A fine‐scale genetic linkage map reveals genomic regions associated with economic traits in walnut (Juglans regia)

A genetic linkage map of walnut containing 2,220 single nucleotide polymorphisms (SNPs) in 16 linkage groups (LGs) was constructed using an F₁ mapping population from a cross between “Chandler” and “Idaho,” two contrasting heterozygous parents. Five quantitative yield traits, lateral fruitfulness, harvest date and three nut traits (shell thickness, nut weight and kernel fill) were then mapped on to linkage groups. A significant quantitative trait locus (QTL) in LG 11 with negative additive effects suggested heterozygote superiority in the expression of lateral bearing. A set of three QTLs explaining ~10% of the variation in harvest date was located in LG 1. Shell thickness, nut weight and kernel fill were under the control of two to three linked pleiotropic QTLs in LG 1 segregating from “Idaho.” The marginal positive additive effects of QTLs for harvest date, shell thickness and nut weight and small negative additive effects for kernel fill suggested that the QTLs had a marginal effect on the expression of these traits.     

Biodiversity,ecological status and conservation priority of the fish of the River Alaknanda,a parent stream of the River Ganges (India)

1. The River Alaknanda is a tributary of the River Ganges, originating from the Garhwal Himalaya in India and sustaining about 39 fish species from 15 genera and five families. 2. A diversity index has been calculated for the fish communities ranging from 0.407 to 0.593; no significant difference in diversity was noted at the three sampling sites which is attributed to the homogeneity of the ecological conditions. A similarity index was found to be high between the sampling sites and ranged from 93.47 to 100. 3. The categories of threats to the fish and priority for species conservation have been determined. Fourteen species were assigned as Abundant, seven species as Vulnerable, 15 species at Lower Risk, one species as Data Deficient while two species were assigned as Endangered. 4. The conservation of fish has been given little attention in India. The options for the conservation of the fish dwelling in the Alaknanda include ex situ and in situ conservation, habitat restoration, translocation and captive breeding. 5. The creation of fish sanctuaries and public awareness of the importance of fish species and their conservation will be critical for the proper conservation and management of the Garhwal Himalayan fish. Significantly, there are some parts of the river where fish are preserved out of religious sentiments. Careful nurturing of such sentiments may prove to be highly beneficial. © 1998 John Wiley & Sons, Ltd.     

Development and characterization of cell lines derived from rohu, Labeo rohita (Hamilton), and catla, Catla catla (Hamilton)

Two new cell lines, designated RE and CB, were derived from the eye of rohu, Labeo rohita , and the brain of catla, Catla catla , respectively. The cell lines were maintained in Leibovitz's L-15 supplemented with 20% foetal bovine serum. The RE cell line was sub-cultured for more than 70 passages and the CB cell line for more than 35 passages. The RE cells are rounded and consist predominantly of epithelial cells. The CB cell line consists of predominantly fibroblastic-like cells. Both cell lines are able to grow at temperatures between 25 and 32 °C with an optimum of 28 °C. The growth rate of the cells increased as the foetal bovine serum concentration increased from 2% to 20% at 28 °C, with optimum growth at concentrations of 15% or 20% foetal bovine serum. The cells were successfully cryopreserved and revived at different passage levels. The cell lines were not susceptible to four marine fish viruses. Extracellular products from Aeromonas sp . were toxic to the cell lines. When the cells were transfected with plasmid eukaryotic green fluorescent protein (pEGFP [Clontech, Carlsbad, CA, USA]) vector DNA, a significant fluorescent signal was observed suggesting that these cell lines could be a useful tool for transgenic and genetic manipulation studies. Polymerase chain reaction amplification of mitochondrial 12S rRNA from rohu and catla confirmed that the cell lines originated from these fish species. The cell lines were further characterized by immunocytochemistry using confocal laser scanning microscopy.     

