From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.)

The exceptional biodiversity of Madagascar is threatened by anthropogenic landscape changes that took place during the 2000 years of human colonization. This study focuses on the influence of geographic distance and forest fragmentation on genetic diversity and population differentiation of three rare, nocturnal, arboreal lemur species in northwestern Madagascar. Historic declines in population sizes as a consequence of forest fragmentation are quantified and dated. Eighteen sites were visited, and a total of 205 Microcebus ravelobensis, 45 M. bongolavensis and 78 M. danfossi were genotyped with eight microsatellite loci. Genetic differentiation among the sites, as measured by F_ST, ranged from 0.01 to 0.19. These values were significant in almost all cases and indicated genetic structure in the samples. Isolation-by-distance was detected in one species and a STRUCTURE analysis indicated that fragmentation further promoted genetic differentiation. Bayesian methods revealed that populations from all three species underwent a major demographic collapse of around two orders of magnitude. This decrease probably began after the arrival of humans, most likely within the last 500 years. This result suggests that anthropogenic changes may have been limited during the first 1500 years of human colonization in all three ranges. Two of the study species (M. danfossi, M. bongolavensis) lack effectively protected areas in their ranges. Consequently, quick conservation actions are now needed in order to secure the remaining genetic diversity of these species.     

Sensitivity of mitochondrial respiration to different inhibitors in Venturia inaequalis

The sensitivity of Venturia inaequalis field isolates to inhibitors of the cytochrome bc1 complex at the Qo site (QoIs) was characterised at the molecular, biochemical and physiological level, and compared to other respiration inhibitors. Comparison of a sensitive and a QoI-resistant isolate revealed very high resistance factors both in mycelium growth and spore germination assays. Cross-resistance was observed among QoIs such as trifloxystrobin, azoxystrobin, famoxadone, strobilurin B and myxothiazol. In the mycelium growth assay, antimycin A, an inhibitor of the cytochrome bc1 complex at the Qi site, was less active against the QoI-resistant than against the sensitive isolate. The mixture of QoIs with salicylhydroxamic acid (SHAM), an inhibitor of the alternative oxidase, exerted synergistic effects in the spore germination but not in the mycelium growth assay. Thus, the cytochrome and the alternative respiration pathways are assumed to play different roles, depending on the developmental stage of the fungus. Induction of alternative oxidase (AOX) by trifloxystrobin was observed in mycelium cells at the molecular level for the sensitive but not the resistant isolate. Following QoI treatment, respiration parameters such as oxygen consumption, ATP level, membrane potential and succinate dehydrogenase activity were only slightly reduced in Qo-resistant mycelium cells, and remained at much higher levels than in sensitive cells. In contrast, no difference was observed between sensitive and resistant isolates when NADH consumption was measured. Comparison of the cytochrome b (cyt b) gene of the sensitive and resistant isolates did not reveal any point mutations as is known to occur in resistant isolates of other plant pathogens. It is assumed that QoI resistance in V inaequalis may be based on a compensation of the energy deficiency following QoI application upstream of the NADH dehydrogenase of the respiratory chain.     

Termite control with microencapsulated permethrin

Bait methods with microencapsulated active ingredients are proposed for controlling local populations of subterranean termites. The foraging workers will take up the microcapsules, transport them to the nest and pass them to their nestmates. In laboratory tests microencapsulated formulations of permethrin had lethal effects on Heterotermes indicola Wasman and Reticulitermes flavipes (Kollar) depending on the amount of active ingredient applied. The time interval between the application of the capsules and the occurrence of insecticidal effects could be modified by changing the wall thickness of the capsules. Tests revealed that the microcapsules were transmitted from donors to recipients by trophallaxis. Microencapsulated formulations from which the solvent used during the manufacturing process had been removed did not reveal any repellent effects in several tests.     

Detection of <Emphasis Type="Italic">Phytophthora nicotianae</Emphasis> and <Emphasis Type="Italic">P. palmivora</Emphasis> in citrus roots using PCR-RFLP in comparison with other methods

Phytophthora nicotianae and P. palmivora are the most important soil-borne pathogens of citrus in Florida. These two species were detected and identified in singly and doubly infected plants using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) of internal transcribed spacer (ITS) regions of ribosomal DNA. The sensitivity of the PCR-RFLP was analyzed and the usefulness of the method evaluated as an alternative or supplement to serological methods and recovery on semi-selective medium. In a semi-nested PCR with universal primers ITS4 and ITS6, the detection limit was 1 fg of fungal DNA, which made it 1000× more sensitive than a single-step PCR with primers ITS4 and DC6. The sensitivity of detection for P. nicotianae was shown to be ten-fold lower than for P. palmivora, limiting its detection with restriction profiles in plants infected by both fungal species. Phytophthora nicotianae was detected with species-specific primers in all samples inoculated with this species despite the absence of species-specific patterns in RFLP. In contrast, the incidence of detection of P. palmivora in the presence of P. nicotianae was considerably lower using plating and morphological detection methods. Due to its high sensitivity, PCR amplification of ribosomal ITS regions is a valuable tool for detecting and identifying Phytophthora spp. in citrus roots, provided a thorough knowledge of reaction conditions for the target species is established prior to the interpretation of data.     

