Cluster analysis to evaluate disease risk in periparturient dairy cattle

Predicting periparturient disease risk is of immense value to the dairy industry. Periparturient diseases are interrelated with each other; however, predicting the onset risk of these diseases has predominantly been based on a single blood parameter for a single disease. This study examined a new diagnostic method to predict the risk of periparturient diseases. We conducted cluster analysis of multiple blood constituents from 20 Holstein cattle at 1 week post‐partum, and the cattle were divided into two groups, A or B. We then compared the periparturient and early‐lactation blood constituents of these groups. Group B had significantly higher 3‐hydroxybutyric acid concentrations and were suspected to have subclinical ketosis. Group B also had significantly lower calcium concentrations, with a tendency for subclinical hypocalcemia. We also performed discriminant analysis using blood parameters at 1 week post‐partum, which grouped the population into the same two groups as the cluster analysis based on three variables: inorganic phosphorus, calcium, and either phospholipids or total cholesterol. We further showed that these discriminant functions could be used to predict the risk of periparturient disease even before parturition. Our results indicate that cluster analysis with multiple blood constituents is useful for predicting periparturient disease risks.     

The investigation of probiotic potential of lactic acid bacteria isolated from traditional Mongolian dairy products

The aims of this study were to investigate the diversity of lactic acid bacteria (LAB) isolated from traditional Mongolian dairy products, and to estimate the probiotic potential of the isolated strains. We collected 66 samples of the traditional Mongolian dairy products tarag (n = 45), airag (n = 7), aaruul (n = 8), byasulag (n = 1) and eezgii (n = 5), from which 543 LAB strains were isolated and identified based on 16S ribosomal DNA sequence. The predominant species of those products were Lactobacillus (L.) delbrueckii ssp. bulgaricus, L. helveticus, L. fermentum, L. delbrueckii ssp. lactis and Lactococcus lactis ssp. lactis. However, we could not detect any LAB strains from eezgii. All LAB isolates were screened for tolerance to low pH and to bile acid, gas production from glucose, and adherence to Caco‐2 cells. In vitro, we found 10 strains possess probiotic properties, and almost identified them as L. plantarum or L. paracasei subspecies, based on 16S ribosomal DNA and carbohydrate fermentation pattern. These strains were differentiated from each other individually by randomly amplified polymorphic DNA analysis. Additionally, it was notable that 6/10 strains were isolated from camel milk tarag from the Dornogovi province.     

Analysis of expressed sequence tags in developing secondary xylem and shoot of <Emphasis Type="Italic">Acacia mangium</Emphasis>

Acacia mangium is a fast-growing tree widely planted in tropical countries because of its rapid growth, high wood density, high fiber quality, and good adaptability. Despite its importance as a fiber source in the pulp and paper industry, a large-scale analysis of expressed sequence tags (ESTs) has not been performed in A. mangium. In this study, we sequenced 10 752 clones of a normalized complementary DNA (cDNA) library prepared from A. mangium developing secondary xylem and shoot, and obtained a total of 8963 ESTs. The ESTs were assembled into 6220 unigenes comprising 1614 contigs and 4606 singletons. The unigene set was then subjected to various bioinformatic analyses. BlastN searches of the unigene set against the Gene Index Databases of soybean, Medicago truncatula, Lotus japonicus, grape, poplar, spruce, and pine demonstrated that the largest number of unigenes shared homologies with the soybean Gene Indices. BlastX searches against the TAIR9 peptide database enabled us to annotate the unigenes. Based on the annotation, we discussed whether the unigenes involved in the cell cycle, cell growth, shoot apical meristem development, and cell wall biosynthesis were present. This new genomic resource will accelerate the functional genomics of wood formation and molecular breeding to improve the wood properties of A. mangium.     

Efficient epoxidation of olefins with >/=99% selectivity and use of hydrogen peroxide

Epoxides are an important class of industrial chemicals that have been used as chemical intermediates. Catalytic epoxidation of olefins affords an interesting production technology. We found a widely usable green route to the production of epoxides: A silicotungstate compound, [gamma-SiW10O34(H2O)2]4-, is synthesized by protonation of a divacant, lacunary, Keggin-type polyoxometalate of [gamma-SiW10O36]8- and exhibits high catalytic performance for the epoxidation of various olefins, including propylene, with a hydrogen peroxide (H2O2) oxidant at 305 kelvin. The effectiveness of this catalyst is evidenced by >/=99% selectivity to epoxide, >/=99% efficiency of H2O2 utilization, high stereospecificity, and easy recovery of the catalyst from the homogeneous reaction mixture.     

