Development and characterization of a new set of 164 polymorphic EST‐SSR markers for diversity and breeding studies in rubber tree (Hevea brasiliensis Müll. Arg.)

Despite its economic importance and recent genome release, the need for molecular tools for Hevea brasiliensis is high. In the frame of a disease resistance study, EST sequences were retrieved from public database or generated by sequencing SSH libraries. Sequences were trimmed and microsatellite motifs searched using an ad hoc bioinformatic pipeline, and pairs of primers for the amplification of candidate markers were generated. We found a total of 10 499 unigenes from both sources of sequences, and 673 microsatellites motifs were detected using the default parameters of the pipeline. Two hundred sixty‐four primer pairs were tested and 226 (85.6%) successfully amplified. Out of the amplified candidate markers, 164 exhibited polymorphism. Relationships based on dendrograms using simple matching index and diversity statistics based on EST‐SSRs were compared with Genomic SSRs, showing the potentialities of EST‐derived microsatellites for resistance studies but also for population genetics approaches.     

Assessment of yocoboue wild oil palm (Elaeis guineensis Jacq.) from Côte d'Ivoire

Following a survey involving wild oil palm groves in Côte d’Ivoire as a whole in 1968, 17 parents were chosen at Yocoboué (southernCôte d’Ivoire). Agronomic performance of the 17 parents was assessed through Deli × Yocoboué hybrids in 3 trials grown at La Mé (Côte d’Ivoire), Mondoni and La Dibamba (Cameroon).When compared to the Deli × La Mé progenies used as controls, the Deli × Yocoboué hybrids produced 91% for total bunch weight and86% for oil yields. However, the genetic variability within the Deli × Yocoboué progenies allows to select individual progenies as productive as the Deli × La Mé controls, for breeding purposes. A study of major agronomic traits led to the choice of parent YO 11 T , which combines the largest number of favourable traits. On average, Deli × Yocobouéprogenies have slower vertical growth and are susceptible to Fusarium wilt, except 2 parents (YO 3 T and YO 9 T), which seem to be resistant.     

Variation of wood density and hydraulic properties of Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) clones related to a heat and drought wave in France

Drought response of three Douglas-fir clones (slow, intermediate and fast growing) inhabiting two different climatic regimes in France was examined. We used the hydraulic conductivity and the percent loss of conductivity due to embolism from stems and branches as well as wood microdensity measurements to determine the role of genetics in the control of embolism in this species. Conductivity and tree-ring’s microdensity variables (ring width: RW, mean ring density: MRD, minimum ring density: MID and maximum ring density: MAD) were compared in growth rings in all three clones during a typical year (2002) vs. an extremely dry year (2003). A new method was developed in order to assess axial hydraulic specific conductivity (K_s) within tree rings. The results show that branches are more resistant to embolism than stems, and that there are significant differences in embolism resistance among the clones between the two sites. K_s varied between years, sites and clones but the site exerted the most significant effect. Lartimache (more humid site during 2003) trees showed substantially higher K_s than those inhabiting Chassenoix (strongly affected by the 2003 heat and drought wave site). Wood analysis showed a significant year effect for all ring variables and a significant clone effect for all ring variables except for MAD, while the site effect was significant for MRD and MAD. The existence of a genetic control for the study traits indicates that Douglas-fir populations introduced in France may have a selection potential to face extreme climate events like the 2003 heat and drought wave.     

Kalmia removal increases nutrient supply and growth of black spruce seedlings: An effect fertilizer cannot emulate

In Canada's eastern boreal forest, the stagnant growth of black spruce (Picea mariana (Mill.) BSP) seedlings is often observed in the presence of ericaceous shrubs such as Kalmia angustifolia L. Many mechanisms, including allelopathic interference, reduced soil N mineralization, soil enzymes inhibition, and direct resource competition have been proposed to explain poor spruce growth in the presence of Kalmia. However, the relative importance of direct competition versus indirect interference remains unclear. Our objective was thus to adequately isolate the “Kalmia effect” from other growth-limiting factors and to determine if removal of Kalmia also resulted in fundamental changes in the biochemical properties of the forest floor. By sampling plots established in 2000, we evaluated how Kalmia eradication and spot fertilization influenced soil nutrient availability, N mineralization rates, microbial basal respiration and biomass, as well as planted black spruce seedling growth, dimensions, and foliar nutrient concentrations 6 years later. We measured higher extractable-P, mineralizable-N, seedling dimensions and growth rates, as well as lower extractable-K, total-K, basal respiration and microbial biomass, in plots without Kalmia than in those where Kalmia had been maintained from 2000 to 2006. Our results thus confirmed that Kalmia eradication over 6 years not only improved the growth and nutrition of black spruce seedlings, but also resulted in fundamental changes in the biochemical properties of the forest floor. We demonstrated that along with direct competition for resources, Kalmia interferes indirectly with black spruce by modifying nutrient cycling and energy fluxes in soil. Higher indices of available C in plots with Kalmia corroborates that Kalmia tannins or rhizodeposition may reduce N mineralization by stimulating microbial immobilization, a relation that however needs to be confirmed with longer term laboratory incubations. Our results indicated that although it had a positive influence on seedling growth, the fertilization effect was confined to the first few years following treatment application, and failed to influence soil processes as did Kalmia eradication. Further monitoring will indicate if the increased litterfall in fertilized plots will eventually initiate a second wave of fertilizer-induced changes to soil processes, as observed in other ecosystems.     