Molecular markers and their applications in wheat breeding

In recent years, considerable emphasis has been placed on the development of molecular markers to be used for a variety of objectives. This review attempts to give an account of different molecular markers—restriction fragment length polymorphisms (RFLPs), random amplified polymorphic DNAs (RAPDs), sequence-tagged sites (STS), DNA amplification fingerprinting (DAF), amplified fragment length polymorphisms (AFLPs) and microsatellites (STMS)—currently available for genome mapping and for tagging different traits in wheat. Other markers, including microsatellite-primed polymerase chain reaction (MP-PCR), expressed sequence tags (ESTs) and single nucleotide polymorphisms (SNPs) are also discussed. Recent information on synteny in cereal genomes, marker-assisted selection, marker validation and their relevance to cereal breeding in general and wheat breeding in particular are also examined.     

Use of local and axial pattern flaps for reconstruction of the hard and soft palate

There are numerous conditions that may result in defects of the hard and soft palate. Reconstruction of these defects may be difficult due to anatomical limitations and limited tissue availability. The majority of palate defects, even when large, may be closed using local and/or axial pattern flaps, while other more advanced techniques such as free tissue transfer and prosthetic implants are required in a smaller number of cases. This article describes the use of local and axial pattern flaps in the reconstruction of the hard and soft palate.     

Delineation of Inheritance Pattern of Aleurone Layer Colour Through Chemical Tests in Rice

Background

Rice aleurone layer develops different colours with various chemical tests that may help to develop some rapid tests for identification/grouping of rice varieties. Understanding the colour inheritance pattern could enable to develop chemical clues that may help for genetic purity analysis along with grow-out-test.

Results

In this study, inheritance pattern of aleurone layer colour was studied in parents, F₁ and F₂ progenies derived from the crosses IR 36 × Acc. No. 2693 and IR 64 × Acc. No. 2693. The parent IR 36 showed light yellow (NaOH/KOH) and brown (phenol/modified phenol test) colour; whereas, Acc. No. 2693 revealed wine red/dark wine red (NaOH/KOH) and light brown colour/no reaction (phenol/modified phenol test). In contrary, another parent IR 64 exhibited light yellow (KOH/NaOH) and dark brown (phenol, modified phenol) colour. Both the F₁ showed an intermediate light wine red colour (NaOH/KOH) and dark brown (phenol and modified phenol) colour, which is dominant over their one of the parents. The colour pattern with standard phenol/modified phenol, NaOH and KOH tests in F₂ progenies of both the crosses showed 9:7 (complementary gene interaction) and 11:5 ratios (reciprocal dominance modification of recessive alleles), respectively.

Conclusions

Our findings clearly elucidate the colour inheritance pattern in rice that may facilitate to develop rapid chemical tests to identify/ group the varieties for genetic purity analysis.

     

Marker‐assisted backcrossing to develop foliar disease‐resistant genotypes in TMV 2 variety of peanut (Arachis hypogaea L.)

TMV 2 is a very popular peanut variety among the Indian farmers, but it is highly susceptible to fungal foliar diseases like late leaf spot (LLS) and rust. Marker‐assisted backcrossing (MABC) in TMV 2 using foliar disease‐resistant donor, GPBD 4 and the disease resistance‐linked markers (GM2009, GM2079, GM2301, GM1839 and IPAHM103) resulted in a large number of backcross populations and also straight cross populations. Foreground selection followed by field evaluation under disease epiphytotic conditions could identify a few superior genotypes. Two homozygous backcross lines TMG‐29 and TMG‐46 showed enhanced resistance to LLS and rust diseases (score of 3.00 for both) along with 71.0% and 62.7% increase in the pod yield per plot, respectively, over the check, TMV 2. These foliar disease‐resistant and productive lines can be released as commercial varieties or can be used as genetic resources in the peanut improvement.     

Effect of long-term balanced and imbalanced inorganic fertilizer and FYM application on chemical fraction of DTPA-extractable micronutrients and yields under rice–wheat cropping system in mollisols