Plasma cortisol and prolactin secretion rhythms in cattle under varying external environments and management techniques

The secretion rhythms of plasma cortisol (CORT) and prolactin (PRL), hormones related to stress responsiveness and biological rhythm and controlled by light and temperature, were investigated under varying external environments and different management techniques. Serial blood samples were collected from female cattle reared in free‐stall and freely fed (FF) conditions (n = 4) or in tie‐stall and restricted feeding (RF) conditions (hay and concentrate twice daily, n = 4). Plasma CORT and PRL concentrations, eating behavior, and environmental parameters were analyzed. Cyclic patterns for each parameter were examined using spectral analysis, and correlations between CORT, PRL and other parameters were investigated using cross‐spectral analysis. Under FF conditions, CORT secretion was not related to the lighting intensity and eating behavior. However, under RF conditions, the CORT secretion rhythm showed a distinct correlation with lighting intensity and eating behavior. Under FF conditions, the PRL secretion rhythm was similar in all seasons. However, under RF conditions, the PRL rhythm oscillated with high frequency in summer and low frequency in winter, indicating a seasonal change in rhythm. The present study demonstrates that hormone secretion rhythms change under different environments and management techniques.     

Carotenoid accumulations and carotenogenic gene expressions in the petals of Eustoma grandiflorum

Eustoma grandiflorum is one of the leading cut‐flowers in Japan. There are market demands for cultivars with deep‐yellow flowers, but they have never been bred successfully. By investigating the carotenoid accumulation and carotenogenic gene expressions, this study attempted to explore the reasons that block the formation of deep‐yellow colour in Eustoma. High performance liquid chromatography analysis showed that the carotenoid compositions in petals were similar to those in leaves, accumulating mainly lutein, violaxanthin and β‐carotene. The total carotenoid contents decreased as the petals matured in all the cultivars tested. Quantitative real‐time PCR analysis showed that the expression levels of PSY, LCYB, ZDS and LCYE showed significant differences between white and pale‐yellow petals or between petals and leaves, indicating that these enzymes may play a key role in the carotenoid biosynthesis in E. grandiflorum. The expression levels of CCD4 were high in both pale‐yellow and white petals during development, suggesting that carotenoid degradation activity is high in the petals. We then conclude that the total carotenoid accumulation level could be determined by the balance between carotenoid biosynthesis and degradation activities.     

Plasticity in root system architecture of rice genotypes exhibited under different soil water distributions in soil profile

ABSTRACT

The root system architecture (RSA) has been reported to be determined by several root traits such as branching, elongation, and growth angle. This study aimed to evaluate the genotypic variation of plasticity in RSA in response to different soil water distributions in a soil profile. IR64 (shallow root system), YTH183 (adapted to rainfed lowland conditions due to high plasticity in root elongation), and Kinandang Patong (KP – deep root system) were grown in PVC root boxes for 34 days under continuously waterlogged conditions and with soil moisture fluctuations (SMF). For SMF, watering was done from the top of the root box (TI-SMF) or from the bottom of the root box (BI-SMF). A water gradient was observed more clearly in BI-SMF than in TI-SMF, while mean soil moisture content in the root box was kept at around 23% (v/v) after first irrigation in both SMF treatments. RSA changed drastically with SMF in all cultivars, all of which tended to shift root distribution to deeper soil layers in response to SMF. Such changes in RSA resulted from different degrees of plasticity exhibited mainly in nodal root and L-type lateral root development. YTH183 showed a greater ability to change its root growth angle and thus its root distribution in the deeper soil layer compared to IR64 and KP under SMF, indicating that YTH183 could help to improve RSA in cultivars adapted to SMF.     

Structural basis of biological N2O generation by bacterial nitric oxide reductase

Nitric oxide reductase (NOR) is an iron-containing enzyme that catalyzes the reduction of nitric oxide (NO) to generate a major greenhouse gas, nitrous oxide (N(2)O). Here, we report the crystal structure of NOR from Pseudomonas aeruginosa at 2.7 angstrom resolution. The structure reveals details of the catalytic binuclear center. The non-heme iron (Fe(B)) is coordinated by three His and one Glu ligands, but a His-Tyr covalent linkage common in cytochrome oxidases (COX) is absent. This structural characteristic is crucial for NOR reaction. Although the overall structure of NOR is closely related to COX, neither the D- nor K-proton pathway, which connect the COX active center to the intracellular space, was observed. Protons required for the NOR reaction are probably provided from the extracellular side.     

Pyrolysis reactions of Japanese cedar and Japanese beech woods in a closed ampoule reactor

The chemical structures of hemicellulose and lignin are different for two distinct types of wood, i.e., softwood and hardwood. Such differences are expected to affect pyrolysis behavior. In this article, the differences are discussed for Japanese cedar wood (a softwood) and Japanese beech wood (a hardwood) pyrolyzed in a closed ampoule reactor (N₂/600°C/40–600 s). Oven-dried samples were used to eliminate the influence of initial water. Demineralized samples (prepared by acid washing) were also used to determine the influence of the minerals contained in the wood samples. As a result, some features were disclosed for secondary char (coke) formation, char reactivity, tar formation, and subsequent decomposition.