Modeling the coastal ecosystem complex: present situation and challenges

To enhance numerical modeling of the coastal ecosystem complex (CEC), we reviewed the CEC and related concepts along with the current coastal ecosystem model framework in this study. We identified two model implementation paths from the initial objectives to numerical models: specific model building, and the use of existing model frameworks. As the CEC is still at the conceptual stage, both paths are possible. Four important ecological features of CEC modeling (population connectivity, habitat heterogeneity, ontogeny of organisms, and trophic interactions) were also identified. Models for population connectivity, species distributions, life histories, and food webs were categorized using these features. We found that some previously established concepts (between–habitat interactions, coastal ecosystem mosaic, and seascape nursery) overlap with the CEC concept. Several existing integrated model frameworks were reviewed, focusing on their potential to simulate CEC processes. Building specific models for the CEC at the current conceptual stage will be challenging, and modification of existing models will be needed if they are to be used for CEC modeling. Habitat function, ontogenetic development in early life stages, and recruitment variability are important factors when modifying existing models for the development of CEC models. Although model complexity should become high to reproduce observed ecoclogical processes, an intermediate level of model ccomplexity is feasible to decrease parameter uncertainty in models for fisheries management.     

Evaluation of the global DNA methylation in canine mast cell tumour samples by immunostaining of 5‐methyl cytosine

Cutaneous mast cell tumours (MCT) are the most common skin tumour in dogs, and to our knowledge, there are no previous studies regarding the global methylation of these tumours. DNA hypomethylation and hypermethylation have been described in several tumours and both mechanisms can lead to carcinogenesis. The purpose of this study was to evaluate the global DNA methylation in canine MCT. A total of 48 MCT samples were classified in grades 1, 2 and 3 or high‐grade or low‐grade. Monoclonal antibodies were used for the immunohistochemical detection of the 5‐methylcytosine. The immunostained nuclei were classified in strong, weak or negative pattern, and these were quantified in five distinct microscopic fields (40× objective) in each slide. The results showed that global DNA hypomethylation was predominant in grade 3, high‐grade, less differentiated MCT. These epigenetic changes in neoplastic mast cells warrant further detailed investigation aiming the establishment of tumour epigenetic therapies.     

A new interspecific pear cultivar Yutaka: highly resistant to the two major diseases scab and black spot on Asian pears

Phytoplasma suspected symptoms of little leaf, flat stem, witches’ broom and leaf yellowing were recorded on the four legume species, cowpea (Vigna unguiculata (L.) Walp.), pigeon pea (Cajanus cajan (L.) Millsp.), lentil (Lens culinaris Medikus) and mung bean (Vigna radiata (L.) Wilczek) in the states of Delhi, Uttar Pradesh (UP) and Kerala from 2014 to 2016. DNA specific fragments of approximately 1.3 kb were amplified from symptomatic samples of cowpea, pigeon pea, lentil and mung bean in nested PCR assays by using two sets of universal phytoplasma nested specific primers P1/P7 followed by 3Far/3Rev. No DNA amplifications were observed in any of the non-symptomatic legume samples with same primer pairs. Pair wise sequence comparison, phylogeny and virtual RFLP analysis of 16S rDNA sequences of the four legume species confirmed the association of four different groups and subgroups of phytoplasmas in the present study. The mung bean witches’ broom at Delhi was identified to be associated with strain related to ‘Ca. P. aurantifolia’ (16SrII-D), pigeon pea little leaf at Faizabad, UP with strain related to ‘Ca. P. phoenicium’ (16SrIX-C), lentil witches’ broom at Faizabad, UP with ‘Ca. P. trifolii’ (16SrVI-D) and cow pea flat stem disease at Kerala with ‘Ca. P. cynodontis’ (16SrXIV-A). Association of ‘Ca. P. cynodontis' (16SrXIV-A) infecting cowpea, ‘Ca. P. trifolii’ (16SrVI-D) in lentil and phytoplasmas strain related to ‘Ca. P. phoenicium’ (16SrIX-C) infecting pigeon pea are the new reports to the world.     

