Afterimage of perceptually filled-in surface

An afterimage induced by prior adaptation to a visual stimulus is believed to be due to bleaching of photochemical pigments or neural adaptation in the retina. We report a type of afterimage that appears to require cortical adaptation. Fixating a neon-color spreading configuration led not only to negative afterimages corresponding to the inducers (local afterimages), but also to one corresponding to the perceptually filled-in surface during adaptation (global afterimage). These afterimages were mutually exclusive, undergoing monocular rivalry. The strength of the global afterimage correlated to a greater extent with perceptual filling-in during adaptation than with the strength of the local afterimages. Thus, global afterimages are not merely by-products of local afterimages, but involve adaptation at a cortical representation of surface.     

Potential of anaerobic digestate of dairy manure in suppressing soil‐borne plant disease

Frequent use of pesticides to control soil‐borne plant disease leads to environmental pollution and the development of pesticide resistance in phytopathogens. Soil amendment is considered to have the potential of suppressing plant disease because of its biological properties. However, information on anaerobic digestate is limited. In this study, potential of antagonistic activities of anaerobic digestate against phytopathogens were investigated by detecting the amounts of antagonistic bacteria (Bacillus and Pseudomonas) in anaerobic digestates of dairy manure. The results showed that anaerobic digestion increased the total amounts of Bacillus and Pseudomonas in digestate. Bacillus suppressed growth of phytopathogens, while Pseudomonas did not show any antagonistic activities. These results indicated that Bacillus was an effective antagonistic bacterium in digestate against phytopathogens. Furthermore, two selected isolates, B11 (Bacillus subtilis) and B59 (Bacillus licheniformis), were applied in field experiments and showed significant reduction in percent infection of potato late blight (Phytophthora infestans). These results demonstrate the benefits of digestate in suppressing soil‐borne plant diseases caused by antagonistic bacteria.     

A proteomic analysis of Nipponia nippon (ID#162)

We investigated the proteome of a female Crested Ibis (Nipponia nippon, ID#162) that died on March 10, 2010 at the Sado Japanese Crested Ibis Conservation Center. Protein preparations from the brain, trachea, liver, heart, lung, proventriculus, muscular stomach, small intestine, duodenum, ovary and neck muscle were subjected to in‐solution shotgun mass spectrometry (MS)/MS analyses using an LTQ Orbitrap XL mass spectrometer. A search of the National Center for Biotechnology Information Gallus gallus databases revealed 4253 GI (GenInfo Identifier) numbers with the sum of the same 11 tissues examined in the Crested Ibis. To interpret the obtained proteomics data, it was verified in detail with the data obtained from the brain of the Crested Ibis. It has been reported that drebrin A is specifically expressed in adult chicken brain. In the shotgun proteomic analyses of the Crested Ibis, we identified drebrin A as a brain‐specific protein. Furthermore, Western blotting analysis of the protein preparations from 10 tissues of the Crested Ibis and 150‐day‐old hens using anti‐drebrin antibodies showed intensive expression of approximately 110 kDa polypeptides of drebrin in both brains. We believe firmly that the present data will contribute to initial and fundamental steps toward understanding the Crested Ibis proteome.     

Separation of the Taiwanese regular and deep tuna longliners in the Indian Ocean using bigeye tuna catch ratios

