Molecular and morphological supertrees for eutherian (placental) mammals

A large body of diverse comparative data now exists for a major phylogenetic synthesis of the higher-level relationships among eutherian (placental) mammals. We present such a phylogenetic synthesis using the composite trees or supertrees from the combined and separate analyses of their published molecular and morphological source phylogenies. Our combined and separate supertrees largely support the same suprafamilial taxa and orders, but different interordinal clades. These similarities and differences reinforce the continuing contributions of morphological studies, while highlighting the growing influence of molecular information on the field. As current summaries of past research, our supertrees emphasize opportunities for future work, while providing a step toward the eventual integration of the data and characters themselves.     

A Novel High Capacity Biofilm Reactor System for Treatment of Domestic Sewage

A lab-scale novel biofilm reactor system, Ultra-Compact Biofilm Reactor (UCBR), was studied to investigate its performance and operational characteristics for domestic sewage treatment. The reactor was operated at four different hydraulic retention times, namely, 90, 60, 30 and 15 min. The operating ranges of volumetric loading rates in terms of COD, BOD₅, NH⁺ ₄-N and TKN were 5.6-62.1 kg COD/m³ d, 2.6-32.5 BOD₅/m³ d, 0.6-3.2 kg NH⁺ ₄-N/m³ d and 0.82-6.2 kg TKN/m³ d, respectively. The COD, BOD₅ and NH⁺ ₄-N removal efficiencies at 90-min hydraulic retention time (HRT) and 60-min HRT could exceed 80%, 90% and 99%, respectively. The corresponding maximum biomass concentrations were 12.0 g/L and 15.0 g/L at 90-min HRT and 60-min HRT, respectively. At 30-min HRT, the biomass concentration increased to a maximum of 24.0 g/L. However, COD and BOD₅ removal efficiencies decreased to 75% and 80%, respectively, while the NH⁺ ₄-N nitrification efficiency decreased to only 25% to 30%. These observations suggested that high biomass concentration alone was not sufficient to provide a high removal capacity in a UCBR. Further reduction in HRT to 15 min led to an excessive biomass decline from 22.5 g/L to 4.0 g/L. On the whole, the UCBR was able to sustain COD removal and NH⁺ ₄-N conversion of up to 5.96-18.70 kg COD/m³ d and 0.73-1.00 kg NH⁺ ₄-N/m³ d, respectively.     

Identification of fusarium head blight resistance related metabolites specific to doubled-haploid lines in barley

Fusarium head blight (FHB) and deoxynivalenol (DON) mycotoxin produced by Fusarium graminearum reduce barley yield and quality worldwide. Hundreds of quantitative trait loci (QTLs) have been identified in wheat and barley but their functions are largely unknown. Metabolic profiling was applied to better understand the mechanisms of resistance and to identify potential FHB resistance biomarker metabolites in barley. Four FHB resistant (H15-2, H148-3, H203-2 and H379-2) and one susceptible (H97-2), two-row, purple, doubled-haploid (DH) lines of barley were inoculated with either the pathogen or mock-solution. The disease severity quantified as the area under the disease progress curve (AUDPC) significantly varied between the resistant and susceptible genotypes, but not among the resistant genotypes. Neither the amount of DON nor the detoxified product, proportion of total DON, was significant among lines. The resistance related (RR, higher in abundance in resistant than in susceptible) metabolites varied in numbers and fold changes among the DH resistant lines. A total of 144 RR constitutive (RRC) and 167 RR induced (RRI) metabolites were selected, of which 39 and 37, respectively, were putatively identified. These RR metabolites mainly belonged to six chemical groups: phenylpropanoids, hydroxycinnamic acid amides, flavonoids, fatty acids, terpenoids, and alkaloids. The specific RR metabolites identified in each DH line, the possible mechanisms of resistance in each and their use as potential biomarkers are discussed.     

A simulation model for predicting the voluntary feed intake of a growing pig

Abstract

The main goal of this simulator is to predict voluntary feed intake based on the effects of temperature and stocking density. The model indicates the limiting factors relative to diet (protein, energy or ash), housing environmental conditions and stocking density. The concepts of compensatory protein growth, correction of lipid growth, the desired feed intake to meet energy, protein and ash requirements, and influences of stocking density, genotype and sex are also introduced in this model. This study draws a flow chart and steps to predict feed intake of a growing pig to make it clear how the model works. The model simulates the outcomes of feed intake, energy and protein requirements for maintenance, the energy cost for cold thermogenesis, and protein and lipid retention on a daily basis until slaughter weight. This model was also validated by comparison with published experiments.     

