Factors associated with development of Canine Infectious Respiratory Disease Complex (CIRDC) in dogs in 5 Canadian small animal clinics

This study investigated the association between presence of respiratory pathogens and development of Canine Infectious Respiratory Disease Complex (CIRDC) in dogs in 5 Canadian small animal clinics. In total, 86 dogs were tested using a commercial PCR respiratory panel; 64 dogs were considered as cases and 22 were control dogs matched by veterinary clinic. No control animals (0/22) were positive for canine parainfluenza virus (CPIV), whereas 27/64 (42%) CIRDC cases were positive. Furthermore, 81% of case dogs tested positive for Mycoplasma cynos, compared with 73% of control dogs. Canine respiratory corona virus (CRCoV) was detected in no control dogs compared with 9.4% of clinical dogs. No animals were positive for any influenza virus type A present in the diagnostic panel. Presence of CPIV was associated (P < 0.01) with the occurrence of CIRDC after adjustment for demographic factors and presence of CRCoV (P = 0.09).     

Bio-economic evaluation of farmers’ perceptions of viable farms in western Kenya

Arable land in western Kenya is under considerable pressure from increasing human population. Rural households depend on farming for at least part of their livelihood, and poverty rates are among the highest in Kenya. Land is often depleted of nutrients, and for most farmers, access to inputs and markets is poor. There is a need to identify options that are manageable within the context of the farmer’s resource base and the household’s objectives that could improve farm household well-being. In this study we integrated qualitative informal participatory approaches with quantitative mathematical programming and biophysical simulation modelling. Households in four sub-locations in Vihiga District were clustered and pilot cases identified. Meetings were held with farmers to elicit their perceptions of what their ideal farm would look like, and how its performance might compare with their own farm’s performance. With farmers’ help, a range of scenarios was analysed, relating to changes in current enterprise mixes, changes in current farm sizes, and changes in prices of staples foods and cash crops. A considerable mismatch was found between farmers’ estimates of their own farm’s performance, and what was actually produced. There seems to be a threshold in farm size of 0.4 ha, below which it is very difficult for households to satisfy their income and food security objectives. Even for larger farms whose households are largely dependent on agriculture, the importance of a cash crop in the system is critical. There is a crucial role for extension services in making farmers aware of the potential impacts on farm revenue of modest changes in their farm management systems. We are monitoring nine households in the district, whose farmers have made some changes to their system in an attempt to increase household income and enhance food security.     

Effects of continuous spectrum LEDs used in indoor cultivation of two coniferous species Pinus sylvestris L. and Abies borisii-regis Mattf

The effects of four different continuous spectrum LED light qualities on the growth characteristics of Pinus sylvestris L. (PS) and Abies borisii-regis Mattf. (AB) seedlings were studied. The seedlings were exposed for 35 days inside growth chambers to G2 (high in red and far-red), AP67 (high in blue and far-red), AP67-ARCH (high in green), and NS2 (high in blue including a small percentage in the UV area) LEDs, as well as fluorescent light (FL) as Control. Each species showed a unique light-adapted response. G2 treatment stimulated needle formation of PS seedlings, while AB seedlings were unaffected. Hypocotyl elongation was promoted by FL; however, LEDs resulted in compact plants with greater root development, especially under the AP67-ARCH and AP67 spectra for PS and AB, respectively. In PS, AP67-ARCH and G2 significantly increased dry weight, while AB was affected significantly by AP67 and NS2. Furthermore, root growth potential of both species was better after LED pre-cultivation than the FL. Therefore, the use of continuous spectrum LEDs can enhance desirable quality characteristics of seedlings, which may be advantageous in large scale seedling production for reforestation.     

Overland water and salt flows in a set of rice paddies

Cultivation of paddy rice in semiarid areas of the world faces problems related to water scarcity. This paper aims at characterizing water use in a set of paddies located in the central Ebro basin of Spain using experimentation and computer simulation. A commercial field with six interconnected paddies, with a total area of 5.31 ha, was instrumented to measure discharge and water quality at the inflow and at the runoff outlet. The soil was classified as a Typic Calcixerept, and was characterized by a mild salinity (2.5 dS m⁻¹) and an infiltration rate of 5.8 mm day⁻¹. The evolution of flow depth at all paddies was recorded. Data from the 2002 rice-growing season was elaborated using a mass balance approach to estimate the infiltration rate and the evolution of discharge between paddies. Seasonal crop evapotranspiration, estimated with the surface renewal method, was 731 mm (5.1 mm day⁻¹), very similar to that of other summer cereals grown in the area, like corn. The irrigation input was 1874 mm, deep percolation was 830 mm and surface runoff was 372 mm. Irrigation efficiency was estimated as 41%. The quality of surface runoff water was slightly degraded due to evapoconcentration and to the contact with the soil. During the period 2001–2003, the electrical conductivity of surface runoff water was 54% higher than that of irrigation water. However, the runoff water was suitable for irrigation. A mechanistic mass balance model of inter-paddy water flow permitted to conclude that improvements in irrigation efficiency cannot be easily obtained in the experimental conditions. Since deep percolation losses more than double surface runoff losses, a reduction in irrigation discharge would not have much room for efficiency improvement. Simulations also showed that rice irrigation performance was not negatively affected by the fluctuating inflow hydrograph. These hydrographs are typical of turnouts located at the tail end of tertiary irrigation ditches. In fact, these are the sites where rice has been historically cultivated in the study area, since local soils are often saline-sodic and can only grow paddy rice taking advantage of the low salinity of the irrigation water. The low infiltration rate characteristic of these saline-sodic soils (an experimental value of 3.2 mm day⁻¹ was obtained) combined with a reduced irrigation discharge resulted in a simulated irrigation efficiency of 60%. Paddy rice irrigation efficiency can attain reasonable values in the local saline-sodic soils, where the infiltration rate is clearly smaller than the average daily rice evapotranspiration.     