ABSTRACT:   Taiwanese longline (LL) fisheries operating in the Indian Ocean usually target albacore tuna (ALB), swordfish (SWO) and yellowfin tuna (YFT) using regular LL. Bigeye tuna (BET), however, is targeted using deep LL. Thus, these two types of LL are considered to be different gears as they target different tuna species. Regular or deep LL fishing is defined by number of hooks per basket (NHB): regular LL if 6 ≤ NHB ≤ 10 and deep LL if 11 ≤ NHB ≤ 20. However, NHB information was available in only some of the recent LL data (1995–1999). This situation had caused problems of biased results in stock analysis in the past. Thus, the objective of our study was to explore an effective method to separate the two types of LL fishing by considering species composition. Some intervals of BET catch ratios were found to be effective in separating the regular and deep LL catches, i.e. 0.0 ≤ BET/(BET + ALB + SWO) ≤ 0.4 and 0.8 ≤ BET/(BET + ALB) ≤ 1.0, respectively. Using these two separators, the LL known data set (1995–1999) (learning data set) was classified. Correct classification occurred in 67.7% of the data, while 23.1% of the data were unclassified (11.9% due to zero catches and 11.2% due to classification into both LL types), and 9.2% were misclassifications. Then, using the methods developed, the LL unknown data set in the historical data (1979–1999) was classified and nominal CPUE values were calculated for four species. The CPUE trends based on this study were likely to be more reliable than those of previous studies.     

Validity of fluctuating asymmetry as a gauge of genetic stress in ayu stocks

An increasing demand for stocking of hatchery-reared ayu, Plecoglossus altivelis, has aroused concerns about their genetic status which has an effect on their post-stocking performance and the conservation of native biodiversity. Instead of costly analysis, fluctuating asymmetry (FA) was examined to test its suitability as an indirect measure of genetic diversity. Two bilateral traits, pectoral and pelvic fin rays, were targeted, and two wild and four hatchery populations of ayu were sampled for comparison. Frequency of FA in soft-rays was not similar between specimens in both pelvic and pectoral fins. The wild populations did not show FA incidences lower than the hatchery populations, suggesting a considerable degree of environmental stress operating in the wild populations. Comparison between the hatchery populations showed overall increasing FA incidence with the decrease in genetic diversity, although the correlation was not complete in detail. In conclusion, FA can be used as a convenient tool to compare genetic status, but quantified evaluation is rather limited to monitoring changes in the genetic variation within a hatchery population.     

Assessment of biomarkers influencing treatment success on small intestinal lymphoma in dogs

This study aimed to determine a reliable therapeutic biomarker for localized small intestinal lymphoma (SIL) in dogs based on clinical and histopathological features. We retrospectively investigated 84 dogs with localized SIL, including 36 dogs receiving surgery and 48 dogs receiving chemotherapy. The dogs receiving surgery were divided into two subgroups: 18 dogs (group 1) with overall survival (OS) <120 days (median OS) and 18 dogs (group 2) with OS ≥120 days. Correspondingly, the dogs receiving chemotherapy were divided into 24 dogs (group 3) with OS <98 days (median OS) and 24 dogs (group 4) with OS ≥98 days. Clinical, haematological, histopathological and immunohistochemical analyses were comparatively evaluated among the four subgroups. There was no significant difference in OS between the surgery and chemotherapy groups. In dogs receiving surgery, the rate of Ki67‐positive cells was significantly increased in group 1 compared to group 2 and showed no significant difference between groups 3 and 4. In dogs receiving chemotherapy, the rate of O6‐methylguanine‐DNA methyltransferase (MGMT) was significantly higher in group 3 than in group 4 and showed no significant difference between groups 1 and 2. Additionally, our data showed that OS in dogs with higher Ki67 expression might be significantly increased by chemotherapy than by surgery, that of those with higher MGMT expression might be significantly increased by surgery than by chemotherapy, and Ki67 and MGMT were independent of each other. Indices of Ki67 and MGMT are suggested therapeutic biomarkers to determine the optimal first‐line treatment for localized SIL in dogs.     

Effect of the long-term application of organic matter on soil carbon accumulation and GHG emissions from a rice paddy field in a cool-temperate region,Japan-II. Effect of different compost applications-