The imbalanced use of chemical fertilizers under intensive cultivation practices over a period of years leads to various soil-associated problems particularly nutrient availability. Thus, to examine the effect of long-term application of balanced and imbalanced inorganic fertilizer and farm yard manure (FYM) application on the chemical fraction of DTPA-extractable micronutrients under rice–wheat cropping system after 29 years, the observations were recorded from the ongoing field experiment at Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, India. An application of balanced inorganic fertilizer with FYM in rice, while without FYM in wheat significantly improved the DTPA-extractable Zn, Fe, Mn and Cu after rice and wheat crops in both the surface and sub-surface soil layers. Lowest DTPA-extractable Zn, Fe, Mn and Cu were recorded, in surface and sub-surface soil under rice and wheat crops in control. The highest DTPA-extractable Zn, in both surface and sub-surface layers of rice (3.31, 1.62 mg kg⁻¹, respectively) and wheat (2.96, 0.99 mg kg⁻¹, respectively) was recorded because of application of N₁₈₀+P₈₀+K₄₀+Zn(F) + FYM in rice and N₁₈₀+P₈₀+K₄₀+Zn(F) in wheat. However, the DTPA-extractable Fe, Mn and Cu were highest in rice and wheat because of N₁₂₀+P₄₀+K₄₀+FYM and N₁₂₀+P₄₀+K₄₀ application, respectively. The balanced use of inorganic fertilizer with FYM (N₁₈₀+P₈₀+K₄₀+Zn(F) + FYM) in rice and without FYM [N₁₈₀+P₈₀+K₄₀+Zn(F)] in wheat supported the highest rice (6.74 t ha⁻¹) and wheat (3.50 t ha⁻¹) grain yields, while lowest in control. Based on the study results, long-term application of FYM at 5 tonnes ha⁻¹ in rice crop sustained the availability of DTPA-extractable cationic micronutrients to rice and wheat in Mollisols.     

Biochemical and histochemical traits: a promising way to screen resistance against spot blotch (Bipolaris sorokiniana) of wheat

Spot blotch caused by Bipolaris sorokiniana is a serious disease of wheat in warmer and humid regions of the world. Three blighting components, area under disease progress curve (AUDPC), disease severity (DS) and lesion size along with four biochemical and histochemical factors viz., total phenol content (TPC), chlorophyll content (CHC), phenylalanine ammonia-lyase (PAL) activity and lignin deposition were studied in a recombinant inbred lines (RILs) population involving parents “Sonalika” (susceptible) and “Yangmai 6” (resistant). The objective was to identify one or more robust and reliable tools of resistance, physical, biochemical or histochemical, to facilitate selection against spot blotch. The DS, AUDPC and lesion size were higher in the susceptible parent and RILs compared to the resistant. The mean TPC (246 mg Gallic acid g^?1 fresh weight) of the most resistant RIL was significantly higher than the most susceptible (181.5 mg Gallic acid g^?1 fresh weight) at 48 h after inoculation (hai). The mean SPAD value for CHC varied between 48.8 in the most resistant RILs to 8.8 in the most susceptible, while the mean PAL varied between 928.4 and 96.0 μmoles Cinnamic acid mg^-1 fresh weight at 48 hai in resistant and susceptible RILs, respectively. Likewise, lignin deposition was significantly higher in resistant RILs compared to the susceptible. The biochemical and histochemical parameters were significantly correlated with resistance and appeared robust for facilitating screening of breeding material and for increased precision in phenotyping against spot blotch.     

Effects of shade regimes and planting geometry on growth,yield and quality of the natural sweetener plant stevia (Stevia rebaudiana Bertoni) in north-western Himalaya

During 2008 and 2009, field experiments were conducted at the research farm of CSIR-Institute of Himalayan Bioresource Technology, Palampur, India to assess the effect of shade levels (no shade, 25% shade, 50% shade, 75% shade) and plant geometry levels [30 × 15 cm (north–south, N–S), 45 × 10 cm (N–S), 30 × 15 cm (east–west, E–W) and 45 × 10 cm (E–W)] on the growth, yield and quality of stevia. Plant development was fastest in controls and slowest in stevia plants growing at minimum light (75% shade). These plants showed delayed bud formation and flowering. Significantly, higher dry leaf yield was recorded when the crop was grown under 25% shading than under 50 and 75% shade. Total steviol glycosides content decreased with increasing shade levels. All shade levels resulted in the same leaf-to-stem ratio, which was significantly higher than that obtained under ambient light. Plant geometry significantly affected the number of leaves and leaf dry weight plant^–1. During both years, dry leaf weight was highest in the wider row spacing (45 × 10 cm) than in the narrow row spacing (30 × 15 cm). Stevia spaced at 30 × 15 cm in an E–W direction recorded significantly higher total steviol glycosides at 2 months after transplanting (MAT).