Financial optimisation of target diameter harvest of European beech (Fagus sylvatica) considering the risk of decrease of timber quality due to red heartwood

A mature, average stand of European beech was generated based on characteristic data of trial plots. Some 27 different strategies of target diameter harvest, were simulated for up to 80 years with the help of a distance-dependent single-tree growth simulator. The treatments were differing in the size of the target diameter, the beginning and the end of the harvest. Based on a statistical model, the probability of the occurrence of more than 30% of red heartwood at the front-side diameter was calculated for three sections of each log. Using the predicted probability, the decrease of timber quality due to red heartwood for different treatment strategies was assessed. The harvested volume and the predicted timber quality for different harvesting strategies were used to calculate the net revenue achieved in each simulation period with the help of a calculation program. The net present value for variable interest rates of the different harvesting strategies was calculated, assuming free land rent. Using a linear programming approach, optimal areas for different treatment strategies of a modelled forest of 100 ha were calculated under 4 different scenarios. The results of the optimisation showed how the increasing interest rates replaced higher target diameters out of the optimal solution. In contrast to that the treatments with higher target diameter became more important with increasing restrictions concerning budget or ecological constraints.     

Effects of bareroot nursery practices on tree seedling root development: an evolution of cultural practices at J. Herbert Stone nursery

Bareroot nursery practices that maximize root development and growth have been studied and documented over a number of years. Each nursery, however, has its own unique combination of climate, soils, species, and stocktypes for which site specific cultural practices are necessary. J. Herbert Stone Nursery, a USDA Forest Service nursery, located in Central Point, OR, has completed a variety of production trials to adapt general cultural practices to its site. These trials resulted in changes which include: developing a strategy to maintain a high soil porosity through the application of organic matter and tillage measures; sowing seed earlier in the winter for 1 + 0 stocktypes; lowering seedbed densities from 267 seedlings/m² (25 seedlings/ft²) to between 161 and 195 seedlings/m² (15 and 18 seedlings/ft²); transplanting seedlings in early fall instead of spring; and developing a miniplug + 1 stocktype.     

Assessment of Atmospheric Heavy Metals by Moss Monitoring with Isothecium Stoloniferum Brid. in the Fraser Valley, B.C., Canada

The atmospheric heavy metal pollution of the Fraser Valley, B.C., Canada was assessed in 1993 by analyzing 62 samples of the common woodland moss Isothecium stoloniferum for lead, cadmium, nickel, zinc, chromium, and manganese. The latter two metals did not show a distinct regional distribution, but lead, cadmium, nickel, and zinc showed distinct pattern along a west-east gradient. High values were found in the metropolitan Vancouver area, located in the west of the study region. Significantly lower values were recorded for mosses from the eastern more rural areas of the Fraser Valley. Metal pollutants are likely to be contained close to their emission sources by alternating south-east, north-west winds. Highest values overall were found in the North Shore Mountains, adjacent to Vancouver. This was related to higher precipitation and short range pollutant transport from the industrialized, heavily populated areas in the floodplain of the Fraser River.     

Nutrient dynamics in an Andean forest region: a case study of exotic and native species plantations in southern Ecuador

New Forests - Information about nutrient dynamics is of upmost importance in order to contribute to the restoration of degraded forest environments in the Andes of southern Ecuador. This study aims...     

Ecotoxicological testing of sediments and dredged material: an overlooked opportunity?

Purpose

Basing decisions for the management of contaminated sediments on ecotoxicological data is still often met with skepticism by European stakeholders. These concerns are discussed as they pertain to bioassays to show how ecotoxicological data may provide added value for the sustainable management of sediment in aquatic systems.

Materials and methods

Five “concerns” are selected that are often raised by stakeholders. The ecotoxicological practice is discussed in light of the knowledge gained in recent decades and compared with chemical sediment analysis and chemical data.

Results and discussion

Common assumptions such as a higher uncertainty of biotest results for sediments compared to chemical analyses are not supported by interlaboratory comparisons. Some confusion also arises, because the meaning of biotest data is often misunderstood, questioning their significance in light of a limited number of organisms and altered test conditions in the lab. Because biotest results describe a sediment property, they should not be directly equated with an impact upon the biological community. To identify a hazard, however, the possibility of false-negative results due to the presence of contaminants that are not analyzed but are toxic is lower.

Conclusions

The cost of increased investment in ecotoxicological tests is, in our view, small compared with that of making false-negative assessments of sediment/dredged material that can ultimately have long-term environmental costs. As such, we conclude that ecotoxicological testing is an opportunity for sediment management decision-making that warrants more attention and confidence in Europe.

     

Organic‐carbon and nitrogen stocks and organic‐carbon fractions in soil under mixed pine and oak forest stands of different ages in NE Germany

The objective of this work was to evaluate the C and N stocks and organic‐C fractions in soil under mixed forest stands of Scots pine (Pinus sylvestris L.) and Sessile oak (Quercus petraea [Matt.] Liebl.) of different ages in NE Germany. Treatments consisted of pure pine (age 102 y), and pine (age 90–102 y) mixed with 10‐, 35‐, 106‐, and 124‐y‐old oak trees. After sampling O layers, soils in the mineral layer were taken at two different depths (0–10 and 10–20 cm). Oak admixture did not affect total organic‐C (TOC) and N stocks considering the different layers separately. However, when the sum of TOC stocks in the organic and mineral layers was considered, TOC stocks decreased with increasing in oak age (r² = 0.58, p < 0.10). The microbial C (C_MB) was not directly correlated with increase of oak age, however, it was positively related with presence of oak species. There was an increase in the percentage of the C_MB‐to‐TOC ratio with increase of oak‐tree ages. On average, light‐fraction C (C_LF) comprised 68% of the soil TOC in upper layer corresponding to the highest C pool in the upper layer. C_LF and heavy‐fraction C (C_HF) were not directly affected by the admixture of oak trees in both layers. The C_HF accounted on average for 30% and 59% of the TOC at 0–10 and 10–20 cm depths, respectively. Despite low clay contents in the studied soils, the differences in the DCB‐extractable Fe and Al affected the concentrations of the C_HF and TOC in the 10–20 cm layers (p < 0.05). Admixture of oak in pine stands contributed to reduce topsoil C stocks, probably due to higher soil organic matter turnover promoted by higher quality of oak litter.