Assessment of genetic diversity and population structure of Vietnamese indigenous cattle populations by microsatellites

Cattle play a very important role in agriculture and food security in Vietnam. A high level of cattle diversity exists and serves different needs of Vietnamese cattle keepers but has not yet been molecularly characterized. This study evaluates the genetic diversity and structure of Vietnamese indigenous cattle populations, using microsatellite markers. A total of 410 individuals from six indigenous cattle populations and an exotic breed was characterized using 27 microsatellite markers A total of 362 alleles was detected and the number of alleles per locus ranged from 8 (INRA005 and ILSTS005) to 17 (ETH185). The level of gene diversity was high indicated by a mean expected heterozygosity (He) across populations and loci of 0.73. Level of inbreeding (mean F_IS=0.05) and genetic differentiation (mean F_ST=0.04) was moderate. The phylogenetic tree based on Reynolds genetic distance reflected geographic distances. Structure analysis indicated five homogeneous clusters. The Brahman, Lang Son, Ha Giang and U Dau Riu cattle were assigned to independent clusters while Nghe An, Thanh Hoa and Phu Yen cattle were grouped in a single cluster. We conclude that Vietnamese indigenous cattle have high levels of genetic diversity and distinct genetic structures. Based on these results, we recommend that for conservation homogenous populations (Nghe An, Thanh Hoa and Phu Yen) can be grouped to reduce costs and U Dau Riu, Lang Son and Ha Giang populations should be conserved separately to avoid loss of genetic diversity.     

Prevalence and risk factors associated with Cryptosporidium oocysts shedding in pigs in Central Vietnam

We investigated the prevalence and risk factors associated with Cryptosporidium oocysts shedding in pigs in Central Vietnam. A total of 740 single fecal samples collected from diarrheic and non-diarrheic pigs on 89 farms were screened by the modified Ziehl-Neelsen staining method. Prevalence at the animal and the farm levels were 18.1% (134/740) and 71.9% (64/89), respectively. Risk factors for the infection were identified using univariate and multivariate logistic regression analysis. The results revealed that age, sanitary condition and topography were significantly associated with oocyst shedding (P<0.05). Pre-weaned piglets were at the highest risk for infection, followed by post-weaners, sows and finishing pigs. Good sanitary conditions showed positive effects in decreasing oocysts shedding. Topographically, Cryptosporidium was more common in mountainous zone than that in coastal delta zone. There was an association between the occurrence of diarrhea and the level of Cryptosporidium oocyst excretion within infected pigs. This is the first epidemiological investigation of prevalence and risk factors of Cryptosporidium in pigs in Vietnam.     

Applying Activated Carbon Derived from Coconut Shell Loaded by Silver Nanoparticles to Remove Methylene Blue in Aqueous Solution

This study developed a new adsorbent, specifically activated carbon-loaded silver nanoparticles (AgNPs-AC) by coating the silver nanoparticles (AgNPs) onto activated carbon (AC). The obtained AgNPs-AC were characterized by scanning electron microscopy (SEM), energy-dispersive spectrometry (EDS), Fourier transform infrared spectroscopy (FTIR), and Brunauer-Emmett-Teller (BET). The ability of AgNPs-AC to remove methylene blue (MB) was evaluated using different experimental factors, these being pH solution, contact time, adsorbent dose, and initial MB concentration. Results indicated that the highest adsorption capacity of MB onto AgNPs-AC was obtained when the AC was loaded onto AgNPs at the impregnation ratio of 0.5% w/w for AC and AgNPs. The best conditions in which AgNPs-AC could remove MB were as follows: pH 10, contact time lasting 120 min, and adsorbent dose being 250 mg/25 mL solution. In this scenario, the maximum adsorption capacity of MB onto AgNPs-AC was 172.22 mg/g. The adsorption isothermal equilibrium was well described by the Langmuir, Freundlich and Sips models. The Sips equations had the highest correlation coefficient value (R²?=?0.935). The pseudo-first-order and pseudo-second-order kinetic models agree well with the dynamic behavior of the adsorption of dye MB on AgNPs-AC.     

