Physical carbon‐sequestration mechanisms under special consideration of soil wettability

The protective impact of aggregation on microbial degradation through separation has been described frequently, especially for biotically formed aggregates. However, to date little information exists on the effects of organic‐matter (OM) quantity and OM quality on physical protection, i.e., reduced degradability by microorganisms caused by physical factors. In the present paper, we hypothesize that soil wettability, which is significantly influenced by OM, may act as a key factor for OM stabilization as it controls the microbial accessibility for water, nutrients, and oxygen in three‐phase systems like soil. Based on this hypothesis, the first objective is to evaluate new findings on the organization of organo‐mineral complexes at the nanoscale as one of the processes creating water‐repellent coatings on mineral surfaces. The second objective is to quantify the degree of alteration of coated surfaces with regard to water repellence. We introduce a recently developed trial that combines FTIR spectra with contact‐angle data as the link between chemical composition of OM and the physical wetting behavior of soil particles. In addition to characterizing the wetting properties of OM coatings, we discuss the implications of water‐repellent surfaces for different physical protection mechanisms of OM. For typical minerals, the OM loading on mineral surfaces is patchy, whereas OM forms nanoscaled micro‐aggregates together with metal oxides and hydroxides and with layered clay minerals. Such small aggregates may efficiently stabilize OM against microbial decomposition. However, despite the patchy structure of OM coating, we observed a relation between the chemical composition of OM and wettability. A higher hydrophobicity of the OM appears to stabilize the organic C in soil, either caused by a specific reduced biodegradability of OM or indirectly caused by increased aggregate stability. In partly saturated nonaggregated soil, the specific distribution of the pore water appears to further affect the mineralization of OM as a function of wettability. We conclude that the wettability of OM, quantified by the contact angle, links the chemical structure of OM with a bundle of physical soil properties and that reduced wettability results in the stabilization of OM in soils.     

Physical properties of a Luvisol for different long‐term fertilization treatments: I. Mesoscale capacity and intensity parameters

The physical properties of a Luvisol derived from loess near Bonn, Germany, under different long‐term fertilization treatments were examined. For the investigation of the impact of farmyard manure (FYM) on soil strength at the mesoscale (100 to 300 cm³ soil cores), undisturbed samples were taken from two different depths (10 and 40 cm), either with no fertilization at all, with full mineral fertilization, with FYM only, and with both mineral and organic fertilization. We investigated hydraulic and mechanical parameters, namely precompression stress, pore‐size distribution, saturated hydraulic and air conductivity, and calculated pore connectivity. Long‐term organic fertilization resulted in significantly more and coarser pores which in addition were more conductant and mechanically stronger by trend. Mineral fertilization also increased pore volume by trend but not pore functionality. Mechanical strength generally increased with fertilization by trend, however, was reduced again when organic and mineral fertilization were combined. Nonetheless, FYM led to relatively higher soil strength as the FYM‐treated plots with lower bulk density attained similar soil strength as the unfertilized but denser plots and thus supported the soil‐improving impact of organic amendments. The subsoil physical properties were rather unaffected by fertilization, but were dominated by texture.     

Methods for evaluating human impact on soil microorganisms based on their activity,biomass, and diversity in agricultural soils

The present review is focused on microbiological methods used in agricultural soils accustomed to human disturbance. Recent developments in soil biology are analyzed with the aim of highlighting gaps in knowledge, unsolved research questions, and controversial results. Activity rates (basal respiration, N mineralization) and biomass are used as overall indices for assessing microbial functions in soil and can be supplemented by biomass ratios (C : N, C : P, and C : S) and eco‐physiological ratios (soil organic C : microbial‐biomass C, qCO₂, qN_min). The community structure can be characterized by functional groups of the soil microbial biomass such as fungi and bacteria, Gram‐negative and Gram‐positive bacteria, or by biotic diversity. Methodological aspects of soil microbial indices are assessed, such as sampling, pretreatment of samples, and conversion factors of data into biomass values. Microbial‐biomass C (µg (g soil)^–1) can be estimated by multiplying total PLFA (nmol (g soil)^–1) by the F_PLFA‐factor of 5.8 and DNA (µg (g soil)^–1) by the F_DNA‐factor of 6.0. In addition, the turnover of the soil microbial biomass is appreciated as a key process for maintaining nutrient cycles in soil. Examples are briefly presented that show the direction of human impact on soil microorganisms by the methods evaluated. These examples are taken from research on organic farming, reduced tillage, de‐intensification of land‐use management, degradation of peatland, slurry application, salinization, heavy‐metal contamination, lignite deposition, pesticide application, antibiotics, TNT, and genetically modified plants.     

