Identification of quantitative trait loci associated with shoot sodium accumulation under low potassium conditions in rice plants

Sodium (Na) application has marked beneficial effects on plant growth when the potassium (K) supply is low. Under low K supply, three japonica rice (Oryza sativa L.) cultivars, Koshihikari, Nipponbare, and Sasanishiki, accumulated more Na than three indica cultivars, IR36, IR64, and Kasalath, and the effect of Na application on growth was greater in japonica Koshihikari plants than in indica IR64 plants. A quantitative trait locus (QTL) analysis using a population of backcross inbred lines derived from japonica Koshihikari and indica Kasalath identified two significant loci associated with shoot Na concentration on chromosomes 3 and 6. The quantitative trait locus for shoot Na accumulation on chromosome 6 was confirmed in a population of chromosome segment substitution lines. The major QTL detected in this study could be useful for increasing crop productivity under low K input.     

Iron-deficiency response and expression of genes related to iron homeostasis in poplars

Iron (Fe) deficiency is a serious agricultural problem, especially in calcareous soils, which are distributed worldwide. Poplar trees are an important biomass plant, and overcoming Fe deficiency in poplars will increase biomass productivity worldwide. The poplar Fe-deficiency response and the genes involved in poplar Fe homeostasis remain largely unknown. To identify these genes and processes, we cultivated poplar plants under Fe-deficient conditions, both in calcareous soil and hydroponically, and analyzed their growth rates, leaf Soil and Plant Analyzer Development (SPAD) values, and metal concentrations. The data clearly showed that poplars have notable growth defects in both calcareous soil and a Fe-deficient hydroponic culture. They exhibited serious chlorosis of young leaves after 3 weeks of Fe-deficient hydroponic culture. The Fe concentrations in old leaves with high SPAD values were markedly lower in Fe-deficient poplars, suggesting that poplars may have good translocation capability from old to new leaves. The Zn concentration in new leaves increased in Fe-deficient poplars. The pH of the hydroponic solution decreased in the Fe-deficient culture compared to the Fe-sufficient culture. This finding shows that poplars may be able to adjust the pH of a culture solution to better take up Fe. We also analyzed the expression of Fe homeostasis-related genes in the roots and leaves of Fe-sufficient and Fe-deficient poplars. Our results demonstrate that PtIRT1, PtNAS2, PtFRO2, PtFRO5, and PtFIT were induced in Fe-deficient roots. PtYSL2 and PtNAS4 were induced in Fe-deficient leaves. PtYSL3 was induced in both Fe-deficient leaves and roots. These genes may be involved in the Fe uptake and/or translocation mechanisms in poplars under Fe-deficient conditions. Our results will increase a better understanding of the Fe-deficiency response of poplars and hence improve the breeding of Fe-deficiency-tolerant poplars for improved biomass production, the greening of high pH soils, and combatting global warming.     

New analogs of pochonicine,a potent β-N-acetylglucosaminidase inhibitor from fungus Pochonia suchlasporia var. suchlasporia TAMA 87

Three novel analogs of pochonicine (1) were isolated from a solid fermentation culture of the fungal strain Pochonia suchlasporia var. suchlasporia TAMA 87, and their structures were elucidated as 7-deoxypochonicine (2), 6-deoxypochonicine (3), and 6,7-dideoxypochonicine (4). These analogs were found to possess the same stereochemistry as pochonicine. Comparison of β-N-acetylglucosaminidase (GlcNAcase) inhibitory activity between these analogs and pochonicine suggested that the C-6 hydroxy group of pochonicine was essential to its potent GlcNAcase inhibitory activity and that the C-7 hydroxy group also contributed to the activity, but to a lesser extent than the C-6 hydroxy group.     

Comparison of Salmonella enterica serovar Abortusequi isolates of equine origin by pulsed-field gel electrophoresis and fluorescent amplified-fragment length polymorphism fingerprinting

Equine paratyphoid is caused by Salmonella enterica serovar Abortusequi, and manifests mainly as abortion in the mare. We compared S. Abortusequi strains isolated in Japan and other countries using pulsed-field gel electrophoresis (PFGE) and fluorescent amplified-fragment length polymorphism (FAFLP) analysis. PFGE analysis of S. Abortusequi strains gave 21-27 fragments ranging in size from 33 to 602kb. Although two PFGE profiles were observed among the 20 S. Abortusequi isolates in Japan, the restriction fragments originating from the chromosome were common between the two profiles. The similarity index of the two profiles was 90.9%, while those between Japanese and five other S. Abortusequi strains were 29.8-37.5%. On the other hand, FAFLP analysis of S. Abortusequi strains generated 64-67 amplified fragments ranging in size from 100 to 400bp. One polymorphic fragment was observed among the 20 S. Abortusequi isolates in Japan. These data indicate the close relation of this agent in Japan. S. Abortusequi strains sharing a common ancestry might have been conserved in Japan.     

A geostatistical approach to spatial density distributions of sika deer (Cervus nippon)

Sika deer (Cervus nippon) cause serious damage to trees in Japanese forests. Browsing, bark stripping, and tree abrasion with antlers account for 50% of total wildlife damage over the past decade. The extent of forest damage depends on deer population density. We determined the spatial distribution of sika deer population density on Mt. Hiko (Fukuoka Prefecture, southwestern Japan). We also investigated changes in population density distribution over time. Determinants of population density were examined, with particular emphasis on the hunting cull. Deer densities in 1999 and 2004 were estimated by fecal pellet counts at 86 sites. We used kriging, a geostatistical technique that is a component of geographic information systems, to interpolate site-specific point data over large areas of landscape. Mapping procedures showed that high-density (≥30.0 deer km^?2) and low-density sections of landscape (≤10.0 deer km^?2) decreased in areal extent between 1999 and 2004. Contractions of high-density sections were attributable to intensive hunting. In low-density landscape sections, reduced hunting pressure allowed increased persistence of adult animals whose high fecundity led to population growth and higher deer densities. Landscape tracts with medium deer densities (10.0–30.0 deer km^?2) expanded, adding further difficulties to the task of wildlife management. Given the scale of the problems caused by deer, it is clear that reliable estimates of population size across space and time are essential components of the wildlife manager’s toolbox.     