Spatial prediction of saline and sodic soils in rice‒shrimp farming land by using integrated artificial neural network/regression model and kriging

In the context of widespread saline and sodic soil, mapping and monitoring spatial distribution of soil salinity and sodicity are important for utilization and management in agriculture lands. In this study, two-stage assessment was proposed to predict spatial distribution of saline and sodic soils. First, artificial neural network (ANN) and multiple linear regressions (MLR) model were used to predict sodium adsorption ratio (SAR) and exchangeable sodium percentage (ESP) based on soil electrical conductivity (EC) and pH. Then, the Kriging interpolation method combined with overlay mapping technique was used to perform saline spatial predictions in the study area. The model accuracy level is evaluated based on coefficient of determination (R²) and root mean square error (RMSE). In the first stage, the values of R² and RMSE of SAR and ESP were 0.94, 0.17 and 0.94, 0.24 for ANN, and 0.35, 0.52 and 0.34, 0.76 for MLR, respectively. Similarly, in the second stage, the RMSE of ANN-Kriging were much closer to 0 and relatively lower than MLR-Kriging and Kriging. The results show that ANN-Kriging can be used to improve the accuracy of mapping and monitoring spatial distribution of saline and sodic soil in areas that develop the rice-shrimp cultivation model.     

The interactive effects of biochar and cow manure on rice growth and selected properties of salt-affected soil

Salt-affected soil induces detrimental influences on paddy rice (Oryza sativa L.) growth and ameliorating the influences could be done with organic amendments, such as animal manure and biochar. The aims of the current study are: (1) to examine the interactive effects of biochar and cow manure on rice growth and on selected properties of salt-affected soil, and (2) to identify potential mechanisms related to the amendments. Saline-sodic soil was used for a net house experiment with two experimental factors: biochar (no-biochar, rice-husk, and -straw biochar) and cow manure (with and without cow manure). Without the manure, addition of both rice-hush and – straw biochar significantly increased rice growth, whereas a combination of individual biochar with manure did not show a positive synergistic effect. The interactive effect of two factors was not significant on available P and exchangeable K concentrations, but the main effects of the two factors were significant. Biochar addition resulted in higher soil cation exchange capacity (CEC) (28.8 to 29.0 cmol_c kg^?1) than the control (25.6 cmol_c kg^?1), but manure addition did not. Improved nutrient availabilities such as P and K, as well as CEC are among the potential mechanisms accounting for the enhanced rice growth with biochar.     

Marker-Assisted Selection of Xa21 Conferring Resistance to Bacterial Leaf Blight in indica Rice Cultivar LT2

Bacterial leaf blight of rice (BLB), caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive diseases in Asian rice fields. A high-quality rice variety, LT2, was used as the recipient parent. IRBB21, which carries the Xa21 gene, was used as the donor parent. The resistance gene Xa21 was introduced into LT2 by marker-assisted backcrossing. Three Xoo races were used to inoculate the improved lines following the clipping method. Eleven BC₃F₃ lines carrying Xa21 were obtained based on molecular markers and agronomic performance. The 11 lines were then inoculated with the three Xoo races. All the 11 improved lines showed better resistance to BLB than the recipient parent LT2. Based on the level of resistance to BLB and their agronomic performance, five lines (BC₃F₃ 5.1.5.1, BC₃F₃ 5.1.5.12, BC₃F₃ 8.5.6.44, BC₃F₃ 9.5.4.1 and BC₃F₃ 9.5.4.23) were selected as the most promising for commercial release. These improved lines could contribute to rice production in terms of food security.     