ABSTRACT

The influence of long-term application of different types of compost on rice grain yield, CH₄ and N₂O emissions, and soil carbon storage (0 ? 30 cm) in rice paddy fields was clarified. Two sets of paddy fields applied with rice straw compost or livestock manure compost mainly derived from cattle were used in this study. Each set comprised long-term application (LT) and corresponding control (CT) plots. The application rates for rice straw compost (42 years) and livestock manure compost (41 years in total with different application rates) were 20 Mg fresh weight ha^–1. Soil carbon storage increased by 33% and 37% with long-term application of rice straw compost and livestock manure compost, respectively. The soil carbon sequestration rate by the organic matter application was 23% higher with the livestock manure compost than with the rice straw compost. The rice grain yield in the LT plot was significantly higher than that in the corresponding CT plot with both types of compost. Although the difference was not significant in the rice straw compost, cumulative CH₄ emissions increased with long-term application of both composts. Increase rate of CH₄ emission with long-term application was higher in the livestock manure compost (99%) than that in the rice straw compost (26%). In both composts, the long-term application did not increase N₂O emission significantly. As with the rice straw compost, the increase in CH₄ emission with the long-term application of livestock manure compost exceeded the soil carbon sequestration rate, and the change in the net greenhouse gas (GHG) balance calculated by the difference between them was positive, indicating a net increase in the GHG emissions. The increase in CH₄ and net GHG emissions owing to the long-term application of the livestock manure compost could be higher than that of the rice straw compost owing to the amount of applied carbon, the quality of compost and the soil carbon accumulation. The possibility that carbon sequestration in the subsoil differs depending on the type of composts suggests the importance of including subsoil in the evaluation of soil carbon sequestration by long-term application of organic matter.     

A novel putative tyrosine kinase receptor encoded by the eph gene

Growth factors and their receptors are involved in the regulation of cell proliferation and also play a key role in oncogenesis. In this study, a novel putative kinase receptor gene, termed eph, has been identified and characterized by molecular cloning. Its primary structure is similar to that of tyrosine kinase receptors thus far cloned and includes a cysteine-rich region in the extracellular domain. However, other features of the sequence distinguish the eph gene product from known receptors with tyrosine kinase activity. Thus the eph protein may define a new class of these molecules. The eph gene is overexpressed in several human carcinomas, suggesting that this gene may be involved in the neoplastic process of some tumors.     

Isolated chloroplast division machinery can actively constrict after stretching

Chloroplast division involves plastid-dividing, dynamin, and FtsZ (PDF) rings. We isolated intact supertwisted (or spiral) and circular PDF machineries from chloroplasts of the red alga Cyanidioschyzon merolae. After individual intact PDF machineries were stretched to four times their original lengths with optical tweezers, they spontaneously returned to their original sizes. Dynamin-released PDF machineries did not retain the spiral structure and could not be stretched. Thus, dynamin may generate the motive force for contraction by filament sliding in dividing chloroplasts, in addition to pinching-off the membranes.     

Effect of using subirrigation and slit tillage to increase soybean (Glycine max) yield in clayey soils in rice paddies converted to uplands

Water stress reduces soybean (Glycine max) yield in fields converted from clayey-soil rice (Oryza sativa) paddies to uplands (upland converted paddies [UCPs]). Subirrigation and/or allowing roots to penetrate to a deeper soil layer were expected to effectively mitigate water stress. Therefore, we examined the effects of subirrigation and slit tillage on mitigating water stress in clayey soils (52% clay) in UCPs. Four treatment experiments (subirrigation, slit tillage, subirrigation control, and slit tillage control) were conducted in each of three growing seasons, with sampling for yield analysis conducted in triplicate. Following conventional tillage, a slit tillage blade was used to cut 15-mm-wide vertical slits in the surface of the soil (cutting depth = 15–20 cm) and seeds were sown 15 mm from the cut lines. Subirrigation then occurred for approximately 21–47 days, from the end of the rainy season, when water table elevation was at 35 cm below ground. We found that subirrigation only resulted in improved soybean yield in 2012, when precipitation after the flowering stage was low, whereas slit tillage significantly increased yield in all three growing seasons, including a particularly wet growing season. Overall, subirrigation and slit tillage increased soybean yield by 2% and 13%, respectively. Slit tillage also resulted in a significantly greater taproot length and root density. Stomatal conductance at midday in about the R5–6 stages was higher in slit-tilled plots than in control plots, but only in the subirrigated field.