Novel method for improving the antioxidative properties of fish meat by direct injection of sodium l-ascorbate into the blood vessels of live fish

The color of the red muscle of pelagic fish is used as an indicator of freshness, and sustaining a bright red color is important for maintaining the commercial value of pelagic fish. Feeding fish with antioxidant compounds can delay metmyoglobin (metMb) formation, but the process requires long-term feeding. Live cultured Japanese horse mackerel Trachurus japonicus were used in this study. After anesthetization, 2 ml of blood was drawn from blood vessels, and a parenteral solution including an antioxidant compound was injected. Browning, metMb formation, and lipid oxidation of dark muscle during chilled storage were delayed by injecting sodium l-ascorbate as an antioxidant compound in the blood vessels of live fish.     

Isolation and identification of boron-accumulating bacteria from contaminated soils and active sludge

High levels of boron are toxic to living organisms. The removal of boron from contaminated water is an important way of dealing with this environmental problem. For this purpose, we screened for bacteria that can absorb high levels of toxic boron from the environment. A range of boron-accumulating bacteria was isolated from boron-contaminated soil in Turkey, from uncontaminated soil in Tokyo, Japan, and from active sludge in Tokyo by semi-quantifying the boron accumulation of each single-cultured bacterium. Intracellular boron concentrations ranged from 0.3 to 1.36 nmol g⁻¹ dry weight. Nineteen isolates identified by 16S rRNA gene sequence analysis were most closely related to the genera Bacillus , Variovorax , Pseudomonas , Shewanella , Mycobacterium and Rhodococcus . To our knowledge, this is the first study examining a wide range of bacterial strains in terms of boron accumulation.     

Genetic population structure of the Pacific bluefin tuna Thunnus orientalis and the yellowfin tuna Thunnus albacares in the North Pacific Ocean

The genetic population structure of the Pacific bluefin tuna (PBF) Thunnus orientalis and the yellowfin tuna (YFT) T. albacares in the North Pacific Ocean was investigated. The polymorphism of microsatellite (SSR) loci and sequences of mitochondrial DNA control region (mtCR) were analyzed for 71 samples of PBF from Japan and Mexico and 45 samples of YFT from Japan and Panama. In the SSR analyses, both single-locus (?0.010 to 0.008 in PBF and ?0.023 to 0.020 in YFT) and global multilocus (0.003 in PBF and ?0.002 in YFT) F _ST values among the geographic populations were low and not significant in these species. In the mtCR analyses, neither the neighbor-joining tree nor the minimum spanning network showed genetic differentiation among the geographic populations in each species. The pairwise F _ST values among the geographic populations of them (?0.005 in PBF and ?0.020 to ?0.014 in YFT) were low and not significant. Our SSR and mtCR data suggested that genetic differentiations were not evident among the eastern and western populations in the North Pacific Ocean either in PBF or in YFT. Mismatch distributions, demographic parameters, and neutrality tests suggested that sudden population expansion of PBF and YFT in the North Pacific Ocean occurred 628,000–731,000 and 450,000–525,000 years ago, respectively.     

Brown root rot of Russell prairie gentian caused by Subplenodomus drobnjacensis

Brown root rot of Russell prairie gentian was observed in the Aomori Prefecture, Japan in April 2011. The fungal isolate from the diseased root was identified as Subplenodomus drobnjacensis on the basis of its morphological characteristics and nucleotide sequences. The isolate induced similar root rot symptoms when inoculated in healthy Russell prairie gentian plants. We proposed the name “brown root rot” for this disease.     

Acidulocompost,a food waste compost with thermophilic lactic acid fermentation: its effects on potato production and weed growth

Acidulocomposting recycles food wastes by means of thermophilic lactic acid fermentation. This process can decrease ammonia volatilization and odor emission during processing and produce compost with high nitrogen (N) content. To compare the yield of potatoes (Solanum tuberosum L. ‘Dansyakuimo’) and the suppression of weeds with acidulocompost (AC) and those with conventional composts and inorganic fertilizer (IF), we conducted field experiments in Miyagi Prefecture, northeastern Japan. Potatoes were cultivated in 2008 and 2009 in an Andosol field treated with AC, conventional food waste compost (FWC), poultry manure compost (PMC), cattle manure compost (CMC), IF, or no fertilizer (NF). AC, but not the other treatments, delayed the emergence of potatoes, and suppressed the emergence of weeds, but it did not inhibit potato growth during the late growth stage or yield. Potato N uptake and tuber yield with AC were significantly higher than those with NF and similar to those with FWC, PMC, and IF. The N uptake efficiencies (ratio of difference between N uptake in the treatment and the control to added N) for AC (10.4–12.7% in 2008 and 2009) were similar to those for FWC and PMC (10.2–13.1%), higher than those for CMC (–1.3 to 6.3%), but significantly lower than those for IF (30.2–42.3%). Our findings indicate that AC has an N supply capacity similar to those of FWC and PMC and additionally suppresses the emergence and growth of weeds.