Better management practices and their outcomes in shrimp farming: evidence from small-scale shrimp farmers in Southern Vietnam

Despite the growth of aquaculture exports from developing countries to developed countries in recent years, a high percentage of these products are rejected at developed countries’ ports because of non-compliance with international standards. This paper presents a case study of the shrimp aquaculture sector in Vietnam to examine the factors behind the persistence of such port rejections. In particular, we focus on why the so-called better management practices (BMPs) are not appropriately adopted by many farmers and examine whether the number and types of information sources matter in farmers’ decisions on BMP adoption and whether BMP adoption actually leads to better performances. On the basis of our estimation using primary data collected in Southern Vietnam, we find that information sources and training experiences indeed matter in the adoption of a higher number of BMPs and that BMP adoption indeed reduces the possibility of disease outbreaks. These results prove the effectiveness of BMPs and suggest the importance of disseminating knowledge regarding them to farmers through experts.     

The neglected and underutilized species in the Northern mountainous provinces of Vietnam

Neglected and underutilized species (NUS) play a pivotal role in the improvement of nutrition, medicine, and income for rural populations in the Northern mountainous provinces of Vietnam. PRA and baseline tools were used to collect the ethnobotany information of the NUS and their practical uses through the traditional knowledge of a local culture and people in the three Northern mountainous provinces of Vietnam. The results showed noticeable values of seventy-seven NUS including 50 leafy vegetables, 9 root and tuber crops, 11 edible wild fruits, 3 legumes and 4 others (some species have defined as NUS, others have not yet defined as NUS). These findings would create a strong promotion for utilizing and conserving of genetic resources of NUS in the Northern mountainous regions of Vietnam.     

Glucose cross-linking of polyurethane copolymer and its impact on the elevation of mechanical properties and shape memory effect

Effect of glucose cross-linking on the shape memory and mechanical properties of polyurethane (PU) block copolymer was investigated. Glucose was selected due to its large number of free hydroxyl groups, easy availability, miscibility with other reactants, and cyclic structure. The glycerol cross-linking did not affect the molecular interaction and phase separation of hard and soft segments in polyurethane structure as judged from IR and DSC analysis. Viscosity of glucose cross-linked PU increased after cross-linking due to the cross-linked structure. Maximum stress drastically improved with the adoption of glucose as a cross-linker together with a slight increase in strain at break. Shape recovery also increased with the adoption of glucose as a cross-linker, and shape recovery was not diminished after four cyclic shape recovery tests. In contrast, shape retention significantly decreased if glucose was included for two different hard segment contents. Finally, glucose cross-linking was compared with other cross-linkers used in shape memory polymer and the advantage of glucose cross-linking was discussed.     

Characteristics of two duck farming systems in the Mekong Delta of Viet Nam: stationary flocks and moving flocks, and their potential relevance to the spread of highly pathogenic avian influenza

Ducks are considered to play a major role in the spread of highly pathogenic avian influenza (HPAI) H5N1 in Viet Nam, but detailed information on their management is limited. We distinguished two different systems (1) stationary duck flocks that are not commonly driven to rice fields beyond village boundaries and that are confined overnight on farms and (2) moving duck flocks that are intentionally driven to rice fields beyond village boundaries, that are not returning to home farms for extended periods and that are housed overnight in temporary enclosures in rice paddies. A total of 115 stationary and 22 moving flock farmers were interviewed in 2007 in the Mekong Delta of Viet Nam. Moving duck flocks are larger than stationary flocks, which is indicative of their more commercial production. Moving flock farmers apparently are more aware of HPAI risks than stationary flock farmers, as their flocks are more likely fully vaccinated and have less contact with chickens during scavenging. On the other hand, the spread of HPAI virus between birds might be promoted by moving duck flocks as they repeatedly use transport vehicles and numerous rice paddies for scavenging and are often visited by hatchery owners in the field for purchasing duck eggs. In addition, long distances travelled by moving duck flocks might also result in widespread dissemination of HPAI virus. Further studies are necessary to describe HPAI prevalence and travel patterns of moving duck flocks and to explore the moving duck flock network in detail.