Genetic variability of the Japanese eel Anguilla japonica (Temminck & Schlegel) related to latitude

Abstract— Isozyme genotypes of 400 glass eels recruiting to 4 localities along the east Asian coast, stretching from Taiwan to the Yalu River of northeastern China, were studied using starch gel electrophoresis. Geographic cline was found to exist in two loci: NADP-isocitrate dehygenase-1 and 6-phosphogluconate dehydrogenase. Frequencies of the most common allele of these two loci increased from south to north. In the latitudinal range of 25°N to 40°N, the magnitude of difference of IDH100 and PGD100 was 13% and 9% respectively. However, deviations from Hardy-Weinberg equilibrium were found to be insignificant in both loci at three of the four localities. The cline was, therefore, unlikely to have resulted from selection. Migration time-lag from different parts of the continent to the spawning ground in the western Pacific was suggested to be a possible reason for the formation of the cline.     

Detection of avian-like rotavirus A VP4 from a calf in Japan

A total of 568 normal feces from calves on a beef farm in Fukui Prefecture, Japan, in 2011–2012 were examined by RT-semi-nested PCR for rotavirus A (RVA) VP4 genes. Through partial sequencing and BLAST analyses of 84 VP4-positive specimens, we identified an avian-like RVA strain, N2342, which shares highest nucleotide identity (80.0%) with known avian-like bovine strain 993/83, in one specimen. Phylogenetic analysis also revealed a close genetic relationship between N2342 and avian RVAs, suggesting bird-to-cattle transmission. We observed frequent contact of wild birds with calves in the farm, suggesting that these birds were the source of the virus.     

Evaluation of genetic structure of Korean wild soybean (Glycine soja) based on saponin allele polymorphism

Korean wild soybeans (Glycine soja) hypocotyl exhibit seven common saponin allele combinations: Sg-1 ^a /sg-4/sg-6 (phenotype: Aa), Sg-1 ^b /sg-4/sg-6 (Ab), Sg-1 ^a /Sg-4/sg-6 (AaBc), Sg-1 ^b /Sg-4/sg-6 (AbBc), Sg-1 ^a /sg-4/Sg-6 (Aa + α), Sg-1 ^a /Sg-4/Sg-6 (AaBc + α) and Sg-1 ^b /Sg-4/Sg-6 (AbBc + α). Diversity of saponin allele frequency (H_af) and saponin allele combination frequency (H_acf) was evaluated by Shannon–Weaver Index that was ranged from 0.75 to 1.04 and 0.28 to 1.25, respectively. High values of H_af and H_acf were found in Jeollanam-do and its adjoining regions Jeollabuk-do and Gyeongsangnam-do. The genetic index of Korean wild soybean increased towards south from north and west from east regions. The frequency of Sg-1 ^b and Sg-6 allele combinations increased towards south region (Jeollanam-do). These results suggest that Jeollanam-do region is the primary center of diversity, Jeollabuk-do and Gyeongsangnam-do regions are the secondary center of diversity and the remaining regions (Gyeonggi-do, Gangwon-do, Chungcheongbuk-do, Chungcheongnam-do, Jeollabuk-do, Gyeongsangbuk-do and Jeju-do) are the tertiary center of diversity for soyasaponin polymorphism in Korea. Furthermore, saponin allele frequency distribution suggested that alleles Sg-1 ^b and Sg-6 dispersed from Jeollanam-do to other regions of Korea. Our findings have laid the foundation for uncovering genetic diversity in Korean wild soybeans that could be exploited in soybean breeding programs.     

Secomycalolide A: A New Proteasome Inhibitor Isolated from a Marine Sponge of the Genus Mycale

A new oxazole-containing proteasome inhibitor, secomycalolide A, together with known mycalolide A and 30-hydroxymycalolide A, was isolated from a marine sponge of the genus Mycale. They showed proteasome inhibitory activities with IC₅₀ values of 11–45 μg/mL.     

H2 15O translocation in rice was enhanced by 10 μm 5-aminolevulinic acid as monitored by positron emitting tracer imaging system (PETIS)

5-Aminolevulinic acid (ALA) acts to increase chlorophyll biosynthesis, photosynthesis, cold stress tolerance, and salt tolerance at low concentrations. We studied the effects of ALA on H₂ ¹⁵O translocation from the roots to the shoots of rice plants (Oryza sativa L. cv. Nipponbare) in real time by a positron-emitting tracer imaging system (PETIS). When the plant was treated with 10 μm ALA, the velocity of the H₂ ¹⁵O translocation from 2 to 12 min after absorption increased to 126, 137, 140% that of the control at 1.5, 2.5, and 3.5 h after ALA treatment, respectively. However, ALA did not affect the H₂ ¹⁵O translocation within 0.5 h of treatment. When the plant was treated with 0.1 mM ABA at 4 h after 10 μm ALA treatment, the velocity of the H₂ ¹⁵O translocation decreased at 0.5 h after ABA treatment. Those observations suggested ALA might be absorbed and transported to the guard cells within 1.5 h and functioned to expand the stomatal aperture.     

Saponin polymorphism in the Korean wild soybean (Glycine soja Sieb. and Zucc.)

Seed saponin composition of 3025 wild soybean (Glycine soja Sieb. and Zucc.) accessions collected from nine regions of Korea was analysed by thin‐layer chromatography to determine its polymorphic variation and geographical distribution and find mutants in saponin components. The saponin composition of seed hypocotyls was primarily divided into seven phenotypes, designated as Aa, Ab, AaBc, AbBc, Aa+α, AaBc+α and AbBc+α. The predominant phenotypes were AaBc (55%), Aa (33%), AaBc+α (7.5%) and Aa+α (3.3%). The frequencies of Ab, AbBc and AbBc+α were very low (0.3‐0.5%). Codominant alleles Sg‐1^a and Sg‐1^b and dominant allele Sg‐4 occupied 98.6, 1.1 and 63.3%, respectively. Alleles Sg‐3 and Sg‐5 were found to be dominant in all the analysed accessions except the mutants. Three accessions were discovered as mutants via LC‐PDA/MS/MS. The accession CWS0115 did not produce saponin Aa and Ax, CWS2133 did not produce saponin Aa and Ab and CWS5095 did not produce any group A saponins. These newly determined mutants might be utilized in producing a new soybean variety with good taste as well as in biosynthetic studies.     

Kunitz trypsin inhibitor polymorphism in the Korean wild soybean (Glycine soja Sieb. & Zucc.)

Kunitz trypsin inhibitor (KTi) in 1368 accessions of wild soybean (Glycine soja Sieb. & Zucc.), collected from three regions of Korea, was examined for allelic diversity and geographical distribution. Five electrophoretically distinguishable KTi forms were detected: three were common (Tia, Tib and Tia/Tib) and two were previously unreported (Tib^i7‐1 and Tibⁱ⁵). The Tia allele was predominant (93.49%). Alleles Tib, Tib^i7‐1 and Tibⁱ⁵ were detected with the frequencies of 3.47, 0.55 and 0.11%, respectively. The heterozygous form (Tia/Tib) was detected with the frequency of 2.26%. The nucleotide sequence of Tib^i7‐1 was identical to that of the Tib‐derived variant allele Tif, with the exception of three nucleotides: A→G at position +244, A→C at position +286 and G→C at position +601. The latter two were similar to Tia, suggesting that Tib^i7‐1 is an intermediate allele between Tia and Tib. The gene for Tibⁱ⁵ showed 100% similarity with the Japanese intermediate allele Tibⁱ⁵. This study demonstrates that Korean wild soybeans are remarkably rich source of new KTi alleles not reported before.