting fruits from various individuals at each of populations will be the preferred strategy to conserve the most genetic diversity of the species.     

Patterns of change in body condition in wintering Neotropical-Nearctic migratory birds in shaded plantations in the Andes

Despite the widely accepted idea that shaded plantations are valuable habitats for Neotropical migrants in disturbed landscapes, little empirical evidence is available in relation to the quality of this habitat for Neotropical-Nearctic migratory birds in the Andes. We evaluated the suitability of shaded plantations for overwintering Neotropical-Nearctic migratory birds by examining diurnal and seasonal variation in body condition of migrants in these agroforests in the Andes. During October to April 2008–2009 and 2009–2010, we mist-netted eight species of Neotropical-Nearctic migrants in shaded plantations in the Colombian Andes. Body condition improved throughout the day for Cerulean Warbler (Setophaga cerulea), Blackburnian Warbler (Setophaga fusca), Tennessee Warbler (Leiothlypis peregrina), and especially Canada Warbler (Cardellina canadensis). Similarly, body condition improved across the season for Tennessee Warbler, Rose-breasted Grosbeak (Pheucticus ludovicianus), and Summer Tanager (Piranga rubra). Our results provided additional evidence that several common Neotropical migrants, including species of conservation concern such as Cerulean Warbler and Canada Warbler, may improve their body condition in shaded plantations. However, about half of the species assessed in this study did not show any significant improvement in their body condition (e.g. Red-eyed Vireo). Furthermore, on average, species were in poor condition (i.e. body condition scores were negative) in these coffee farms. Thus, the extent to which this agricultural system represents high quality habitat should be looked with caution. Overall, our data contribute novel information on daily patterns of body condition improvement for several common migratory birds in Andean shaded plantations.     

Non-thermal Plasma as an Innovative Option for the Abatement of Volatile Organic Compounds: a Review

Volatile organic compounds (VOCs) cause global and local impacts, resulting in environmental, health, and economic adverse effects. Industrial and waste management activities are the main anthropogenic stationary sources of VOCs in the atmosphere. The traditional technologies for the treatment of VOC-contaminated air present several limitations when treating effluents with low VOC concentrations, high airflow rate, and with compounds with low solubility in water. However, a novel technology, based on non-thermal plasmas (NTPs) and catalysis, has shown promising results in air purification. In this framework, after an initial overview on NTP-catalysis principles, this review presents and discusses 20 recent papers, with a threefold purpose: evaluating the most recent applications of NTP and NTP-catalysis reactors to the treatment of air-VOC mixtures, analyzing all the parameters that may influence the abatement efficiency and the by-product formation, and providing the reader with insights into the choice of the preferable configurations to use, based on the effluent type and the destination of the treated air. As a result of this review, NTPs may represent a promising option for indoor air treatment, especially because of the lower expected byproduct formation when treating low-concentrated VOC mixtures with relatively low air flow rates. If the target is the abatement of higher VOC concentrations, the higher energy efficiency obtainable in such conditions makes NTP-catalysis a cost-effective option for industrial applications. In addition, the formation of simpler and more soluble by-products makes NTPs a suitable technology for air pretreatment upstream of water-based removal technologies, such as absorption columns and biofilters.     

Investigation on acoustic behavior and air permeability of struto nonwovens

This work deals with the study of acoustic performance of struto nonwovens and their relation to fabric air permeability. In order to achieve the objective of the research, sound absorption coefficient of struto nonwovens was determined via impedance tube method, the average value of sound absorption coefficient (α?) was calculated. Air permeability of struto nonwovens was examined by using FX3300 Textech Air Permeability Tester. Results showed that struto nonwoven exhibited good absorption ability at frequency bands 3000-6400 Hz while it was ineffective for frequency lower than 3000 Hz. Struto nonwovens with high GSM and fabric thickness showed better acoustic performance and lower air permeability. It was observed that α? was inversely proportional to air permeability, with correlation coefficient 0.95. It was concluded that air permeability can be used as a criterion of sound absorption behavior of struto nonwovens. A lower air permeability suggests a better sound absorption performance for struto nonwoven fabrics.