A physical map of the 1-gigabase bread wheat chromosome 3B

As the staple food for 35% of the world's population, wheat is one of the most important crop species. To date, sequence-based tools to accelerate wheat improvement are lacking. As part of the international effort to sequence the 17-billion-base-pair hexaploid bread wheat genome (2n = 6x = 42 chromosomes), we constructed a bacterial artificial chromosome (BAC)-based integrated physical map of the largest chromosome, 3B, that alone is 995 megabases. A chromosome-specific BAC library was used to assemble 82% of the chromosome into 1036 contigs that were anchored with 1443 molecular markers, providing a major resource for genetic and genomic studies. This physical map establishes a template for the remaining wheat chromosomes and demonstrates the feasibility of constructing physical maps in large, complex, polyploid genomes with a chromosome-based approach.     

Biodegradability of Disinfectants in Surface Waters from Buenos Aires: Isolation of an Indigenous Strain Able to Degrade and Detoxify Benzalkonium Chloride

Biodegradability of chlorhexidine (CH), triclosan (TC), and benzalkonium chloride (CBA) has been tested in 18 surface water sampling points in the urban area of Buenos Aires. Sampling points were located in both the Reconquista and the Matanza-Riachuelo basins as well as in the La Plata River. High tolerance to the three disinfectants was found and indigenous strains capable of degrading CBA and TC were isolated. Neither tolerance nor biodegradation were correlated with sewage pollution. A strain that degrades CBA was identified as belonging to the genus Pseudomonas using the API20NE system and 16SRNA sequencing. In batch assays, the strain was capable of degrading 100, 200, and up to 500 mg L^?1 of CBA in 10, 25, and 46 h respectively with specific growth rates (μ) of 0.56, 0.30, and 0.14 h^?1. The efficiency of the process was between 99.5–98.0% in terms of compound removal and between 93.8–89.1% in terms of chemical oxygen demand (COD). The detoxification of the compound as a result of the biodegradation was assessed using Pseudokirchneriella subcapitata, Vibrio fischeri, and Lactuca sativa as test organisms.     

Carbon in heartwood,sapwood and bark along the stem profile in three Mediterranean <Emphasis Type="Italic">Pinus</Emphasis> species

• Context   

Understanding biological processes in forests is necessary to orientate ecosystem management towards potential C sequestration. To achieve this, information is required about changes in forest biomass C pools, including the stem components (bark, sapwood and heartwood).     

Species distribution models applied to plant species selection in forest restoration: are model predictions comparable to expert opinion?

An expert on local flora usually is the best option for plant species selection in most ecological restoration projects; although species selection often needs to be dealt with swiftly as well as on a limited budget, and obtaining the opinion of a local expert may not always be an economically viable alternative. In such cases, species distribution models (SDM) may offer a faster and more cost effective alternative. We asked six experts to rank native tree species according to their suitability at 24 forest sites. The predictive performance of the suitability rankings was evaluated by assessing their ability to discriminate present from absent species in the observed tree assemblages at each evaluation site. We used the area under the receiver operating characteristic curve to calculate the probability that the estimated suitability for a species present at a particular evaluation site is greater than the estimate for an absent species (both picked at random). Suitability rankings were also obtained from the predictions of SDM and the same procedure was used to estimate the predictive performance of the set of models at each site. The experts offered concordant suitability rankings at almost every evaluation site. There were no significant differences in the predictive performance of the SDM and four of the experts, although the SDM performed slightly better than the other two experts. Our results point to the suitability of the proposed species distribution modeling approach to obtain fast and cost effective recommendations for species selection in forest restoration projects.     

Fluoroquinolone-resistant Campylobacter in animal reservoirs: dynamics of development, resistance mechanisms and ecological fitness

Thermophilic Campylobacter species, including Campylobacter jejuni and Campylobacter coli, are responsible for foodborne campylobacteriosis in humans and are increasingly resistant to fluoroquinolone (FQ) antimicrobials. The therapeutic use of FQ antimicrobial agents in food animal production, particularly in poultry, has become a concern for public health, because the practice may promote the emergence of FQ-resistant Campylobacter that can be transmitted to humans through the food chain. Recent studies have indicated that Campylobacter displays a hypermutable phenotype in response to in vivo treatment with FQ antimicrobials, resulting in the rapid emergence of resistant mutants. Distinct from other Gram-negative bacteria, the acquisition of FQ resistance in Campylobacter does not require stepwise accumulation of gyrA mutations and overexpression of efflux pumps, and is mainly mediated by single-step point mutations in gyrA in the presence of a constitutively expressed multidrug efflux pump, CmeABC. The simplicity of the resistance mechanisms may facilitate the rapid adaptation of Campylobacter to FQ treatment. The FQ-resistant Campylobacter mutants derived from chickens do not show a fitness cost in vivo and are ecologically competitive in the colonization of chickens even in the absence of antimicrobial selection pressure. These findings suggest that FQ-resistant Campylobacter may continue to persist regardless of antimicrobial usage, and highlight the need for extra effort to prevent the occurrence and spread of FQ-resistant Campylobacter in animal reservoirs.