CLINICAL,DIAGNOSTIC, AND PATHOLOGICAL FEATURES OF 2 CASES OF METASTATIC IRIDOPHOROMA IN A VEILED CHAMELEON (CHAMAELEO CALYPTRATUS) AND A RED-BARRED DRAGON (CTENOPHORUS VADNAPPA)

Iridophores are iridescent cutaneous pigment cells found in reptiles, fish, and amphibians. Neoplasms of iridophores are rarely reported, and little is known about their behaviour, metastatic potential, and prognostic indicators. This paper reports details of the clinical course and pathological findings of metastatic iridophoroma in a veiled chameleon (Chamaeleo calyptratus) and red-barred dragon (Ctenophorus vadnappa). The veiled chameleon presented with a subcutaneous mass on the right lateral elbow and was diagnosed as an iridophoroma on fine needle aspiration. It was otherwise clinically normal. Within 35 days of excision, multiple secondary skin masses developed which were often non-pigmented and required microscopic examination to identify them as iridophoroma metastases. There were in total 54 days between the first detection of the primary mass and end stage, extensive cutaneous and visceral metastatic disease, and there had been no detectable primary mass during routine clinical examination 128 days prior to death. The red-barred dragon presented with a white sub-mandibular mass. While undergoing an excisional biopsy the animal expired, post-mortem examination revealed a cutaneous malignant iridophoroma with tumour cell clusters seen in pulmonary arterial vessels, suggesting that surgical handling of iridophoroma could precipitate the release of circulating tumour cell clusters. This is the first iridophoroma described in a red-barred dragon and the second report of a malignant iridophoroma in a veiled chameleon. Timely detection and careful excision of lizard iridophoroma may be an important factor in clinical outcome.     

Winter wheat pests and their natural enemies under organic farming system in Slovakia: Effect of ploughing and previous crop

Organic farming system of winter wheat was investigated in Solvakia over three years, 1995–1997. The system was carried out on a small scale (four plots of 50 m²). Neither pesticides nor inorganic fertilisers were applied. Effect of two treatments, ploughing and previous crop, on the community of pests and natural enemies was surveyed. There were two types of ploughing (shallow and deep) made in autumn before sowing. As previous crops, silage-maize and alfalfa were used each season. The effect of all factors was analysed by multivariate method, redundancy analysis (RDA) and Monte Carlo permutation to assess statistical significance. During three years, 37 taxons of pests and 27 taxons of natural enemies were recorded. The results of RDA showed that the community of insects (pests and natural enemies) was mainly influenced by temporal variation. The highest abundance of all insects was observed in 1996. The effect of the two treatments on the community of pests and natural enemies was less obvious. Pests were found to be significantly more influenced by ploughingthan by previous crop. Most of pests occurred more abundantly on plots with shallow ploughing and on plots after maize. Abundance of natural enemies were, however, significantly affected by previous crop. Majority of them were more abundant on plots after maize than after alfalfa. Ploughing had only marginally significant effect on natural enemies that were more abundant on shallow ploughed plots. Both ploughing and previous crop had only negligible effect on species diversity of natural enemies.     

Novel septoria speckled leaf blotch resistance loci in a barley doubled-haploid population

The genetics of resistance to Septoria speckled leaf blotch (SSLB), caused by Septoria passerinii, was studied in the Leger × CIho9831 barley doubled-haploid population. The 140 lines in the population segregated as 102 resistant and 38 susceptible, approximating a 3:1 ratio. A recombination map was developed using diversity arrays technology and other molecular markers. Quantitative trait locus (QTL) analysis demonstrated that resistance is primarily conferred either by having the CIho9831 allele at a QTL on 6HS or by having the CIho9831 allele at both of two QTLs on 3H and 2HL. In addition, ≈1/16 of the lines were resistant for unidentified reasons. This model predicts a resistant/susceptible ratio of 11:5, which fits the phenotypic observations. Minor QTLs were detected on 2HS and 1H. DNA sequences of linked markers suggest that the 6HS, 3H, and 2HS QTLs are part of resistance gene clusters and that the 6HS and 3H QTLs share homology. The 6HS QTL is identical to or closely linked to the SSLB resistance locus Rsp4 and the 1H QTL to the Rsp2 or Rsp3 locus. The 3H and 2HS QTLs are unique and offer new opportunities for pyramiding resistance genes through marker-assisted breeding for resistance to S. passerinii.     

Differential meiotic behaviour in hybrid clones of Aranda ‘Christine’ (Orchidaceae)

Summary The hybrid orchid clones of Aranda Christine show differential meiotic behaviour with respect to meiotic irregularities in the form of non-congressing chromosomes, laggards and complement fractionation. These irregularities occur in significantly variable but high frequencies, which results in the observed sterility of these hybrids. The observed differential meiotic behaviour is probably due to the transmission of a variable set of chromosomes from the third generation hybrid parent, Vanda Hilo Blue. Deviant spores, mainly polysporous and polyploid, are the end products of the meiotic aberrations. Such spores appear to be produced regularly in the intergeneric orchid hybrids.Meiosis in one of the Aranda Christine clones, C80, was found to be highly aberrant and could be unique among orchid hybrids.