Genetic variability of growth and wood chemical properties in a clonal population of Eucalyptus urophylla × Eucalyptus grandis in the Congo

Thirty-four Eucalyptus urophylla × Eucalyptus grandis hybrids were evaluated with a view to selecting for improved growth and wood-quality traits for plantations in the Congo. Height, circumference at breast height and volume were measured at 12, 27, 37, 49 and 60 months. Lignin content, the syringyl/guaiacyl ratio and total extractives content were predicted by near-infrared spectroscopy using wood powder samples collected from trees at breast height. While wood chemical properties were stable and under strong genetic control, growth traits were not. The genetic correlation between lignin content and growth was weak and negative, whereas the environmental correlation was also weak but positive. The genetic improvement of E. urophylla × E. grandis clones, based on growth features, leads to a limited decrease in lignin content and syringyl content and to a limited increase in extractives content.     

Impact of deer on temperate forest vegetation and woody debris as protection of forest regeneration against browsing

A 3-year field experiment with paired exclosure (fenced areas, excluding deer) and control plots (unfenced areas, free access to deer), with two treatments with and without woody debris, was carried out at two sites in a temperate forest in eastern France. The aim of the experiment was to assess the effect of browsing by roe deer (Capreolus capreolus) and red deer (Cervus elaphus) on the diversity and richness of plant species and to test the effectiveness of using woody debris to protect seedlings and saplings from deer browsing. In presence of deer, both plant species richness and diversity were reduced the first year of the study, but this negative impact of deer then disappeared after 3 years. Deer browsing mostly affected species composition of plant communities. We observed a decrease in the abundance of preferred species such as Carpinus betulus, Rubus fructicosus, Rubus idaeus, Anemone nemorosa and Epilobium angustifolium, and palatable species such as Acer spp., Carex spp., Festuca spp. and Mycelis muralis, whereas unpalatable species such as Lamium spp., or species particularly resilient to browsing such as grasses (Brachypodium spp. and Luzula spp.) increased in abundance. The use of woody debris as protection against browsing by deer did not limit damage to seedlings and saplings of the main commercially valuable species, Abies alba and Quercus spp. Instead of limiting deer impact, use of woody debris seemed to increase the negative effect of deer browsing on regeneration in control plots relatively to those without protection.     

Organic residue mass at planting is an excellent predictor of tree growth in Eucalyptus plantations established on a sandy tropical soil

Tropical plantation forests are meeting an increasing proportion of global wood demand and comprehensive studies assessing the impact of silvicultural practices on tree and soil functioning are required to achieve sustainable yields. The objectives of our study were: (1) to quantify the effects of contrasting organic residue (OR) retention methods on tree growth and soil nutrient pools over a full Eucalyptus rotation and (2) to assess the potential of soil analyses to predict yields of fast-growing plantations established on tropical sandy soils. An experiment was set up in the Congo at the harvesting of the first rotation after afforestation of a native herbaceous savanna. Six treatments were set up in 0.26 ha plots and replicated in 4 blocks, with OR mass at planting ranging from 0 to 46.5 Mg ha⁻¹. Tree growth over the whole rotation was highly dependent on OR management at planting. Over-bark trunk volume 7 years after planting ranged from 96 m³ ha⁻¹ in the treatment with forest floor and harvest residue removal at planting to 164 m³ ha⁻¹ in the treatment with the largest amount of OR. A comparison of nutrient stocks within the ecosystem at planting and at the end of the rotation suggested that nutrient contents in OR were largely involved in the different response observed between treatments. OR management treatments did not significantly modify most of the nutrient concentrations in the upper layers of the mineral soil. Conventional soil analyses performed before planting and at ages 1 and 3 years were unable to detect differences between treatments despite large differences in tree growth. In contrast, linear regressions between stand aboveground biomass at harvesting and OR mass at planting (independent variable) showed that OR mass was an excellent predictor of stand yield (R² = 0.99). A large share of soil fertility comes from organic material above the mineral soil in highly weathered sandy soils and OR mass at planting might be used in conjunction with soil analyses to assess the potential of these soils to support forest plantations.     

Comparison of yield based drought tolerance indices in improved varieties, genetic stocks and landraces of potato (Solanum tuberosum L.)

Drought strongly influences potato (Solanum tuberosum) production and quality. Potato being a drought susceptible crop, the development of varieties with enhanced tolerance to water stress could highly improve productivity in drought prone areas. The objective of this study was to evaluate the ability of several yield based indices to be used in large scale screening for drought tolerance. The experiment included improved varieties, genetic stocks and landraces potatoes grown under drought and irrigated conditions. A group of accessions with high yield under both conditions was identified. Mean productivity (MP), geometric mean productivity (GMP), tolerance (TOL), drought tolerance index (DTI), drought susceptible index (DSI) and yield stability index (YSI) were calculated from tuber yield under drought and irrigated conditions. The relationships between these indices and yield were analyzed. The Fleiss’ Kappa concordance test was used to analyze the correspondence between accessions previously identified as highly productive under both drought and irrigated conditions and accessions with optimal values for the different indices. MP, GMP and DTI allowed identifying genotypes combining high yield potential and high yield under drought within the three subsets of genotypes. Conversely, DSI, YSI and TOL showed low and variable concordance values across subsets, suggesting that their efficiency in screening genotypes highly depends on the nature of the tested genetic material.