Factors governing cesium adsorption of charcoals in aqueous solution

Cesium adsorption by commercial charcoals was examined to elucidate the mechanisms for capturing cesium ions in aqueous solution. Changes in the adsorption ability of charcoals due to water extraction (water washing) were investigated to develop practical cesium adsorptives based on charcoal. The commercial charcoals examined included mangrove charcoal (MC) and ubamegashi (Quercus phillyraeoides A. Gray) bincho charcoal (BC). Data from the two charcoals were compared with those of Japanese oak (Quercus serrata Thunb. and/or Quercus crispula Blume) charcoal (OC) reported previously. Aqueous cesium chloride solution (2.50 × 10^?5 mol/L) was used as a sample solution for the adsorption study. Charcoal powder was used as an adsorbent after passing through a 60-mesh sieve. The powders were characterized using methods, such as Raman spectroscopy, X-ray fluorescence spectrometry, and infrared photoacoustic spectroscopy. The results indicated that MC, which was manufactured at the lowest possible temperature and had the smallest specific surface area, possessed the greatest ability to adsorb cesium. The MC also had the great cesium-adsorption ability in weak acidic solution and maintained the ability even after lengthy extraction treatments.     

Novel reovirus isolation from an Ostrich (Struthio camelus) in Japan

An orthoreovirus was isolated from an Ostrich (Struthio camelus) and rapidly identified as orthoreovirus by the rapid determination of viral RNA sequences (RDV) system and electron microscopy. Phylogenetic analysis of the sigma A protein indicated that the isolate belonged to avian species and was closely related to chicken orthoreovirus strain 138. The results of the present study indicated that an ostrich orthoreovirus is slight different from other chicken orthoreoviruses and provided evidence of diversity among avian orthoreoviruses. To our knowledge, this is the first genetic report of an orthoreovirus isolated from an ostrich.     

Roles of raccoons in the transmission cycle of severe fever with thrombocytopenia syndrome virus

The present study investigated severe fever with thrombocytopenia syndrome virus (SFTSV) infection in raccoons in Wakayama Prefecture from 2007 to 2019. To perform surveillance, an enzyme-linked immunosorbent assay (ELISA) was established, and the sensitivity and specificity of the ELISA were 100% in comparison with a 50% focus-reduction neutralization assay. Using the established ELISA, we performed serosurveillance of SFTSV infection in 2,299 raccoons in Tanabe region, Wakayama Prefecture from 2007 to 2019. The first anti-SFTSV-positive raccoon was captured in October 2009. The seroprevalence of SFTSV infection was <10% between April 2009 and March 2013, 23.9% between April 2013 and March 2014, 37.5% between April, 2014 and March 2015, and over 50% from April 2015. Next, we performed detection of SFTSV genes in sera of raccoons captured in Wakayama Prefecture after April 2013. The results indicated that 2.4% of raccoons were positive for SFTSV genes and that the frequency of SFTSV infection among raccoons between January and March (0.7%) was lower than that between April and June (3.4%). In addition, virus genes were detected from many specimens, including sera and feces of two raccoons, and viral antigens were detected in lymphoid cells in lymphoid follicles in the colon by immunohistochemical staining. In conclusion, SFTSV had recently invaded the area and had rapidly spread among wild animals. The first patient in this area was reported in June 2014, indicating that raccoons are good sentinels for assessing the risk of SFTSV in humans.     

Evaluation of Starch Properties of Wheats Used for Chinese Yellow-Alkaline Noodles in Japan

The objective of the present research was to assess the functional properties of the starches isolated from Australian prime hard wheat (PH) and hard red winter wheat (HRW) in the United States. These wheats are favorably used in Japan for the production of Chinese yellow-alkaline noodles (YAN). Starches isolated from PH showed higher amylose content than those of noodle wheat but lower than bread wheat. Analysis of swelling power showed that PH starch had lower values than noodle wheat starches but higher values than bread wheat starches. By contrast, HRW starch showed relatively higher amylose content and lower swelling power. There were large differences in the starch pasting properties between PH and HRW. High-performance size-exclusion chromatography studies on the components leached from the starch (80°C, 20 min) showed that PH starch had a somewhat characteristic leaching profile. Its peak ratio of high molecular weight region to low molecular weight region was greater than that of HRW starch. PH starch also characterized by having lower endothermal enthalpy (ΔH) in amylose-lipid transition. The eating quality assessment for YAN revealed that PH had more elastic texture than HRW. Additional reconstitution studies showed that these quality differences could be attributable to its starch properties.