Characterisation and quantification of equine interferon gamma

Interferon-gamma (IFN-gamma) is a key cytokine in cell-mediated immunity. To measure IFN-gamma production of equine lymphocytes (eqIFN-gamma), we developed a quantitative ELISA. Monoclonal antibodies (mAb) were produced against bacterially derived eqIFN-gamma. The mAbs recognised recombinant and lymphocyte-derived eqIFN-gamma in ELISA, Western blotting, as well as flow cytometric and microscopic analysis. In contrast to bacterially derived material, mammalian and insect cell-derived eqIFN-gamma was biologically active but could be neutralised by one of the monoclonal antibodies. Unexpectedly, glycosylation seemed to be required for antiviral activity of eqIFN-gamma.     

Age effects on Norway spruce (Picea abies) susceptibility to ozone uptake: a novel approach relating stress avoidance to defense

Cumulative ozone (O3) uptake and O3 flux were related to physiological, morphological and biochemical characteristics of Norway spruce (Picea abies (L.) Karst.) trees of different ages. Under ambient CO2 conditions, photosynthetic capacity (Amax) declined in mature trees when cumulative O3 uptake into needles, which provides a measure of effective O3 dose, exceeded 21 mmol m-2 of total needle surface area. A comparable decline in Amax of seedlings occurred when cumulative O(3) uptake was only 4.5 mmol m-2. The threshold O3 flux causing a significant decline in Amax ranged between 2.14 and 2.45 nmol m-2 s-1 in mature trees and seedlings subjected to exposure periods of > or = 70 and > or = 23 days, respectively. The greater O3 sensitivity of young trees compared with mature trees was associated with needle morphology. Biomass of a 100-needle sample increased significantly with tree age, whereas a negative correlation was found for specific leaf area, these changes parallel those observed during differentiation from shade-type to sun-type needles with tree ontogeny. Age-dependent changes in leaf morphology were related to changes in detoxification capacity, with area-based concentrations of ascorbate increasing during tree ontogeny. These findings indicate that the extent of O3-induced injury is related to the ratio of potentially available antioxidants to O3 influx. Because this ratio, when calculated for ascorbate, increased with tree age, we conclude that the ratio may serve as an empirical basis for characterizing age-related differences in tree responses to O3.     

Nitrogen turnover and N2O production in the forest floor of beech stands as influenced by forest management

Effects of forest management (thinning) on gross ammonification, net ammonification, net nitrification, microbial biomass, and N₂O production were studied in the forest floor of adjacent untreated control (“C”) and thinned (“T”) plots in three beech (Fagus sylvatica L.) stands in the Swabian Jura (Southern Germany) during three intensive field campaigns in the year 2004. The investigated sites are located less than 1 km apart on the slopes of a narrow valley. Due to different exposure (southwest, northeast, northwest), the three sites are characterized by warm‐dry microclimate (southwest site, SW) and cool‐moist microclimate (northeast site, NE; and northwest site, NW). Measurements at the NW site covered the second year (13 to 20 months) after thinning, and measurements at the SW and NE sites covered the sixth year (61 to 68 months) after thinning. Mean gross ammonification varied insignificantly across the six plots (range: 37.5 ? 31.2 to 51.0 ? 10.5 mg N (kg dry soil)^–1 d^–1). The SW site was characterized by very low net nitrification and nitrate (NO ) concentrations that were not significantly different between control and thinned plot. In contrast, for the thinned plot at the NE site (NET), significantly increased mean net nitrification (2.3 ? 1.2 mg N (kg dry soil)^–1 d^–1 at the NET plot vs. 0.4 ? 0.2 mg N (kg dry soil)^–1 d^–1 at the NEC plot) and mean extractable NO concentrations (43.9 ? 22.8 mg N (kg dry soil)^–1 at the NET plot vs. 4.1 ? 0.8 mg N (kg dry soil)^–1 at the NEC plot) were observed. The differences in net nitrification and NO concentrations across the research plots were related to differences in the forest‐floor C : N ratios: net nitrification increased exponentially below a threshold C : N value of about 25. The results of this study indicate that the forest floor of the warm‐dry SW site is very resistant to N loss triggered by thinning due to high C : N ratios around 30. Under the cool‐moist microclimate of the NE site, a significantly lower C : N ratio of 22.1 at the thinned plot (control plot: 26.7) coincided with significantly increased net nitrification. Thus, different responses of net nitrification to thinning under different microclimate appear to be triggered by different C : N ratios. Nitrous oxide production was mainly governed by forest‐floor water content, and since differences in water content at adjacent control and thinned plots were low, N₂O production was not significantly different between adjacent control and thinned plots.     

Fate of C- and N-labelled rhizodeposition of Lolium perenne as function of the distance to the root surface

A greenhouse rhizobox experiment was carried out to quantify the incorporation of ¹³C- and ¹⁵N-labelled rhizodeposits into different soil pools, especially into the rhizosphere microbial biomass, with increasing distances to the root surface of Lolium perenne. Five layers were analysed over 0-4.2 mm distance to an artificial root surface. C and N derived from rhizodeposition were 4.2% of total C and 2.8% of total N in soil at 0-1.0 mm distance and decreased rapidly with increasing distance. Microbial biomass C and N increased significantly towards the roots. At 0-1.0 mm distance microbial biomass C and N accounted for 66% and 29% of C and N derived from rhizodeposition, respectively. These percentages declined with increasing distance to the roots, but were still traceable up to 4.2 mm distance. Only small amounts of root released C and N were found in the 0.05 M K₂SO₄-extractable fraction. Extractable C and N derived from rhizodeposition varied around means of 4% of total C and N derived from rhizodeposition and increased only marginally with increasing distance to the roots. C derived from rhizodeposition in the non-extractable soil organic matter increased from 65 to 89% of total C derived from rhizodeposition at 0-3.4 mm distance. Conversely, microbial biomass C derived from rhizodeposition decreased from 33 to 4%. N derived from rhizodeposition in the non-extractable soil organic matter increased from 61 to 79% of total N derived from rhizodeposition at 0-2.6 mm distance, followed by a decline to roughly 55% in the two outer layers. Microbial biomass N decreased from 37 to 16% at 0-2.6 mm distance, followed by an increase to roughly 41% in the two outer layers. The C/N ratio of total C and N derived from rhizodeposition as well as that of extractable C and N derived from rhizodeposition increased with increasing distance to the roots to values above 30. In contrast, the C/N ratio of incorporated rhizodeposition C and N into the microbial biomass decreased to values less than 5 at 2.6-4.2 mm distance. The data indicate differential microbial response to C and N derived from rhizodeposition at a high spatial resolution from the root surface. The turnover of C and N derived from rhizodeposition in the rhizosphere as a function of the distance to the root surface is discussed.     

The problem of pretreatment and unintentional variations in the fumigation-extraction method for time-course measurements in the field

A control soil stored at 4°C was analyzed 38 times by fumigation-extraction during a period of 11 months to correct for variations caused by the analytical procedure. The difference in extractable C between fumigated and unfumigated samples oscillated around the average without a positive or negative trend. When data from contemporaneously extracted field samples were corrected with control soil data the variations were lowered. The deviations between corrected and uncorrected biomass C values had maxima of ±12%. Data obtained for seven dates using pre-extraction, wet-sieving, and centrifuging were compared with data obtained by the conventional procedure without any pretreatment. A negative difference from data obtained without pretreatment was found when the soil water content was decreased to 6%. The largest positive difference (+38%) was found in May during the period of highest root growth.